BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479837

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23230.1 | Symbols:  | Integrase-type DNA-binding superfamil...   630    3e-180


> AT3G23230.1 | Symbols:  | Integrase-type DNA-binding superfamily 
protein | chr3:8289647-8290066 REVERSE LENGTH=420
Length=420

 Score =  630 bits (341),  Expect = 3e-180
 Identities = 396/422 (94%), Gaps = 5/422 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGAGCTCAAACAGGAGGAGCAACAACCAATCACAAGATGACAAGCAAGCTCGTTTC  60
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAGAGCTCAAACAGGAGCAGCAACAACCAATCACAAGATGACAAGCAAGCTCGTTTC  60

Query  61   CGAGGCGTTCGAAGGAGACCATGGGGCAAA-TTTGCAGCAGAGATTCGAGACCCGTCGAG  119
            || || |||||||| || || ||||| ||| |||||||||||||||||||||||||||||
Sbjct  61   CGGGGAGTTCGAAGAAGGCCTTGGGG-AAAGTTTGCAGCAGAGATTCGAGACCCGTCGAG  119

Query  120  GAACGGTGCCCGTCTTTGGCTAGGGACATTTGAGACCGCTGAGGAGGCGGCACGGGCTTA  179
             |||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||
Sbjct  120  AAACGGTGCCCGTCTTTGGCTCGGGACATTTGAGACCGCTGAGGAGGCAGCAAGGGCTTA  179

Query  180  TGACCGAGCAGCCTATAACCTTAGGGGCCATCTCGCTATACTCAACTTCCCTAATGAGTA  239
            |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  180  TGACCGAGCAGCCTTTAACCTTAGGGGTCATCTCGCTATACTCAACTTCCCTAATGAGTA  239

Query  240  TTATTCACGTATGGACGACTACTCGCTTCGCCCTCCTTACGcttcttcttcttcttcttc  299
            |||| ||||||||||||||||||||||||||||||||||   | ||||||||||||| ||
Sbjct  240  TTATCCACGTATGGACGACTACTCGCTTCGCCCTCCTTA---TGCTTCTTCTTCTTCGTC  296

Query  300  ttcGTCATCGGGTTCTACTTCTACCAATGCGAGTCGACAAAACCAAAGAGAAGTTTTCGA  359
             |||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||
Sbjct  297  GTCGTCATCGGGTTCAACTTCTACTAATGTGAGTCGACAAAACCAAAGAGAAGTTTTCGA  356

Query  360  GTTTGAGTATTTGGACGATAGGGTTCTCGAAGAACTTCTTGATTCAGAAGAAAGGAAGAG  419
            |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct  357  GTTTGAGTATTTGGACGATAAGGTTCTTGAAGAACTTCTTGATTCAGAAGAAAGGAAGAG  416

Query  420  AT  421
            ||
Sbjct  417  AT  418



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19956296353


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5