BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479854

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23390.1 | Symbols:  | Zinc-binding ribosomal protein family...   833    0.0  


> AT3G23390.1 | Symbols:  | Zinc-binding ribosomal protein family 
protein | chr3:8375372-8376392 FORWARD LENGTH=541
Length=541

 Score =  833 bits (451),  Expect = 0.0
 Identities = 504/530 (95%), Gaps = 1/530 (0%)
 Strand=Plus/Plus

Query  1    CGTCTAGTGGAACGACGACGGCACAGAAGCTTCACCGGAAATCAGAGACGCGAAAATGGT  60
            ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct  1    CGTCTAGTGGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGGT  60

Query  61   GAACATTCCAAAGACAAAGAACACTTACTGCAAGAACAAGGAATGCAAGAAGCATACTTT  120
            |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct  61   GAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTT  120

Query  121  GCACAAGGTTACCCAGTACAAGAAGGGTAAAGACAGTCTTGCTGCTCAAGGAAAGCGTCG  180
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTCTTGCTGCTCAAGGAAAGCGTCG  180

Query  181  TTATGACCGTAAACAATCTGGTTATGGTGGTCAGACTAAGCCTGTCTTTCACAAGAAGGC  240
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct  181  TTATGACCGTAAACAATCTGGTTATGGTGGTCAGACTAAGCCTGTCTTCCACAAAAAGGC  240

Query  241  TAAGACCACGAAGAAGATTGTGCTGAGGCTTCAGTGCCAAAGCTGCAAGCATTTTTCGCA  300
            |||||||||||||||||||||  ||||||||||||| |||||||||||||| ||||||||
Sbjct  241  TAAGACCACGAAGAAGATTGTTTTGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCA  300

Query  301  GCGTCCGATCAAGAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGGAAGGGAAC  360
            |||||| |||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct  301  GCGTCCTATCAAGAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAAC  360

Query  361  ATCTCTATTCTAAGCTGGTTTCATCTTATTTTCTGCAATTTTTGTACTTTGCTGGATTTG  420
            |||||| || |||| ||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct  361  ATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTAC-TTGCTGGATTTG  419

Query  421  GAATCCAGGTGTTTTAGCTCTCTCGTATAAGATTGTCTCATCTTTGCTTGTTAACTCTAT  480
            |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  420  GAATCCATTTGTTTTAGCTCTCTCGTATAAGATTGTCTCATCTTTGCTTGTTAACTCTAT  479

Query  481  ATTTTGAATCATCAAGATATGGTTTTGCTGTTAATCCTAGACCGTCGATA  530
            |||||||||||||||||||||||||||||||||||| | |||| ||||||
Sbjct  480  ATTTTGAATCATCAAGATATGGTTTTGCTGTTAATCATTGACCTTCGATA  529



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25368244235


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5