BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479849
Length=1694
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23340.1 | Symbols: ckl10 | casein kinase I-like 10 | chr3:8... 2396 0.0
AT4G14340.1 | Symbols: CKI1, CKL11 | casein kinase I | chr4:824... 1160 0.0
> AT3G23340.1 | Symbols: ckl10 | casein kinase I-like 10 | chr3:8350803-8353959
FORWARD LENGTH=1741
Length=1741
Score = 2396 bits (1297), Expect = 0.0
Identities = 1610/1750 (92%), Gaps = 66/1750 (4%)
Strand=Plus/Plus
Query 1 AAATAAATAACATCCGTCAAAACCATCTGTCTCTG-TTTCTCTTTCGTCTCCTCTACTTC 59
||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 1 AAATAAATAACATCCGTCAAAACCATCTGTCTCTGTTTTCTCATTCATCTCCTCTACTTG 60
Query 60 TCCAGTCGGTCATCAAACCATTTCTTCAAGATTATCCTCAGAAAATATAGAAACTCCTCA 119
| ||||||||||||||| || |||||||| |||||||||| ||||||| ||||||||||
Sbjct 61 TTTAGTCGGTCATCAAACTATCTCTTCAAGTTTATCCTCAG-AAATATACAAACTCCTCA 119
Query 120 GAAAATTCTTTCTGAACTTGGGTTTAGCTTCATTTTACTATTTTGTAATGATGATAATG- 178
|||||||||||| | || ||||| ||||| || ||| |||||||| |||||| ||||
Sbjct 120 GAAAATTCTTTC-G---TTTGGTTT-GCTTCGTTCTACAATTTTGTATTGATGAGAATGT 174
Query 179 ----TT-A-T-ATTAA--G--TG------C-----T---T-TGTAATTAGTATTTATTGG 212
|| | | ||||| | || | | | ||||| |||||||||||||
Sbjct 175 TATATTGAGTCATTAACCGTTTGATAAATCGTATTTGGCTCTGTAAGTAGTATTTATTGG 234
Query 213 AATCGAAACGATGGATCATGTATTCGGTGGCAAGTTCAAGTTAGGTAGAAAGATTGGTAG 272
|| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 235 TATTGAAACGATGGATCATGTAATCGGTGGCAAGTTCAAGTTAGGTAGGAAGATTGGTAG 294
Query 273 TGGATCATTTGGTGAACTTTATATAGGGATTAATGTTCAAACTGGAGAAGAAGTTGCTCT 332
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 295 TGGATCATTCGGTGAACTTTATATTGGGATTAATGTTCAAACTGGAGAAGAAGTTGCTCT 354
Query 333 TAAACTGGAACCTGTGAAGACAAAGCATCCTCAGCTCCATTATGAATCAAAAGTATACAT 392
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TAAGCTGGAACCTGTGAAGACAAAGCATCCTCAGCTCCATTATGAATCAAAAGTATACAT 414
Query 393 GCTTCTTCAAGGAGGGACGGGTGTTCCGCATCTCAAATGGTTCGGTGTTGAGGGGAATTA 452
||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 415 GCTTCTTCAAGGAGGGACGGGTGTTCCGCATATCAAATGGTTCGGTGTTGAGGGTAACTA 474
Query 453 CAATTGTATGGCTATTGACCTTCTTGGTCCAAGCTTGGAAGACTTGTTCAACTATTGCAC 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CAATTGTATGGCTATTGACCTTCTTGGTCCAAGCTTGGAAGACTTGTTCAACTATTGCAC 534
Query 513 TCGGAATTTTTCTTTGAAAACTGTTCTAATGCTTGCTGATCAGTTAATAAACAGAGTTGA 572
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TCGGAGTTTTTCTTTGAAAACTGTTCTAATGCTTGCTGATCAGTTAATAAACAGAGTTGA 594
Query 573 GTATATGCATTCTCGAGGATTTCTTCACCGTGATATTAAACCGGACAACTTTTTGATGGG 632
||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 595 GTACATGCACTCTCGAGGATTTCTTCACCGTGATATTAAACCGGATAACTTTTTGATGGG 654
