BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479847
Length=430
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23325.1 | Symbols: | Splicing factor 3B subunit 5/RDS3 com... 460 4e-129
AT4G14342.1 | Symbols: | Splicing factor 3B subunit 5/RDS3 com... 368 2e-101
> AT3G23325.1 | Symbols: | Splicing factor 3B subunit 5/RDS3 complex
subunit 10 | chr3:8345771-8347062 FORWARD LENGTH=507
Length=507
Score = 460 bits (249), Expect = 4e-129
Identities = 269/279 (96%), Gaps = 0/279 (0%)
Strand=Plus/Plus
Query 17 TCTGAAAGATGCAGGCAAGTGATAGGTTTAACATAAATTCTCAGCTTGAGCATCTTCAAG 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 30 TCTGAAAGATGCAGGCAAGTGATAGGTTTAACATAAATTCTCAGCTTGAGCATCTTCAAG 89
Query 77 CTAAGTATGTTGGTACTGGTCATGCAGATTTAAGCAGATTTGAATGGGCTGTGAACATTC 136
|||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 90 CTAAGTATGTTGGTACAGGTCATGCAGATTTGAGCAGATTTGAATGGACTGTGAACATTC 149
Query 137 AGCGTGATAGCTATGCTTCATACATTGGTCACTACCCGATGCTTTCTTACTTTGCAATCG 196
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 150 AGCGTGATAGTTATGCTTCATACATTGGTCACTACCCGATGCTTTCTTACTTTGCAATAG 209
Query 197 CTGAGAACGAATCCATTGGCCGTGAACGCTACAACTTCATGCAGAAAATGCTTTTACCTT 256
||||||||||||| ||||| || ||||| ||||||||||||||||||||||| |||||||
Sbjct 210 CTGAGAACGAATCTATTGGTCGAGAACGTTACAACTTCATGCAGAAAATGCTCTTACCTT 269
Query 257 GCGGCCTTCCTCCAGAAAGAGAAGACGAGTAAGAGCTTG 295
|||||||||||||||||||||||||||||||||||||||
Sbjct 270 GCGGCCTTCCTCCAGAAAGAGAAGACGAGTAAGAGCTTG 308
> AT4G14342.1 | Symbols: | Splicing factor 3B subunit 5/RDS3 complex
subunit 10 | chr4:8253550-8255508 REVERSE LENGTH=606
Length=606
Score = 368 bits (199), Expect = 2e-101
Identities = 250/275 (91%), Gaps = 1/275 (0%)
Strand=Plus/Plus
Query 8 TGCG-AACTCTCTGAAAGATGCAGGCAAGTGATAGGTTTAACATAAATTCTCAGCTTGAG 66
|||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 86 TGCGAAACTCTGAAAAAGATGCAGGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAG 145
Query 67 CATCTTCAAGCTAAGTATGTTGGTACTGGTCATGCAGATTTAAGCAGATTTGAATGGGCT 126
|||||||||||||| |||||||| || |||||||| ||||| || |||||||| ||||||
Sbjct 146 CATCTTCAAGCTAAATATGTTGGAACCGGTCATGCTGATTTGAGTAGATTTGAGTGGGCT 205
Query 127 GTGAACATTCAGCGTGATAGCTATGCTTCATACATTGGTCACTACCCGATGCTTTCTTAC 186
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 206 GTGAACATTCAGCGTGATAGTTATGCTTCATACATTGGTCACTACCCTATGCTTTCATAC 265
Query 187 TTTGCAATCGCTGAGAACGAATCCATTGGCCGTGAACGCTACAACTTCATGCAGAAAATG 246
||||| || ||||||||||| || ||||| || ||||||||||| |||||||||||||||
Sbjct 266 TTTGCTATTGCTGAGAACGAGTCTATTGGACGAGAACGCTACAATTTCATGCAGAAAATG 325
Query 247 CTTTTACCTTGCGGCCTTCCTCCAGAAAGAGAAGA 281
|| ||||| |||||||||||||| |||||||||||
Sbjct 326 CTATTACCCTGCGGCCTTCCTCCGGAAAGAGAAGA 360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20408706094
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5