BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479848
Length=2040
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2447 0.0
> AT3G23330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:8347200-8349347 FORWARD LENGTH=2148
Length=2148
Score = 2447 bits (1325), Expect = 0.0
Identities = 1502/1588 (95%), Gaps = 9/1588 (1%)
Strand=Plus/Plus
Query 457 CTTCTTGGAATAGATAGTGTGAGGAAAGTTTTTGAATTGATGCCTAGAAAGGATGTTGTG 516
||| |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 566 CTT-TTGGAATAGACAGTGTGAGGAGGGTTTTTGAAGTGATGCCTAGAAAGGATGTTGTG 624
Query 517 TCGTATAATACTGTCATTGCAGGGTATGCACAAAGTGGAATGTATGAAGATGCTTTGAGA 576
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 625 TCGTATAATACTATCATTGCAGGGTATGCACAGAGTGGAATGTATGAAGATGCTTTGAGA 684
Query 577 ATGGTTAGGGAGATGGGAACTAGTGATTTAAAGCCTGATGCTTTCACTTTGTCTAGTGTG 636
|||||||||||||||||||||| ||| |||||||||||| |||| |||||||||||||||
Sbjct 685 ATGGTTAGGGAGATGGGAACTACTGACTTAAAGCCTGATTCTTTTACTTTGTCTAGTGTG 744
Query 637 CTTCCGATATTTTCTGAGTATGTGAATGTTCTTAAGGGAAAAGAGATTCATGGGTATGTG 696
|||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct 745 CTTCCGATATTTTCTGAGTATGTGGATGTTATTAAGGGGAAAGAGATTCATGGGTATGTG 804
Query 697 ATTAGGAAAGGGATTGATAGTGATGTATATATTGGGAGTAGTTTGGTTGATATGTATGCT 756
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 ATTAGGAAAGGGATTGATAGTGATGTATATATTGGGAGTAGTTTGGTTGATATGTATGCG 864
Query 757 AAAAGTGCTCGGATTGAAGACTCGGAAAGAGTGTTTTCTCACTTGTATCGTCGGGATAGT 816
||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| ||
Sbjct 865 AAAAGTGCTCGGATTGAAGACTCTGAAAGAGTGTTTTCTCGCTTGTATTGTCGGGATGGT 924
Query 817 ATCTCGTGGAACTCGCTTGTAGCTGGGTATGTACAGAACGGTAGATACAATGAGGCTCTG 876
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 925 ATCTCGTGGAACTCGCTTGTAGCTGGGTATGTACAGAATGGTAGATACAATGAGGCTCTG 984
Query 877 AGATTATTTAGGCAAATGGTGAGCGCAAAGGTTAGGCCAGGAGCTGTGGCGTTCTCAAGT 936
||||| || ||||||||||||| ||||||||||| |||||| ||||||||||||||||||
Sbjct 985 AGATTGTTCAGGCAAATGGTGACCGCAAAGGTTAAGCCAGGGGCTGTGGCGTTCTCAAGT 1044
Query 937 GTGATTCCTGCTTGTGCTCACCTAGCTACCTTGCACCTTGGGAAACAACTTCACGGATAT 996
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1045 GTGATTCCTGCTTGTGCTCACCTAGCCACCTTGCACCTTGGGAAACAACTTCACGGATAT 1104
Query 997 GTATTAAGAGGTGGCTTTGGGAGAAATATATTCATAGCTAGTGCACTTGTCGATATGTAC 1056
|||||||| ||||||||||| || || ||||||||||||||||||||||| |||||||||
Sbjct 1105 GTATTAAGGGGTGGCTTTGGCAGTAACATATTCATAGCTAGTGCACTTGTTGATATGTAC 1164
Query 1057 TC-AAAGTGTGGAAATATTCAGGCTGCTAGGAAGATTTTTGACAGGATGAATCTACACGA 1115
|| ||| ||||| |||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 1165 TCGAAA-TGTGGGAATATTAAGGCTGCTAGGAAGATTTTTGACAGGATGAATGTACTCGA 1223
Query 1116 CGAAGTATCATGGACGGCTATTATAATGGGTCATGCGTTACATGGTCATGGGCATGAAGC 1175
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1224 TGAAGTATCATGGACGGCTATTATAATGGGGCATGCGTTACATGGTCATGGGCATGAAGC 1283
Query 1176 AGTTTCGTTGTTTGAGGAGATGAAACGGCAAGGAGTGAAACCAAATCAAGTGGCCTTTGT 1235
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 1284 AGTTTCGTTGTTTGAGGAGATGAAACGACAAGGAGTGAAACCGAATCAAGTGGCATTTGT 1343
Query 1236 TGCTGTACTAACGGCTTGTAGTCATGTGGGGTTGGTAGATAAGGCGTGGGGATATTTCAA 1295
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1344 TGCTGTACTAACGGCTTGTAGTCATGTGGGGTTGGTAGATGAGGCATGGGGATATTTCAA 1403
Query 1296 CAGCATGACTAATGTTTACGGTTTAAACCAGGAGTTAGAACATTATGCAGCTGTAGCAGA 1355
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1404 CAGCATGACTAAGGTTTACGGTTTAAACCAGGAGTTAGAACATTATGCAGCTGTAGCGGA 1463
Query 1356 TCTTCTAGGCCGTGCAGGGAAACTGGAAGAAGCATACGATTTCATTTCAAACATGCGTGT 1415
||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| ||||
Sbjct 1464 TCTTCTAGGCCGTGCAGGGAAGCTGGAAGAAGCATACAATTTCATTTCAAAGATGTGTGT 1523
Query 1416 TGAAC-AGACGGGTAGTGTCTGGTCTACCTTATTGTCTTCTTGCAGCGTTCACAAGAATC 1474
||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 TGAACCA-ACTGGTAGTGTCTGGTCTACCTTATTGTCTTCTTGCAGCGTTCACAAGAATC 1582