Query 633 TCTCGGTCGCAAAGCAAACCAGGTGTACATTATTGATTATGGGCTTGCTAAAAAGTATAG 692
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 655 TCTCGGTCGCAAAGCAAACCAAGTGTACATTATTGATTATGGGCTTGCTAAAAAGTATAG 714
Query 693 AGATCTTCAGACACACAAGCATATACCCTACAAGGAAAATAAGAATCTGACTGGAACTGC 752
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 715 AGATCTTCAGACACACAAGCATATACCTTACAGGGAAAATAAGAATCTGACTGGAACTGC 774
Query 753 TCGGTATGCAAGTGTCAACACACACCTTGGGATTGAGCAAAGTAGGCGAGATGATCTGGA 812
| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 775 TAGGTATGCAAGTGTCAACACACACCTTGGCATTGAGCAAAGTAGACGAGATGATCTGGA 834
Query 813 GTCTCTTGGCTATGTGT-TGATGTATTTTCTACGAGGAAGTCTACCATGGCAAGGTCTAA 871
||||||||| ||||| | ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 835 GTCTCTTGGTTATGT-TCTGATGTATTTTATACGAGGAAGTTTACCATGGCAAGGTCTAA 893
Query 872 AAGCTGGTACCAAGAAACAGAAATATGAAAAGATTAGTGAAAAGAAGATGCTTACTCCAG 931
|||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||| |
Sbjct 894 AAGCTGGTACTAAGAAACAGAAATACGAGAAGATAAGTGAAAAGAAGATGCTTACTCCCG 953
Query 932 TAGAGGTTCTTTGTAAGTCATTTCCATCAGAGTTCACATCATATTTCCATTACTGTCGAT 991
||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| || |
Sbjct 954 TAGAGGTTCTTTGCAAGTCATATCCATCCGAGTTCACATCATATTTCCATTACTGCCGTT 1013
Query 992 CATTGAGGTTTGAGGATAAACCAGATTATTCATATCTAAAAAGACTTTTCAGAGACCTTT 1051
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1014 CATTGAGGTTTGAGGATAAACCAGATTATTCATATCTGAAAAGACTTTTCAGGGACCTTT 1073
Query 1052 TTATTCGGGAAGGTTATCAGTTTGACTATGTGTTTGATTGGACAATCTTGAAATATCCTC 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TTATTCGGGAAGGTTATCAGTTTGACTATGTGTTTGATTGGACAATCTTGAAATATCCTC 1133
Query 1112 AGAGTGGCTCTATTTCGAAACCAAGGCCAAATCCAAAACCAGCTCTAGACCCTCCAGGAC 1171
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1134 AGAGTGGCTCTATTTCAAAACCAAGGCCAAATCCTAAACCAGCTCTAGACCCTCCAGGAC 1193
Query 1172 CATCTGCGGAACGAAATGAAAAGCCTATAGTGGGGCAGGATCTGCGAGAAAGATTCTCAG 1231
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1194 CATCTGCAGAACGAAATGAAAAGCCTATAGTGGGGCAGGATCTACGAGAAAGATTCTCAG 1253
Query 1232 GTGCAGTTGAAGCATTCGCTAGACGGAATGTAACGAGTCATGGTATTCGCCCTAAGCACA 1291
||||||||||||||||||||||||| |||||| |||||||||| |||||||| |||||||
Sbjct 1254 GTGCAGTTGAAGCATTCGCTAGACGAAATGTACCGAGTCATGGCATTCGCCCGAAGCACA 1313
Query 1292 TTTTTTCTGATGATGCTTCCAAAGAAGTGCAAGTGTCTGAAAAAGCCCGAAATGAGATTG 1351
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1314 TTTTTTCTGATGATGCTTCCAAAGAAGTGCAAGTGTCTGAAAAAACCCGAAATGAGATTG 1373
Query 1352 CTACAAAGATGGCAGTGATGTCAAGCAGCCAACCTGGCTCATCAGGTGAGCTTAGTGAAA 1411
