BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479836

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23220.1 | Symbols:  | Integrase-type DNA-binding superfamil...   549    7e-156


> AT3G23220.1 | Symbols:  | Integrase-type DNA-binding superfamily 
protein | chr3:8287950-8288388 FORWARD LENGTH=439
Length=439

 Score =  549 bits (297),  Expect = 7e-156
 Identities = 359/388 (93%), Gaps = 7/388 (2%)
 Strand=Plus/Plus

Query  2    TGAAATACAGAGGCGTACGAAAGCGTCCATGGGGGAAATATGCGGCGGAGATACGCGACT  61
            |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct  54   TGAAATACAGAGGCGTACGAAAGCGTCCATGGGGAAAATATGCGGCGGAGATTCGCGACT  113

Query  62   CAGCTAGACACGGTGCTCGTGTTTGGCTTGGGACGTTTGACACAGCGGAAGACGCGGCTC  121
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  114  CAGCTAGACACGGTGCTCGTGTTTGGCTTGGGACGTTTAACACAGCGGAAGACGCGGCTC  173

Query  122  GGGCTTATGATAGAGCAGCTTTTGCCATGAGAGGCCAAAGGGCCATTCTCAATTTCCCTC  181
            |||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||
Sbjct  174  GGGCTTATGATAGAGCAGCTTTCGGCATGAGAGGCCAAAGGGCCATTCTCAATTTTCCTC  233

Query  182  ACGAGTATCAAATGATGAAGGACGGTCCAAATGGCAGCCGA-GAGAATGTGGTGGCTTCC  240
            ||||||||||||||||||||||||||||||||||||||| | |||||||  |||||||||
Sbjct  234  ACGAGTATCAAATGATGAAGGACGGTCCAAATGGCAGCC-ACGAGAATGCAGTGGCTTCC  292

Query  241  TCGTCGTCTGAATATAGAGGAGGAGGTGGTGGTGACC--GGAAGG-AAGTGATTGAGTTT  297
            |||||||| | ||||||||||||||||||||||||    || ||| |||| |||||||| 
Sbjct  293  TCGTCGTCGGGATATAGAGGAGGAGGTGGTGGTGATGATGGGAGGGAAGTTATTGAGTTC  352

Query  298  GAGTATTTAGACGATAGTTTATTGGAGGAGCTTTTAGATTATGGAGAGA-ACTATAACCA  356
            |||||||| || |||||||||||||||||||||||||||||||| |||| | | ||||||
Sbjct  353  GAGTATTTGGATGATAGTTTATTGGAGGAGCTTTTAGATTATGGTGAGAGA-TCTAACCA  411

Query  357  AGACACTTGGAACGACGCAAACCGTTAG  384
            ||||| ||| |||||||||||||| |||
Sbjct  412  AGACAATTGTAACGACGCAAACCGCTAG  439



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18096389640


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5