BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479852
Length=2455
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2940 0.0
> AT3G23370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:8357585-8360865 FORWARD LENGTH=2537
Length=2537
Score = 2940 bits (1592), Expect = 0.0
Identities = 1927/2089 (92%), Gaps = 22/2089 (1%)
Strand=Plus/Plus
Query 380 TGTGTCTCTTCTAGTATAAAAGAAGAATCTCCAGTCTCTGAAATGGGATCTGAAGATGCA 439
||| || |||| |||||||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 455 TGTATCACTTCGAGTATAAAAGAAGAATCTTTTGTCTCGGAAATGGGATCTCAAGATGCA 514
Query 440 TCTCAAAGTGTTGCTGCAGAAAACAAGAATTGTATCACTTCGAG-AGTAAAAGAAGAATC 498
|||||||||||||||| |||||||||||| |||||| |||| || | |||||||||||||
Sbjct 515 TCTCAAAGTGTTGCTGTAGAAAACAAGAACTGTATCTCTTCTAGTA-TAAAAGAAGAATC 573
Query 499 GCCAGTCTCTGAAATGGGATCTCAAGATGTATCTCAAAGTGTTGCAGGAATTGAGACTCC 558
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 574 TTCAGTCTCTGAAATGGGATCTCAAGATGCATCTCAAAGTGTTGCAGGAATTGAGGCTTG 633
Query 559 TGAGAAGAGAGAAAGCATATTTGTAAGTAATGAGAGATTAGATAATATTAATAGGTTAGA 618
|| |||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct 634 TGGGAAGAGAGAAAGCATAACTGTAAGTAATGACAGATTAGGTAATATTAATAGGTTAGA 693
Query 619 TAGCTTGGAGTTTGGACAGGAGAAGGTGTTGAGATCGATACGCACTGAAAGAGCGGATCC 678
| ||||||||| ||| |||| ||||||||||||||| |||||||||||||| | ||||||
Sbjct 694 TGGCTTGGAGTCTGGGCAGGGGAAGGTGTTGAGATCAATACGCACTGAAAGGGTGGATCC 753
Query 679 TTCCGAGGAACAAAGTTCTAAAGATGTC-GTGTTAGGTTTCTTGACTGAAGAAGTATCGG 737
||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 754 TTCTGAGGAACAAAGTTCTAAAGATGTCACT-TTAGGTTTCTTGACTGAAGAAGTATCGG 812
Query 738 AAAGTCAGACATCATCTGGGGAAAATATAGGGAAGTTGCAGCCTGCGAAAGGGCTATTCG 797
||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct 813 AAAGTCAGACATCATCTAGGAAAAATATGGGGAAGTTGCAGCCTGCGAAAGGGCTATTCG 872
Query 798 ATAAAGCGAAGCCACCTCAGAATAGTCTCTCGAAGTTGTTTGTAAACTCGGATCCATTTA 857
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 873 ATAAAGTGAAGCCACCTCAAAATAGTCTCTCGAAGTTGTTTGTAAACTCGGATCCATATA 932
Query 858 AAGAAGTTAAGCTTCCTCTGAAATTTGAGGCTTTGAGTAACAGTGATTCCAGTATGTCTA 917
|||| ||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||
Sbjct 933 AAGAGGTTAAGCATCCTCTGAGATTTGAGACTTTGAGTAACAGTAATTCCAGTATGTCTA 992
Query 918 CTGGAGAATCCTGTAGTGATGC-GGATGATCAACACGGCCTATTTGGTAAGATGCTGTCT 976
|||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||
Sbjct 993 CTGGAGAATCCTGTAGTGATGCAGG-TGATCAACACAGCCTATTTGGTAAGATGCTGTCT 1051
