BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479848 Length=2040 Score E Sequences producing significant alignments: (Bits) Value AT3G23330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2447 0.0 > AT3G23330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:8347200-8349347 FORWARD LENGTH=2148 Length=2148 Score = 2447 bits (1325), Expect = 0.0 Identities = 1502/1588 (95%), Gaps = 9/1588 (1%) Strand=Plus/Plus Query 457 CTTCTTGGAATAGATAGTGTGAGGAAAGTTTTTGAATTGATGCCTAGAAAGGATGTTGTG 516 ||| |||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 566 CTT-TTGGAATAGACAGTGTGAGGAGGGTTTTTGAAGTGATGCCTAGAAAGGATGTTGTG 624 Query 517 TCGTATAATACTGTCATTGCAGGGTATGCACAAAGTGGAATGTATGAAGATGCTTTGAGA 576 |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 625 TCGTATAATACTATCATTGCAGGGTATGCACAGAGTGGAATGTATGAAGATGCTTTGAGA 684 Query 577 ATGGTTAGGGAGATGGGAACTAGTGATTTAAAGCCTGATGCTTTCACTTTGTCTAGTGTG 636 |||||||||||||||||||||| ||| |||||||||||| |||| ||||||||||||||| Sbjct 685 ATGGTTAGGGAGATGGGAACTACTGACTTAAAGCCTGATTCTTTTACTTTGTCTAGTGTG 744 Query 637 CTTCCGATATTTTCTGAGTATGTGAATGTTCTTAAGGGAAAAGAGATTCATGGGTATGTG 696 |||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| Sbjct 745 CTTCCGATATTTTCTGAGTATGTGGATGTTATTAAGGGGAAAGAGATTCATGGGTATGTG 804 Query 697 ATTAGGAAAGGGATTGATAGTGATGTATATATTGGGAGTAGTTTGGTTGATATGTATGCT 756 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 805 ATTAGGAAAGGGATTGATAGTGATGTATATATTGGGAGTAGTTTGGTTGATATGTATGCG 864 Query 757 AAAAGTGCTCGGATTGAAGACTCGGAAAGAGTGTTTTCTCACTTGTATCGTCGGGATAGT 816 ||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| || Sbjct 865 AAAAGTGCTCGGATTGAAGACTCTGAAAGAGTGTTTTCTCGCTTGTATTGTCGGGATGGT 924 Query 817 ATCTCGTGGAACTCGCTTGTAGCTGGGTATGTACAGAACGGTAGATACAATGAGGCTCTG 876 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 925 ATCTCGTGGAACTCGCTTGTAGCTGGGTATGTACAGAATGGTAGATACAATGAGGCTCTG 984 Query 877 AGATTATTTAGGCAAATGGTGAGCGCAAAGGTTAGGCCAGGAGCTGTGGCGTTCTCAAGT 936 ||||| || ||||||||||||| ||||||||||| |||||| |||||||||||||||||| Sbjct 985 AGATTGTTCAGGCAAATGGTGACCGCAAAGGTTAAGCCAGGGGCTGTGGCGTTCTCAAGT 1044 Query 937 GTGATTCCTGCTTGTGCTCACCTAGCTACCTTGCACCTTGGGAAACAACTTCACGGATAT 996 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1045 GTGATTCCTGCTTGTGCTCACCTAGCCACCTTGCACCTTGGGAAACAACTTCACGGATAT 1104 Query 997 GTATTAAGAGGTGGCTTTGGGAGAAATATATTCATAGCTAGTGCACTTGTCGATATGTAC 1056 |||||||| ||||||||||| || || ||||||||||||||||||||||| ||||||||| Sbjct 1105 GTATTAAGGGGTGGCTTTGGCAGTAACATATTCATAGCTAGTGCACTTGTTGATATGTAC 1164 Query 1057 TC-AAAGTGTGGAAATATTCAGGCTGCTAGGAAGATTTTTGACAGGATGAATCTACACGA 