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 1374 CTACAAAGATGGCAGTGATGTCTAGCAGCCAACCTGGCTCATCAGGTGAGCTGAGTGAGA 1433
Query 1412 ACCGCTCAAGTAAACTTTTTACAAGCGGTGCCCAAAAGATTCAACCGG-GTCAAGAAACT 1470
|||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||||
Sbjct 1434 ACCGCTCAAGTAAACTTTTTTCAAGCAGTGCCCAAAAGATTCAACCGGTG-CAAGAAACT 1492
Query 1471 AAGTCATCCACAAGGCTTGGGCGTGATGACGGCCTGAGAAGCTTCGATATGCTTACTATC 1530
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 AAGTTATCTGCAAGGCTTGGGCGTGATGACGGCCTGAGAAGCTTCGATATGCTTACTATC 1552
Query 1531 GGTTCTGGAAAGCGGAAATGAGT-A-----G-----TT-----T-G-A------AAGAAT 1566
||||| ||||||||||||||||| | | || | | | ||||||
Sbjct 1553 GGTTCCGGAAAGCGGAAATGAGTCACTCAAGAAAGCTTGCGGATCGGAGTTTGGAAGAAT 1612
Query 1567 CTGAAAATGTGTAAACAATGAAAAACTCTGTCTCCCGCTTT--GTGTTTATAGTTGTTCA 1624
|||||||||||||||||||| |||||| ||||||| |||| |||||||||||| ||||
Sbjct 1613 CTGAAAATGTGTAAACAATGTAAAACT--GTCTCCCACTTTATGTGTTTATAGTTCTTCA 1670
Query 1625 TAAAATTTTATAAAGTTGTATATGTAACTTGTAACACAAGTACTTTGTTTATATTAGTTC 1684
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 TAGAATTTTATAAAGTGGTATATGTAACTTGTAACACAAGTACTTTGTTTATATTAGTTC 1730
Query 1685 AAATTTGGTC 1694
||||||||||
Sbjct 1731 AAATTTGGTC 1740
> AT4G14340.1 | Symbols: CKI1, CKL11 | casein kinase I | chr4:8248286-8251998
REVERSE LENGTH=1950
Length=1950
Score = 1160 bits (628), Expect = 0.0
Identities = 919/1060 (87%), Gaps = 17/1060 (2%)
Strand=Plus/Plus
Query 211 GGAATCGAAACGATGGATCATG-TATTCGGTGGCAAGTTCAAGTTAGGTAGAAAGATTGG 269
|||||| ||| ||||||||| | || |||| || ||||| ||||| ||||| ||| ||||
Sbjct 338 GGAATC-AAAAGATGGATCACGTTA-TCGGCGGGAAGTTTAAGTTGGGTAGGAAGCTTGG 395
Query 270 TAGTGGATCATTTGGTGAACTTTATATAGGGATTAATGTTCAAACTGGAGAAGAAGTTGC 329
||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||| ||
Sbjct 396 AAGTGGATCATTCGGTGAACTTTATTTAGGGATCAATATTCAAACTGGAGAAGAAGTCGC 455
Query 330 TCTTAAACTGGAACCTGTGAAGACAAAGCATCCTCAGCTCCATTATGAATC-AAAAGTAT 388
|||| ||||||||||||||||| | ||||||||| || || |||||||| |||| |||
Sbjct 456 AGTTAAGCTGGAACCTGTGAAGACGAGGCATCCTCAACTGCAGTATGAATCGAAAA-TAT 514
Query 389 ACATGCTTCTTCAAGGAGGGACGGGTGTTCCGCATCTCAAATGGTTCGGTGTTGAGGG-G 447
| ||| ||||||||||||| ||||||||||| ||||| |||||||| || |||||||| |
Sbjct 515 ATATGTTTCTTCAAGGAGGAACGGGTGTTCCCCATCTGAAATGGTTTGGAGTTGAGGGTG 574
Query 448 AATTACAATTGTATGGCTATTGACCTTCTTGGTCCAAGCTTGGAAGACTTGTTCAACTAT 507
|| |||| ||| |||| ||| || |||||||| ||||||||||| ||||| ||||| ||
Sbjct 575 AA-TACAGTTGCATGGTTATCGATCTTCTTGGGCCAAGCTTGGAGGACTTATTCAATTAC 633
Query 508 TGCACTCGGAAT-TTTTCTTTGAAAA-CTGTTCTAATGCTTGCTGATCAGTTAATAAACA 565
|||| | |||| ||||| || |||| ||||| |||||||||| ||||| || ||| |
