BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479859
Length=844
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23490.1 | Symbols: CYN | cyanase | chr3:8423011-8424652 REV... 1168 0.0
> AT3G23490.1 | Symbols: CYN | cyanase | chr3:8423011-8424652 REVERSE
LENGTH=971
Length=971
Score = 1168 bits (632), Expect = 0.0
Identities = 741/792 (94%), Gaps = 14/792 (2%)
Strand=Plus/Plus
Query 56 TTTCCATAAAAAGAGTGAGGAAGAGACAAAAGTGATTGATTGGTCGa-aaaaaaTGGAAG 114
||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 186 TTTCCATTAAAAGAGTGAGGAAGAGACAAAAGTGATTGATTGGTC-AGAAAAAATGGAAG 244
Query 115 CGGCGAAGAAACAGAGTGTTACAAATCAGCTTCTCGCCGTGAAAACAGCTTCCGGCAAGA 174
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 245 CGGCGAAGAAACAGAGTGTTACAAATCAGCTTCTCGCCGTGAAATCAGCTTCCGGCAAGA 304
Query 175 CTTTTAGCCAATTAGCGGCGGAGACTGGTCTCACCAACGTCTACGTAGCTCAGCTTCTCC 234
|||||||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 305 CTTTTAGCCAGTTAGCCGCGGAGACAGGTCTAACCAACGTATACGTAGCTCAGCTTCTCC 364
Query 235 GTCGCCAAGCTCAGCTCAAACCGGACACAGTCCCGAAGCTTAAGGAAGCTTTACCAGCTC 294
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 365 GTCGTCAAGCTCAGCTCAAACCGGACACAGTCCCAAAGCTTAAGGAAGCTTTACCAGCTC 424
Query 295 TGACCGATGAACTAATCGGAGATATGATGTCTCCGCCGTGGAGATCTTATGATCCTAATC 354
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 425 TGACCGATGAACTAATCGGAGATATGATGTCTCCTCCGTGGAGATCCTATGATCCTAATC 484
Query 355 TCATTCAAGAACCCACTATCTACAGGTTGAATGAAGCAGTGATGCATTTTGGTGAGAGTA 414
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TCATCCAAGAACCCACTATCTACAGGTTGAATGAAGCAGTGATGCATTTTGGTGAGAGTA 544
Query 415 TAAAGGAGATTATCAATGAAGATTTTGGCGACGGCATCATGTCGGCAATAGACTTCTATT 474
|||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||
Sbjct 545 TAAAGGAGATTATCAATGAAGATTTTGGAGATGGCATCATGTCGGCGATAGATTTCTATT 604
Query 475 GCTCTGTGGACAAAATCAAAGGAGTGGATGGTAACAATCGTGTGGTCGTGACGCTTGATG 534
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 605 GCTCTGTCGACAAAATCAAAGGAGTGGATGGTAACAATCGCGTGGTTGTGACGCTTGATG 664
Query 535 GGAAGTATCTTTCGCATTCCGAACAGAGGACGGAGAATATGGTCTCAAGGCTAAACCTCA 594
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 665 GAAAGTATCTTTCGCATTCCGAACAGAGGACGGAGAATATGGTCTCAAGGCTAAATCTCA 724
Query 595 AGGGAAGTACAAGTGAATGATATGAATGTAAAGAAGCCTTTTCGTAACCATGAAAGCCTC 654
||||| ||||||| |||||||| | | |||| ||||| |||| ||||||| ||||
Sbjct 725 AGGGAGGTACAAGCGAATGATA--A--G-AAAG---CCTTTACGTATCCATGAAGGCCTT 776
Query 655 ATTGTAAGTTGTAACGTTGTAATGCCTATGGTGTTTGTTTATCTGTAATCTATGCAACTT 714
||||||||| ||||||||||||| |||||| |||||||||||||||||| ||||||||||
Sbjct 777 ATTGTAAGTGGTAACGTTGTAATACCTATG-TGTTTGTTTATCTGTAATATATGCAACTT 835
Query 715 CAGCAT-TCCGATTAAA-GCTGTTTCAGGTTGAATAACAGTGAATAAATAAAACTTATAA 772
|||||| | ||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 836 CAGCATCTA-GATTAAAAGCTGTTTCAGGTTGAATAACAGTGAATAAACAAAACTTATAA 894
Query 773 AACCTTTGTATGTTTGTATTTAACATCGTAATCGAGTTCTGATTCATGCTTAATATCGTT 832
||||||| ||||||| | ||||||||||||||||||||| |||||||||||||||||| |
Sbjct 895 AACCTTTCTATGTTTATCTTTAACATCGTAATCGAGTTCCGATTCATGCTTAATATCGAT 954
Query 833 TGAATAAAGTTT 844
||||||||||||
Sbjct 955 TGAATAAAGTTT 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41141766393
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5