1115 || ||| ||||| |||||| |||||||||||||||||||||||||||||||| ||| ||| Sbjct 1165 TCGAAA-TGTGGGAATATTAAGGCTGCTAGGAAGATTTTTGACAGGATGAATGTACTCGA 1223 Query 1116 CGAAGTATCATGGACGGCTATTATAATGGGTCATGCGTTACATGGTCATGGGCATGAAGC 1175 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1224 TGAAGTATCATGGACGGCTATTATAATGGGGCATGCGTTACATGGTCATGGGCATGAAGC 1283 Query 1176 AGTTTCGTTGTTTGAGGAGATGAAACGGCAAGGAGTGAAACCAAATCAAGTGGCCTTTGT 1235 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| Sbjct 1284 AGTTTCGTTGTTTGAGGAGATGAAACGACAAGGAGTGAAACCGAATCAAGTGGCATTTGT 1343 Query 1236 TGCTGTACTAACGGCTTGTAGTCATGTGGGGTTGGTAGATAAGGCGTGGGGATATTTCAA 1295 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 1344 TGCTGTACTAACGGCTTGTAGTCATGTGGGGTTGGTAGATGAGGCATGGGGATATTTCAA 1403 Query 1296 CAGCATGACTAATGTTTACGGTTTAAACCAGGAGTTAGAACATTATGCAGCTGTAGCAGA 1355 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1404 CAGCATGACTAAGGTTTACGGTTTAAACCAGGAGTTAGAACATTATGCAGCTGTAGCGGA 1463 Query 1356 TCTTCTAGGCCGTGCAGGGAAACTGGAAGAAGCATACGATTTCATTTCAAACATGCGTGT 1415 ||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| |||| Sbjct 1464 TCTTCTAGGCCGTGCAGGGAAGCTGGAAGAAGCATACAATTTCATTTCAAAGATGTGTGT 1523 Query 1416 TGAAC-AGACGGGTAGTGTCTGGTCTACCTTATTGTCTTCTTGCAGCGTTCACAAGAATC 1474 ||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1524 TGAACCA-ACTGGTAGTGTCTGGTCTACCTTATTGTCTTCTTGCAGCGTTCACAAGAATC 1582 Query 1475 TTGAGCTAGCCGAGAAGGTAGCAGAGAAGATATTCACAATTGATTCTGAAAACATGGGAG 1534 ||||| | || ||||||||||| |||||||||||||| | ||||||||||||||||||| Sbjct 1583 TTGAGTTGGCTGAGAAGGTAGCGGAGAAGATATTCACTGTCGATTCTGAAAACATGGGAG 1642 Query 1535 CTTATGTTTTGATGTGCAATATGTATGCGTCTAATGGGAGATGGAAAGAAATGGCGAAAC 1594 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1643 CTTATGTTTTGATGTGCAATATGTATGCGTCTAATGGAAGATGGAAAGAAATGGCGAAAC 1702 Query 1595 TGAGATTAAG-AGTGAGGAAAAAAGGATTACGTAAAAAGCCAGCTTGTAGTTGGATCGAA 1653 | ||||| | | ||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct 1703 TAAGATTGCGTA-TGAGGAAGAAAGGATTGCGGAAAAAGCCAGCTTGTAGTTGGATCGAA 1761 Query 1654 ATGAAAAACAAGACTCATGGGTTTGTTTCAGGAGATAGATCGCATCCGAGTATGGACA-G 1712 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 1762 ATGAAAAACAAGACTCATGGATTTGTTTCAGGAGATAGATCGCATCCGAGTATGGACAAG 1821 Query 1713 AATCAACGAGTTTCTTAGAGCTGTAATGGAACAGATGGAGAAAGAAGGTTATGTTGCAGA 1772 | ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 1822 A-TCAACGAGTTTCTTAAAGCTGTAATGGAACAGATGGAGAAAGAAGGGTATGTTGCAGA 1880 Query 1773 CACAAGCGGCGTGCTTCACGATGTAGACGAAGAGCATAAGAGAGAGCTTTTGTTTGGACA 1832 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1881 