Sbjct 634 TGCAAGC-GAATATTTTCATT-AAAATCTGTTTTAATGCTTGCAGATCAATTGATATGTA 691
Query 566 GAGTTGAGTATATGCATTCTCGAGGATTTCTTCACCGTGATATTAAACCGGACAACTTTT 625
||||||||||||||||||| || || ||||||||||| ||||||||||| ||||||||||
Sbjct 692 GAGTTGAGTATATGCATTCGCGGGGTTTTCTTCACCGCGATATTAAACCAGACAACTTTT 751
Query 626 TGATGGGTCTCGGTCGCAAAGCAAACCAGGTGTACATTATTGATTATGGGCTTGCTAAAA 685
|||||||||| || |||| ||||||||||||||| || ||||||||||| ||||||||||
Sbjct 752 TGATGGGTCTTGGGCGCAGAGCAAACCAGGTGTATATCATTGATTATGGCCTTGCTAAAA 811
Query 686 AGTA-TAGAGATCTTCAGACACACAAGCATATACCCTACAAGGAAAATAAGAATCTGACT 744
| || || |||||||||||||| ||||||||||| |||| |||||| |||||||| ||
Sbjct 812 AATACAAG-GATCTTCAGACACAAAAGCATATACCATACAGGGAAAACAAGAATCTTACA 870
Query 745 GGAACTGCTCGGTATGCAAGTGTCAACACACACCTTGGGATTGAGCAAAGTAGGCGAGAT 804
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 871 GGAACTGCTCGGTATGCAAGTGTGAACACACACCTTGGGATTGAGCAAAGTAGAAGAGAT 930
Query 805 GATCTGGAGTCTCTTGGCTATGTGTTGATGTATTTTCTACGAGGAAGTCTACCATGGCAA 864
||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 931 GATCTGGAGTCACTTGGTTATGTGTTGATGTATTTTCTACGAGGAAGTCTTCCGTGGCAA 990
Query 865 GGTCTAAAAGCTGGTACCAAGAAACAGAAATATGAAAAGATTAGTGAAAAGAAGATGCTT 924
||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 991 GGTTTAAAAGCTGGTACGAAGAAGCAGAAATATGACAAGATTAGTGAAAAGAAGATGCTT 1050
Query 925 ACTCCAGTAGAGGTTCTTTGTAAGTCATTTCCATCAGAGTTCACATCATATTTCCATTAC 984
||| | |||||| |||||| ||||| | |||||||||||||||||| || |||||||||
Sbjct 1051 ACTTCTGTAGAGACTCTTTGCAAGTCGTATCCATCAGAGTTCACATCGTACTTCCATTAC 1110
Query 985 TGTCGATCATTGAGGTTTGAGGATAAACCAGATTATTCATATCTAAAAAGACTTTTCAGA 1044
||||| |||||||| |||||||| ||||| |||||||||||||| | ||||||||| ||
Sbjct 1111 TGTCGTTCATTGAGATTTGAGGACAAACCGGATTATTCATATCTGAGAAGACTTTTTAGG 1170
Query 1045 GACCTTTTTATTCGGGAAGGTTATCAGTTTGACTATGTGTTTGATTGGACAATCTTGAAA 1104
|| ||||| ||||| |||||||||||| |||| |||||||||||||||||||||| |||
Sbjct 1171 GATCTTTTCATTCGTGAAGGTTATCAGCTTGATTATGTGTTTGATTGGACAATCTCGAAG 1230
Query 1105 TATCCTCAGAGTGGCTCTATTTCGAAACCAAGGCCAAATCCAAAACCAGC-TCTAGACCC 1163
|||||||||| |||||||| ||||| ||||||||||| ||||| |||||| | | |||||
Sbjct 1231 TATCCTCAGATTGGCTCTAGTTCGAGACCAAGGCCAACTCCAAGACCAGCGT-TGGACCC 1289
Query 1164 TCCAGGACCATCTGCGGAACGAAATGAAAAGCCTATAGTGGGGCAGGATCTGCGAGAAAG 1223
|||||||||| |||| ||| || ||||||||||| ||| || ||||| ||||||| |||
Sbjct 1290 TCCAGGACCACCTGCAGAAAGAGCTGAAAAGCCTACAGTCGGACAGGACCTGCGAGGAAG 1349
Query 1224 ATTCT-CAGGTGCAGTTGAAGCATTCGCTAGACGGAATGT 1262
||| | |||||||| |||| |||||| | ||||| |||||
Sbjct 1350 ATT-TACAGGTGCAATTGAGGCATTCACCAGACGAAATGT 1388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83734509060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5