BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479830
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23175.1 | Symbols: | HR-like lesion-inducing protein-relat... 1351 0.0
> AT3G23175.1 | Symbols: | HR-like lesion-inducing protein-related
| chr3:8274000-8275470 REVERSE LENGTH=942
Length=942
Score = 1351 bits (731), Expect = 0.0
Identities = 875/942 (93%), Gaps = 19/942 (2%)
Strand=Plus/Plus
Query 1 GCCGGGTCTGCGTGAATGATGATTGTCTTTGTTTATTACGACTGAAATGACTAACTCAAA 60
||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||
Sbjct 1 GCCGGGTCTGCGTGAATGATGATGGTCTTTGTTTATTACGACCGAAATGACTAAATCAAA 60
Query 61 CCTCTACTTCGTCAATGGATTGTTTCTTTTTTATCCATCTTAAAACATATTCTTTCTATT 120
| ||| |||| |||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 61 CTTCTTCTTCTTCAATGGA-TGTTTCTTTTTTATCCATCTCAAGACATATTCTTTCTATT 119
Query 121 TATTTACTTCTTCTTATG-AACACAGATTCATCGAAGCTTTAATCATATCACTTTCTTGA 179
|||||| ||||||||| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 120 TATTTA---CTTCTTATGCAAC-CAGATTCATCAAAGCTTTAATCATATCACTTTCTTGA 175
Query 180 TCGTTCGTTCATAGTTTGCTTTTGGAACAAAAAACATTGACATTAAGAGCACAATATGAA 239
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 176 TCGTTCGTTCATAGTTTGCTTCCGGAACAAAAAACATTGACATTAAGATCACAATATGAA 235
Query 240 GATGTCAATTAACAAGGTCAAGAGCATGATCTGCACAACCTTAACAAAGTCAATGCCAGC 299
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 236 GATGTCAATTAGCAAGGTCAAGAGCATGTTCTGCACAACCTTAACAAAGTCAATGCCAGC 295
Query 300 CATTGCCTTCTTTGGGAGAATGACATTTTCCTTTGTCTTTCTCATTACTGCTATCCAAGA 359
|||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 296 CATTGCCTTCTTTGGGAGAATGGCATTTTCCTTTGTCTTTTTCATTACTGCAATCCAAGA 355
Query 360 TTATGCTGATCATTATGGC----GA--TGGCGGGCCAATCGAGAAGACGATGGGACCAGC 413
||||||||||||||||||| || |||||||||| ||||||||||||||||||||||
Sbjct 356 TTATGCTGATCATTATGGCGGTGGAGCTGGCGGGCCACTCGAGAAGACGATGGGACCAGC 415
Query 414 CGTGAACGTGTTGTCCAAATATGGTTCAAAGGCACTAACATTTTACTTTGGAATGCAAGT 473
||||||| ||||| |||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 416 CGTGAACATGTTGAGCAAATATGGTTCTAAGGCTCTCACATTTTACTTTGGAATGCAAGT 475
Query 474 GGTCGCATTCGATGTTCGACTTATTGAGTTCGCACTCATAAGTGCAAAGGCAACCGGAGC 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 476 GGTCGCATTCGATGTTCGACTTATTGAGTTCGCACTCATAAGTGCAAAGGCAACCGCAGC 535
Query 534 TTTATGGTTCATCTTTGGACAATCCATCCCAGCTTACTTCTTGCTCGCAACGCAAATTTT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 536 TTTATGGTTCATCTTTGGACAATCCATCCCAGCTTACTTCTTGCTCGCAACGCAAATATT 595
Query 594 CTCAACTGTTATTCCTTTCCCTACCAACTTGAATGACTTCACTCAGAACTTGACGTTAAT 653
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CTCAACTGTCATTCCTTTCCCTACCAACTTGAATGACTTCACTCAGAACTTGACGTTAAT 655
Query 654 CGGGGCGTTGCTATATTACATTGGATTGAAGCATACTATCGACAACCTCGATGAGGAACA 713
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
Sbjct 656 CGGGGCGTTGCTATATTACATTGGATTGAAGCATACTGTCGACAACCTCGATGATGAAGA 715
Query 714 GAAGAACAAGGAGAATGAGGCAGAAGGATGATAAGGCCTTAACTTCCAAAGCCAATGCCA 773
|||||||||| ||| | ||||||||||||||||| ||||||||||||||| | |
Sbjct 716 GAAGAACAAGCAGAC-----C-GAAGGATGATAAGGCCTCAACTTCCAAAGCCAAAGTAA 769
Query 774 AAGCAAACTGCAAGTGACAATTTCACAAACCCCATTGCTTTATTTGGATAGTTCCCATTA 833
|||||||||| ||||||||| ||||||||| | |||||||||||| ||| ||||||||||
Sbjct 770 AAGCAAACTGAAAGTGACAACTTCACAAACTCTATTGCTTTATTTCGATGGTTCCCATTA 829
Query 834 TGTCTTTTCCTTTTATTTGTCTTTAATCAGACAACTATTTGAGCTTATGGTTTAGTAAGT 893
|||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 830 TGTCTTTTCCTTTTATTTTTCTTTTATCAGACGACTATTTGACCTTATGGTTTAGTAAGT 889
Query 894 AATATCACACTCCATC-AATGTGTTTGTTTGCTGTTATGCTT 934
|||||||| |||||| |||||||||||||||||||||||||
Sbjct 890 GATATCACATTCCATCCAATGTGTTTGTTTGCTGTTATGCTT 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5