CACAAGCGGCGTGCTTCACGATGTAGACGAAGAGCATAAGAGAGAGCTTTTGTTCGGACA 1940 Query 1833 CAGCGAGAGATTGGCTGTTGCATTTGGTATCATCAACACAGAACCTGGCACGACGATTAG 1892 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1941 CAGTGAGAGATTGGCTGTTGCCTTTGGTATCATCAACACAGAACCTGGCACGACAATTAG 2000 Query 1893 AGTCACTAAGAACATAAGGATTTGCACGGATTGTCATGTCGCGATCAAGTTTATCTCGAA 1952 |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 2001 AGTCACTAAGAATATAAGGATATGCACGGATTGTCATGTCGCAATCAAGTTTATCTCGAA 2060 Query 1953 GATCACGGAGAGAGAGATTATTGTTAGGGATAATAGCAGATTCCACCATTTTAACCGTGG 2012 ||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 2061 GATCACGGAAAGAGAGATTATCGTTAGGGATAATAGCAGATTCCACCATTTCAACCGTGG 2120 Query 2013 AAGCTGTTCTTGTGGAGACTATTGGTAA 2040 || ||||||||||||||| ||||||||| Sbjct 2121 AAACTGTTCTTGTGGAGATTATTGGTAA 2148 Score = 752 bits (407), Expect = 0.0 Identities = 446/465 (96%), Gaps = 2/465 (0%) Strand=Plus/Plus Query 1 ATGAGTTCATCAAAAGCCCTAATCAAAACCCTGATTAAGAACCCTACTCGCATCAAATCC 60 ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| Sbjct 1 ATGAGTTCATCAAAAGCCCTAATCAAAACCCTGATTAAGAATCCAACTCGAATCAAATCC 60 Query 61 AAATCTCAAGCTAAGCAGCTTCACGCGCAATTCATCAGAACTCAATCACTCTCTCACACA 120 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 61 AAATCTCAAGCGAAGCAGCTTCACGCACAATTCATCAGAACTCAATCACTCTCTCATACA 120 Query 121 TCTGCTTCAATCGTAATCTCAATCTACACAAACCTTAAACTTTTGCACGAAGCTTTGCTT 180 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCAGCTTCAATCGTAATCTCAATCTACACAAACCTTAAACTTTTGCACGAAGCTTTGCTT 180 Query 181 GTTTTCAAAACCCTCGAGTCTCCTCCTGTTCTCGCATGGAAGTCAGTAATCAGATGCTTC 240 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 181 CTTTTCAAAACCCTTAAGTCTCCTCCTGTTCTAGCATGGAAGTCAGTAATCAGATGCTTC 240 Query 241 ACCGACCAGTCTTTATTCTCC-CGTGCTTTGGCTTCGTTCGTGGAAATGCGAGCTTCTGG 299 |||||||||||| |||||||| | || || |||||||| |||||||||||||||||||| Sbjct 241 ACCGACCAGTCTCTATTCTCCAAG-GCGTTAGCTTCGTTTGTGGAAATGCGAGCTTCTGG 299 Query 300 GAGATGCCCAGATCACAATGTGTTTCCTTCTGTGTTGAAATCGTGTACGATGATGATGGA 359 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 300 GAGATGCCCAGATCACAATGTGTTTCCTTCTGTTTTGAAATCGTGTACGATGATGATGGA 359 Query 360 TTTGAGATTTGGTGAGTCTGTTCATGGGTTTATTGTTAGGCTTGGTATGGATTGTGATTT 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TTTGAGATTTGGTGAGTCTGTTCATGGGTTTATTGTTAGGCTTGGTATGGATTGTGATTT 419 Query 420 GTATACTGGTAATGCGCTTATGAATATGTATGCTAAGCTTCTTGG 464 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GTATACTGGTAATGCGCTTATGAATATGTATGCTAAGCTTCTTGG 464 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 101103897630 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5