BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479838
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23250.1 | Symbols: MYB15, ATY19, ATMYB15 | myb domain prote... 1459 0.0
> AT3G23250.1 | Symbols: MYB15, ATY19, ATMYB15 | myb domain protein
15 | chr3:8309209-8310826 FORWARD LENGTH=1343
Length=1343
Score = 1459 bits (790), Expect = 0.0
Identities = 971/1053 (92%), Gaps = 34/1053 (3%)
Strand=Plus/Plus
Query 245 AAATCAAAGAGATGGGAAGAGCTCCATGCTGTGAGAAGATGGGGTTGAAGAGAGGACCAT 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 AAATCAAAGAGATGGGAAGAGCTCCATGCTGTGAGAAGATGGGGTTGAAGAGAGGACCAT 332
Query 305 GGACGCCTGAAGAAGATCAAATCTTGGTCTCTTTTATCCTCAAGCATGGCCATAGTAACT 364
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 333 GGACACCTGAAGAAGATCAAATCTTGGTCTCTTTTATCCTCAACCATGGACATAGTAACT 392
Query 365 GGCGAGCTCTCCCTAAGCAAGCTGGTCTTTTGAGATGTGGAAAAAGCTGTAGACTTAGGT 424
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 GGCGAGCCCTCCCTAAGCAAGCTGGTCTTTTGAGATGTGGAAAAAGCTGTAGACTTAGGT 452
Query 425 GGATGAACTATTTAAAGCCTGATATAAAACGTGGCAATTTCACCAAAGAAGAAGAGGATG 484
||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 453 GGATGAACTATTTAAAGCCTGATATTAAACGTGGCAATTTCACCAAAGAAGAGGAAGATG 512
Query 485 CTATCATCAGCTTACACCAAATCCTTGGCAATAGATGGTCAGCGATTGCAGCGAAATTGC 544
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct 513 CTATCATCAGCTTACACCAAATACTTGGCAATAGATGGTCAGCGATTGCAGCAAAACTGC 572
Query 545 CTGGAAGAACTGATAACGAGATCAAGAACGTATGGCACACTCACTTGAAGAAGAGACTCA 604
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 CTGGAAGAACCGATAACGAGATCAAGAACGTATGGCACACTCACTTGAAGAAGAGACTCG 632
Query 605 AAGATTATCAACCCGCTAAACCTAAGACCAGCAACAAAAAGAAGGGTACTAAACCAAAAT 664
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 AAGATTATCAACCAGCTAAACCTAAGACCAGCAACAAAAAGAAGGGTACTAAACCAAAAT 692
Query 665 CTGAATCCGTAATAACGAGCTCGAACAGTACTAGAAGCGAATCGGAGCTAGCTA-ATTCA 723
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 693 CTGAATCCGTAATAACGAGCTCGAACAGTACTAGAAGCGAATCGGAGCTAGC-AGATTCA 751
Query 724 TCAAACCCTTCTGGAGAAAGCTTGTTTTCGGCATCACCTTCGACGAGTGAGGTTTCTTCG 783
||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||||||
Sbjct 752 TCAAACCCTTCTGGAGAAAGCTTATTTTCGACATCGCCTTCGACAAGTGAGGTTTCTTCG 811
Query 784 ATGACACTCATAAGCCACGAAGGAC-ATAGCAACGAGATTAATATGGATAACAAACCGGG 842
|||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 812 ATGACACTCATAAGCCACGACGG-CTATAGCAACGAGATTAATATGGATAACAAACCGGG 870
Query 843 AGACATCGGTACTATATATCAAGATTGTGTTTCTTTAGAAACTTTTGGTGCGGACATCGA 902