Query 977 GATCCTGGCCAGAAAATTAAAAGTATTTCCAAGGAAAATGATAAGCACAGGTTGTCGGAT 1036
||||||| |||| ||||||||||||| |||| ||||||||| |||||||||||||||||
Sbjct 1052 GATCCTGTCCAGGAAATTAAAAGTATCCCCAACGAAAATGATGAGCACAGGTTGTCGGAT 1111
Query 1037 GTTCCTCAAAATCTCGA-CTCTTTGACATCCGTTCTATTAAGGGATTGGATTGATGATCA 1095
| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1112 GCTCCTCAAAATCTC-AGCTCTTTGACATCCGTTCTATTAAGGGATTGGATTGATGAACA 1170
Query 1096 GAAGAGTGGAGACCTGGCTGCGATTAGAGAAAGGAAAAGTATTTTTTCGCTTGAAAGTTC 1155
|| ||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1171 GAGGAGTGAAGACCTGGCTGCTATTAGAGAAAGGAAAAGTATATTTTCGCTTGAAAGTTC 1230
Query 1156 TAGAAACACTGTTGCACCTATGGCAGTGGGTAGTATGAAGAAGTTGATGGACTCCCTTAA 1215
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1231 TAGAAACACTGTTGCACCTATGGCAGTGGGTACTATGAAGAAGTTGATGGACTCCCTTAA 1290
Query 1216 CCTCCCAACTGACAATGGCATGGACGCAGAAGCCAACTCGTTGAATGCTAGTAGTAGTGA 1275
| | |||||||||||||||| || ||||||||||||||||||||| ||| |||||| ||
Sbjct 1291 CTTTCCAACTGACAATGGCACAGATGCAGAAGCCAACTCGTTGAATTCTAATAGTAGAGA 1350
Query 1276 AGAAAAATCTATATCCAAAAGCAATTCTGCATTTCAAAAAAGTGATGGTTTTTGTGCGAC 1335
||| |||| |||||| || ||||||||||| | ||||| |||||| ||||||||||||
Sbjct 1351 AGAGAAATGGATATCCGAAGGCAATTCTGCAATGCAAAACAGTGATCGTTTTTGTGCGAT 1410
Query 1336 AGAGGAAGAAGAATCCAAAGGGGAAACTTTTGTAATGGAAAACCAATCATTGTTCAGTCA 1395
||||||||||||| || |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1411 AGAGGAAGAAGAACCCCAAGGGGAAACTTTTGTAATGGAAACCCAATCATTGTGCAGTCA 1470
Query 1396 GGCCGCTTTGGCA-GCTACCACCGCGAATCCTAAGGTAACAAAAAAGAGTTTGTTCGCAT 1454
|| | |||||| | |||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct 1471 GGACACTTTGG-ACGCTACCACCGTGAATCCTAAGGTAACAAAAAAGAGTTTCTTGGCAT 1529
Query 1455 TATCTGCTGGAGAGCACTCTCCTAACAAAGTACTGCTAAGGTTTTTGCAAGAATCATGTC 1514
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1530 TATCTGCTGGAGAACACTCTCCTAACAAAGTACTGCTAAGGTTTTTGCCAGAATCATCT- 1588
Query 1515 A-GAAGAAACACATCGTTGAA--GTGTT-TTCTCAGTTTGGAGCCGTTTTGGATGTACAA 1570
| |||||||||||| ||| || || || |||||||||||||||||||||| ||||||||
Sbjct 1589 ATGAAGAAACACATTGTTAAAGCGTTTTCTTCTCAGTTTGGAGCCGTTTTGCATGTACAA 1648
Query 1571 GAAATTCCCTCTTTTGAAGGGTGCATTTACAAAGATGCTCTCTTAACTTTTGAGACTAAC 1630
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1649 GAAATTCCCTCTATTGAAGGGTGCATTTACAAAGATGCTCTCTTAACTTTTGAGACTAAC 1708
Query 1631 ACTGCAGTCAAGAAGGCTCTTGAGAAAGGTAGA-GTGACGGTGATGAATAACAATGCAGT 1689
|||||||||||||| ||||| ||||||| | ||||||||||||||| ||||| ||||