Query 1475 TTGAGCTAGCCGAGAAGGTAGCAGAGAAGATATTCACAATTGATTCTGAAAACATGGGAG 1534
||||| | || ||||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct 1583 TTGAGTTGGCTGAGAAGGTAGCGGAGAAGATATTCACTGTCGATTCTGAAAACATGGGAG 1642
Query 1535 CTTATGTTTTGATGTGCAATATGTATGCGTCTAATGGGAGATGGAAAGAAATGGCGAAAC 1594
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1643 CTTATGTTTTGATGTGCAATATGTATGCGTCTAATGGAAGATGGAAAGAAATGGCGAAAC 1702
Query 1595 TGAGATTAAG-AGTGAGGAAAAAAGGATTACGTAAAAAGCCAGCTTGTAGTTGGATCGAA 1653
| ||||| | | ||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 1703 TAAGATTGCGTA-TGAGGAAGAAAGGATTGCGGAAAAAGCCAGCTTGTAGTTGGATCGAA 1761
Query 1654 ATGAAAAACAAGACTCATGGGTTTGTTTCAGGAGATAGATCGCATCCGAGTATGGACA-G 1712
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1762 ATGAAAAACAAGACTCATGGATTTGTTTCAGGAGATAGATCGCATCCGAGTATGGACAAG 1821
Query 1713 AATCAACGAGTTTCTTAGAGCTGTAATGGAACAGATGGAGAAAGAAGGTTATGTTGCAGA 1772
| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1822 A-TCAACGAGTTTCTTAAAGCTGTAATGGAACAGATGGAGAAAGAAGGGTATGTTGCAGA 1880
Query 1773 CACAAGCGGCGTGCTTCACGATGTAGACGAAGAGCATAAGAGAGAGCTTTTGTTTGGACA 1832
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1881 CACAAGCGGCGTGCTTCACGATGTAGACGAAGAGCATAAGAGAGAGCTTTTGTTCGGACA 1940
Query 1833 CAGCGAGAGATTGGCTGTTGCATTTGGTATCATCAACACAGAACCTGGCACGACGATTAG 1892
||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1941 CAGTGAGAGATTGGCTGTTGCCTTTGGTATCATCAACACAGAACCTGGCACGACAATTAG 2000
Query 1893 AGTCACTAAGAACATAAGGATTTGCACGGATTGTCATGTCGCGATCAAGTTTATCTCGAA 1952
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2001 AGTCACTAAGAATATAAGGATATGCACGGATTGTCATGTCGCAATCAAGTTTATCTCGAA 2060
Query 1953 GATCACGGAGAGAGAGATTATTGTTAGGGATAATAGCAGATTCCACCATTTTAACCGTGG 2012
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2061 GATCACGGAAAGAGAGATTATCGTTAGGGATAATAGCAGATTCCACCATTTCAACCGTGG 2120
Query 2013 AAGCTGTTCTTGTGGAGACTATTGGTAA 2040
|| ||||||||||||||| |||||||||
Sbjct 2121 AAACTGTTCTTGTGGAGATTATTGGTAA 2148
Score = 752 bits (407), Expect = 0.0
Identities = 446/465 (96%), Gaps = 2/465 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTCATCAAAAGCCCTAATCAAAACCCTGATTAAGAACCCTACTCGCATCAAATCC 60
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 1 ATGAGTTCATCAAAAGCCCTAATCAAAACCCTGATTAAGAATCCAACTCGAATCAAATCC 60
Query 61 AAATCTCAAGCTAAGCAGCTTCACGCGCAATTCATCAGAACTCAATCACTCTCTCACACA 120
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 61 AAATCTCAAGCGAAGCAGCTTCACGCACAATTCATCAGAACTCAATCACTCTCTCATACA 120
Query 121 TCTGCTTCAATCGTAATCTCAATCTACACAAACCTTAAACTTTTGCACGAAGCTTTGCTT 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAGCTTCAATCGTAATCTCAATCTACACAAACCTTAAACTTTTGCACGAAGCTTTGCTT 180
Query 181 GTTTTCAAAACCCTCGAGTCTCCTCCTGTTCTCGCATGGAAGTCAGTAATCAGATGCTTC 240
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CTTTTCAAAACCCTTAAGTCTCCTCCTGTTCTAGCATGGAAGTCAGTAATCAGATGCTTC 240
Query 241 ACCGACCAGTCTTTATTCTCC-CGTGCTTTGGCTTCGTTCGTGGAAATGCGAGCTTCTGG 299
|||||||||||| |||||||| | || || |||||||| ||||||||||||||||||||
Sbjct 241 ACCGACCAGTCTCTATTCTCCAAG-GCGTTAGCTTCGTTTGTGGAAATGCGAGCTTCTGG 299
Query 300 GAGATGCCCAGATCACAATGTGTTTCCTTCTGTGTTGAAATCGTGTACGATGATGATGGA 359
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 GAGATGCCCAGATCACAATGTGTTTCCTTCTGTTTTGAAATCGTGTACGATGATGATGGA 359
Query 360 TTTGAGATTTGGTGAGTCTGTTCATGGGTTTATTGTTAGGCTTGGTATGGATTGTGATTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTTGAGATTTGGTGAGTCTGTTCATGGGTTTATTGTTAGGCTTGGTATGGATTGTGATTT 419
Query 420 GTATACTGGTAATGCGCTTATGAATATGTATGCTAAGCTTCTTGG 464
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTATACTGGTAATGCGCTTATGAATATGTATGCTAAGCTTCTTGG 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101103897630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5