BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479857

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23440.1 | Symbols: EDA6, MEE37 | embryo sac development arr...   283    5e-76


> AT3G23440.1 | Symbols: EDA6, MEE37 | embryo sac development arrest 
6 | chr3:8404358-8404684 REVERSE LENGTH=327
Length=327

 Score =  283 bits (153),  Expect = 5e-76
 Identities = 255/299 (85%), Gaps = 27/299 (9%)
 Strand=Plus/Plus

Query  1    GGCGCGTCAAGAAAACGTAAGGAGACGGAGAGTGATC-CA-AG-AGCCACCACACCGAAC  57
            |||||||| ||||||||||| || |||||||||||||  | || |||| |||||||||||
Sbjct  28   GGCGCGTCGAGAAAACGTAAAGACACGGAGAGTGATCTAAGAGAAGCCGCCACACCGAAC  87

Query  58   TGGCTACTGGCTGGCTACATGGCACACGAGTATCTCACGTGCGGTACTATGTTGGGCCGG  117
            ||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  88   TGGTTATTGGCTGGCTACATGGCACACGAGTACCTCACGTGCGGTACTATGTTGGGCCGG  147

Query  118  AAGTTGTATCCTGGATGGGCCGAAGTTGGGCCGC-A--C-----AT-AG-A--A--G--C  161
            ||| ||||| | |||||||||||||||||||||| |  |     || |  |  |  |  |
Sbjct  148  AAGCTGTATTCAGGATGGGCCGAAGTTGGGCCGCTAGTCTCGCCATCACCATTACAGAGC  207

Query  162  -GA-AA---AA---GGCTCATCAGAGTTACTCTGAAGTGGCGAGTGTGTTCAAAATAGAT  213
             || ||   ||   |||||  |||||||||||||||||||||||||||||||||| ||||
Sbjct  208  AGAGAAGTGAAAAAGGCTCGCCAGAGTTACTCTGAAGTGGCGAGTGTGTTCAAAACAGAT  267

Query  214  GGGAACTATGTCCCTGGTGTGGTTAACCCGACCCAGCTTGCTAAATGGATCCAGATGTG  272
            || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  268  GGAAACCATGTCCCTGGTGTGGTTAACCCGACCCAGCTTGCTAAATGGATCCAGATGTG  326



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12466401752


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5