BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479832
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23190.1 | Symbols: | HR-like lesion-inducing protein-relat... 1445 0.0
> AT3G23190.1 | Symbols: | HR-like lesion-inducing protein-related
| chr3:8279289-8280912 FORWARD LENGTH=1056
Length=1056
Score = 1445 bits (782), Expect = 0.0
Identities = 973/1062 (92%), Gaps = 26/1062 (2%)
Strand=Plus/Plus
Query 1 TTCAATTATTCCATCATCTACCATCTAGTCGTCTCCTTGGTGATCTAAGGACTTTATCAT 60
||||||||||||||||| |||||| |||||||||||||||||||| || |||| ||||
Sbjct 5 TTCAATTATTCCATCATTTACCATTTAGTCGTCTCCTTGGTGATCCAAATACTTCATCAC 64
Query 61 CTTCCTTCGTAGCAAATTCTCTTCGTCTGTCTCATACATTTAAACACACATAGATATACA 120
|||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| |||||
Sbjct 65 CTTCCTTCATAGCAAATTCTCTTCGTCTATCTCATACATTTAAACAAACATAGACATACA 124
Query 121 CTTAAT-AATCTTCCTTAATTTTAAGaaaaaaaaCATGGAGAAAACCCAAGAATCGGTGG 179
| |||| |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 125 C-TAATCAATCTTCCTTAA-TTTAA-AAAAAAAACATGGAGAAAACCCAAGAATCAGTGG 181
Query 180 TTAGATATGGAAGAAAGATAGAGAAAATGCCGTTTCTTATGCCTGCCGGTCGAGTTGTCT 239
|||||||||||| |||||| ||||||||||| | ||||||||| ||||| ||||||||||
Sbjct 182 TTAGATATGGAAAAAAGATCGAGAAAATGCCATATCTTATGCCCGCCGGCCGAGTTGTCT 241
Query 240 TTGCAACTGCGTTCATCGTGTCTGCTTGGAGAGAGTATTATGGTTTCGGAGTAGCTGCCG 299
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 242 TTGCATCTGCGTTCCTCGTGTCTGCTTGGAGAGAGTATTATGGTTTCGGATTAGCTGCCG 301
Query 300 ATGAGTTAAGACCAAAACTTGGTTTCTTTGAGAACCAGGCAAA-GTACATAGTTTCTCTT 358
||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||
Sbjct 302 ATGAGTTAAGACCAAAACTTGGTTTCTTTGAGAACCAGGCAAAAGC-CATAGTTGCTCTT 360
Query 359 GGTATAATGATGAAGTTTATTGGAGGGATCTTATTCATCTTCAACACCTACCTAGGAGCT 418
|||||| ||||||||||| ||||||||||||||||||||||||| || ||| ||||||||
Sbjct 361 GGTATATTGATGAAGTTTGTTGGAGGGATCTTATTCATCTTCAATACGTACGTAGGAGCT 420
Query 419 TCGCCTTTT-CTTGTATACCAAGCCATTTTGAGTCCGATATTGTACGATTTCTACAATCG 477
||| |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 421 GCGC-TTTTGCTTGTATACCAAGCCATCTTGAGCCCGATATTGTACGATTTCTACAATCG 479
Query 478 CGATTTTGATAGAGACCATTTCACCATTTTCTACACAAAGTTCAAAGAGTTTGTG-AACG 536
||||| |||||||||||||||||| |||||||||||||||||||||| |||||| || |
Sbjct 480 CGATTACGATAGAGACCATTTCACCGTTTTCTACACAAAGTTCAAAGAATTTGTGGAA-G 538
Query 537 AGACGGTGTCAGCAGATGATGGAGTGGCCATGAGCCTCTATACCTCTATGGTTAACGAAG 596
||||| |||||| |||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 539 AGACGACGTCAGCTGATGGTGGAGTGGCCATGAGCCTCTATACCTCTGTGGTTAACGAAG 598
Query 597 AATCGCGCCAGAAATTC-TGCGATCAGCTTAACGAGATTGCAAGACTAGCCATCTCGAAT 655
||||||||||||||||| | ||||||||||||||||||||| ||| | ||||||||||||
Sbjct 599 AATCGCGCCAGAAATTCAT-CGATCAGCTTAACGAGATTGCGAGAATCGCCATCTCGAAT 657
Query 656 CCTCTATTCACACCAAGCGAGTTT-AACACATTGTTCATTAGGTTTATTAAGGGTGTTGG 714
|||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||
Sbjct 658 CCTCTATTCACACCAAGCGA-TTTCAACACATTGTTCATAAGGTTTATTAAGGGTGTTGG 716
Query 715 AATAGTAGCTGCATTGGCGTGTTTCATGGCGATGAAACATAGGCATGGGGTGCTCATCAA 774
||||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
Sbjct 717 AATAGCAGCTGCATTGGCGTGCTTCATTGCGATGAAACATAGGCATGCGGTGCTCATCGA 776
Query 775 GAAGACGTCCAAGAAGCAAAAAACTAACTGATCC-AGTTTGGCTTATTTACTTGTG--TC 831
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||
Sbjct 777 GAAGACGTCCAAGAAGCAAAAAACTAACTGATCCGA-TTTGGCTTATTTACTTGTGGATC 835
Query 832 TCAATCAACAAGTGAtttctttgtttttcaataatttttagtttcttttgaagatttgtg 891
|||||||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||||
Sbjct 836 TCAATCAACAAGTGATCTCTATGTTTTTCAATAATTATTAGTTTCTTTT-AAGATTTGTG 894
Query 892 agttttttcttttgGCTATGAATAAATAGCAAGTATTTGATTATGATGTTGTA-T-T--T 947
|||||| ||||| |||||||||||||||||||||||| |||||||||||||| | | |
Sbjct 895 AGTTTTG-CTTTTTGCTATGAATAAATAGCAAGTATTTAATTATGATGTTGTACTGTAAT 953
Query 948 T-CATTTCCCGAACAAATTCAAATTTCCTTCGGATCATTTGATTTAGttttttctgtttt 1006
| ||| ||| ||||||||| |||||||||||||||||||||||| || ||||| ||||||
Sbjct 954 TTCATATCC-GAACAAATTTAAATTTCCTTCGGATCATTTGATTAAGCTTTTTATGTTTT 1012
Query 1007 ttttttCTTTCTATATGGTAAGCTTTTTAAAAAACTAATTAA 1048
||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1013 ATTTTTCTTTATATATGGTAAGCTTTTTTAAAAACTAATTAA 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389532381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5