Sbjct 1709 ACTGCAGTCAAGAAAGCTCTCAAGAAAGG-CCATGTGACGGTGATGAATTACAATACAGT 1767
Query 1690 TGTCGAGGCAACTTCTCAGGAAGACATGGTAGAAAGGATTTGCATTCCGGATCTCATTGG 1749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 TGTCGAGGCAACTTCTCAGGAAGACATGGTAGAAAGGATTTGCATTCCGGATCTCATTGG 1827
Query 1750 CGATCCAGATGTGCCTATTGCATTGGTGAAGGAACCATCCCGAACAGTTAAGATTCATCC 1809
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1828 CGATCCAGATGTGCCTGTTGCATTGGTGAAGGAACCAGCCCGAACAGTTAAGATTCATCC 1887
Query 1810 ACTGACGCACGATTTTAGTTCAAATCAGATCAAAGAAGCGCTAAAGTTCTGTAGGAGCAA 1869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1888 ACTGACGCACGATTTTAGTTCAAATCAGATCAAAGAAGCGCTAAAGTTCTGTAGGAGCAA 1947
Query 1870 CATATCTAAAATCATCTTGGGTTTATCGAGAACAGATGCTTTCGTGGAGTTTGAGACAGA 1929
||||||||| | | |||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1948 CATATCTAAGTTTACCTTGGGTTCATCGAGAACAGATGCTTTCGTGGAGTTTGAGACGGA 2007
Query 1930 AGACGGCAAAGAGAGAGCACTTGCAGAGCATTCAATCAGCATATGCAATACACAATTGTT 1989
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2008 AGACGGCAAAGAGAGAGCACTTGCGGAGCATTCAATCAGCATATGCAACACACAATTGTT 2067
Query 1990 TATCTCTAGGATTGATATACCGAGGACAACCGTGGCAAGGATTTCAAACTTGTCGAAATC 2049
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2068 TATCTCGAGGATTGATATACCGAGGACAATCGTGGCAAGGATTTCAAACTTGTCGAAATC 2127
Query 2050 AGCAATGAAAGATTTACGAGCTTTGTGTGTACCTTATGGACAAATCAAACAGGTATATAT 2109
|||||||| |||| ||||||| |||||||||||||||||||| |||| | ||| |||||
Sbjct 2128 AGCAATGAGAGATGTACGAGCATTGTGTGTACCTTATGGACAGATCAGAGGGGTGTATAT 2187
Query 2110 CAGGGGAAAC-GGTGTTGTAGATGTGCTTTTCGATGTCTCTGAGTGGCCAAACATGCTCA 2168
|||||||| | ||||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct 2188 CAGGGGAA-CTGGTGTTGCGGATGTGTTTTTCGATATCTCTGAGTGGCCAAACATGCTCG 2246
Query 2169 ACATTCTCAACAGCTTGAATGGTATGGAGATAGATGGTAAGAAGTTGGTGGTTCGACCTG 2228
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2247 CCATTCTCAACAGCATGAATGGTATGGAGATAGATGGTAAGAAGTTGGTGGTTCGACCTG 2306
Query 2229 CAACAACAGTAATACCTCCTGTAATTTTGAGGGTATTGTGGAAAGATCCTCAAGAAAAGA 2288
||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||
Sbjct 2307 CAACAACAGTAATACCTCCTGAAATATTGAGGGTTTTGTGGAAAGATCCTCGAGAAAAGA 2366
Query 2289 GATATGTGAAAAGTGTAATTCACAATCTGGTGAGAGAGATTGAGCAGCCTTTAGATGCAA 2348
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2367 GATATGTGAAAAGTGTAATTCAGAATCTGGTGAGAGAGATTGAGCAGCCTTTAGATGCAA 2426
Query 2349 CTCGTTGCCACACACTCATGACAGATTTACTAGTATAGCTTCATATATTCTTTAACTC-T 2407