||| ||| ||||||| ||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 871 AGATATCAGTACTATCGATCAAGAATGTGTTTCTTTCGAAACTTTTGGTGCGGATATCGA 930
Query 903 TGACAGCTTTTGGAACGAGACACTCTATAGCCAA-AGTGAACACAACTATGCCTCGAATG 961
||| ||||| ||||| |||||||| ||||||||| | |||||||||||| | |||||||
Sbjct 931 TGAAAGCTTCTGGAAAGAGACACTGTATAGCCAAGA-TGAACACAACTACGTATCGAATG 989
Query 962 ACCTAGAAGTGGCTGGTTTAGATGAGATACAACAAGAGTTTCAACACTTAGGCTCCGTTA 1021
||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| ||
Sbjct 990 ACCTAGAAGTGGCTGGTTTAGTTGAGATACAACAAGAGTTTCAAAACTTGGGCTCCGCTA 1049
Query 1022 ATAATGAGATGATTTTCGATAGTGAGATGGACTTCTGGTTCGATGTATTGGCGAGAGCAG 1081
|||||||||||||||| || |||||||||||||||||||||||||||||||| ||| | |
Sbjct 1050 ATAATGAGATGATTTTTGACAGTGAGATGGACTTCTGGTTCGATGTATTGGCTAGAACCG 1109
Query 1082 GCGGGGAACAAGATCTCTTAGCCGGGCTCTAATTAAAATGTTTGAGGAGTAAAGTGAAAT 1141
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1110 GCGGGGAACAAGATCTCTTAGCCGGGCTCTAGTTAACATGTTTGAGGAGTAAAGTGAAAT 1169
Query 1142 GGTGCAAATTA-TT-----T------T------G-TTT-----ACC-a-aaaaaaa-aCA 1174
||||||||||| || | | | ||| ||| | ||||||| |||
Sbjct 1170 GGTGCAAATTAGTTAAGGCTAAGAAATTCAAAAGCTTTTGTTTACCGAGAAAAAAACACA 1229
Query 1175 CTCTAACTGTTGATGTGATGTTAGTTAGTATATTATTTAGAGGCTGCGTTTTCAAAAAAT 1234
|||||||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct 1230 CTCTAACTCTTGATGTGATGT-AGTTAGTGTATTAATTAGAGGCTGCGTTTTCAAAAAAT 1288
Query 1235 TGTATTCATTTGTTTCTCCAAGATTGAGTAGTT 1267
|| |||||||||||||||||| |||||||||||
Sbjct 1289 TGAATTCATTTGTTTCTCCAAAATTGAGTAGTT 1321
Score = 327 bits (177), Expect = 1e-88
Identities = 227/249 (91%), Gaps = 12/249 (5%)
Strand=Plus/Plus
Query 1 AAAACATACTTTTGACTATGTTGCCTATAACCAAAAAGACAtctctctatctctttctct 60
||||||||||||||||||||||||| |||| |||||||||| |||| |||| |||||
Sbjct 5 AAAACATACTTTTGACTATGTTGCCAATAATCAAAAAGACA--TCTC--TCTC--TCTCT 58
Query 61 ctctctcATCCTA-TTTCCAAGAAGCTCA-CAATGCTTTTGAATTCTCTCACATGTCTTT 118
||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 59 CTCTCACATCCTATTTTCCAAGAAGCTCACCAATGCTTTTGAATTCTCCCACATGTCTTT 118
Query 119 TGACAATTTTAGTATAAATACTTAA-CCCATCAGTCAGTCATTCTCATATGTTCATCAAC 177
|||||||||||||||||||||| || ||| | |||||||||||||||| ||||||||||
Sbjct 119 TGACAATTTTAGTATAAATACTCAAACCCCTTAGTCAGTCATTCTCAT--GTTCATCAAC 176
Query 178 AACATTTGATCTCAAGCTCATAAGAATTTGATCTCCACATTATATCTTGATCGTCACCAC 237
| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 177 AGCATTTGATCTCAAGCTCATAGGAATTTGATCTCCACATTATATCTTGATCATCACCAC 236
Query 238 AAGACAAAA 246
|||| ||||
Sbjct 237 AAGA-AAAA 244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62298876345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5