|||||||||||||||| || ||||| |||||| ||||||||||| || |||||||||| |
Sbjct 2427 CTCGTTGCCACACACTTATAACAGAATTACTACTATAGCTTCATGTACTCTTTAACTCAT 2486
Query 2408 TCA-AGATTAGAGCCATTATTTTTGTAAAACGAATCAAAAGAGAGAATT 2455
| | || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 2487 T-AGAGCCTAGAGCCATTGTTTTTGTAAAACGAATCAAAAGAGAGAATT 2534
Score = 617 bits (334), Expect = 1e-175
Identities = 479/546 (88%), Gaps = 21/546 (4%)
Strand=Plus/Plus
Query 1 AAGGGTTTTTGAGGAAAGCTTCTCGACAATGGCCATTGCTCGTTTACTTTCACCCAAATT 60
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AAGGGTTTTTGAGGAAAGTTTCTCGAAAATGGCCATTGCTCGTTTACTTTCACCCAAATC 60
Query 61 AACTCCTCATTTCAACAATAGAGGTTTTGTACCTTTGACGCGGAGGTGGTTATCTTCTTC 120
||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 61 AACTCCTCAATTCAACAATAGAGGTTTTGTAATTTTGACGAGGAGGTGGTTATCTTCTTC 120
Query 121 TATTGAGGATGGTCGGAAATATGAGAGATTGCCAGATTCTGAAGCTTCCACGAACAAAGA 180
| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 121 TCTTGAGGATGGTCGGAAATGTGAGAGATTGTCAGATTCTGAAGCTTCCACGAACAAAGA 180
Query 181 TATTGGCCAAAAGGGAGTGCGTTGGTATTCTTTGGGAGGTTTACTGACTAATCTTAAGCA 240
|||||| ||||||| ||||| |||||||||||||||||||||| | | |||||| |||||
Sbjct 181 TATTGGACAAAAGGTAGTGCATTGGTATTCTTTGGGAGGTTTAATTAGTAATCTAAAGCA 240
Query 241 AAAGATTATGGGAAACGTGATTTTGATGGACAAAAGTTCTGGTGAAGACTCGGTTTCGCC 300
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 AAAGATTATGGGAAACGTAATTTTGATGGACAAAAGTTCTGGTGAAGACTCGGTTTTGCC 300
Query 301 AAAATCACCCGTAGTATCTTCATCAGATGTGACTGCTACTAAAGTTGTCACCTTGCAGAA 360
|||||| || | || || |||||||||||| ||| ||| ||||| || |||||| ||||
Sbjct 301 AAAATCGCCAATGGTTTCCTCATCAGATGTGGCTGTTACGAAAGTGGTGACCTTGAAGAA 360
Query 361 TGTGGCAGAAAGCGAAAAATGTGTCTC-TTCTAGTATAAAAGAAGAATCTCCAGTCTCTG 419
|| |||||||||||||| ||| || | ||| ||| ||||||||||| | | | |
Sbjct 361 CGTTGCAGAAAGCGAAAACTGTATC-CATTCGAGTGTAAAAGAAGAA-----A-T-T--G 410
Query 420 AAATGGGATCTGAAGATGCATCTCAAAGTGTTGCTGCAGAAAACAAGAAT-TGTATCACT 478
| |||||||||||||||||||||||||||||| || || |||| | |||||||||
Sbjct 411 ----G--ATCTGAAGATGCATCTCAAAGTGTTGCTGCGGATAATAAGA-TCTGTATCACT 463
Query 479 TCGAG-AGTAAAAGAAGAATCGCCAGTCTCTGAAATGGGATCTCAAGATGTATCTCAAAG 537
||||| | ||||||||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct 464 TCGAGTA-TAAAAGAAGAATCTTTTGTCTCGGAAATGGGATCTCAAGATGCATCTCAAAG 522
Query 538 TGTTGC 543
||||||
Sbjct 523 TGTTGC 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121805337604
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5