BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479864
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23550.1 | Symbols: | MATE efflux family protein | chr3:844... 2237 0.0
AT3G23560.1 | Symbols: ALF5 | MATE efflux family protein | chr3... 1729 0.0
> AT3G23550.1 | Symbols: | MATE efflux family protein | chr3:8448273-8450697
REVERSE LENGTH=1620
Length=1620
Score = 2237 bits (1211), Expect = 0.0
Identities = 1379/1462 (94%), Gaps = 3/1462 (0%)
Strand=Plus/Plus
Query 1 GTCTAGCTTCTCCTACTCTTAACCAAAATCCAAAGTCCTTGAAGATACAATGGCTGCTCC 60
|||||||||||||||||||| || | ||||||| ||||||||||||||||||||| |||
Sbjct 1 GTCTAGCTTCTCCTACTCTTCGCC-AGATCCAAATTCCTTGAAGATACAATGGCTGATCC 59
Query 61 TACGTCCAAAGATGACCATGAAGGTGAAGGAGGAAGAGAAAAATCATCAACTTATGTTCA 120
|||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||
Sbjct 60 CACGTCCAAAGATGACCATGATGGTGAAGGAGGAAGAGACAAATCATCAACTTTTGTTCA 119
Query 121 ACAACTTATTGACGTTGAAGAAGCAAAGACTCAAATCATTTACTCTCTACCAATGATATT 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AAAACTTATTGACGTTGAAGAAGCAAAGACTCAAATCATTTACTCTCTACCAATGATATT 179
Query 181 CACCAATCTTTTCTATTATTGTATCCCTTTAACCTCTGTGATGTTTGCTTCTCACCTCGG 240
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 180 CACCAATCTTTTCTATTATTGTATCCCTTTAACCTCTGTGATGTTCGCTTCTCAACTCGG 239
Query 241 CCAACTCGAGCTCGCCGGTGCTACCCTCGCCAATTCTTGGGCTACCGTCACCGGTTTTGC 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 CCAACTCGAGCTCGCCGGTGCTACCCTAGCCAATTCTTGGGCTACCGTCACCGGTTTTGC 299
Query 301 CTTCATGACAGGGTTAAGTGGAGCACTTGAGACATTATGTGGACAAGGCTTTGGTGCAAA 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 CTTCATGACAGGGTTAAGTGGAGCACTTGAGACATTGTGTGGACAAGGCTTTGGTGCAAA 359
Query 361 AAGCTATAGGATGTTGGGGATTCATCTTCAATCATCTTGCATCGTCTCATTAGTCTTCAG 420
||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 360 AAGCTATAGAATGTTGGGGATTCATCTACAATCATCTTGCATTGTTTCATTAGTCTTCAC 419
Query 421 CATCCTCACCACCATCTTATGGTTCTTCACAGAATCGATTTTCGGACTTCTCAGACAAGA 480
||| |||| ||||||||||||||||||||| |||||| ||||| |||||| ||||||||
Sbjct 420 CATTCTCATCACCATCTTATGGTTCTTCACGGAATCGGTTTTCTTACTTCTTAGACAAGA 479
Query 481 TCCTAGCATCTCAAAACAAGCTGCACTCTATATGAAGTACCTAGCTCCCGGTTTATTTGC 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 480 TCCTAGCATCTCAAAACAAGCTGCACTCTACATGAAGTACCTAGCTCCCGGTTTACTCGC 539
Query 541 TTATGGGTTCTTACAAAACATTTTGAGATTTTGCCAAACACAAT-CGATCATTACTCCAC 599
||| |||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
Sbjct 540 TTACGGGTTCTTACAAAACATTTTGAGATTTTGCCAAACACAATGC-ATCGTTACTCCGC 598
Query 600 TAGTCATCTTCTCGTTTGTTCCCTTGGTGATAAATATCGGTACTACGTATGCTCTGGTGC 659
|||| | ||||||||| ||||||||||||| |||||||||||||| |||||||||||||
Sbjct 599 TAGTTTTATTCTCGTTTCTTCCCTTGGTGATTAATATCGGTACTACATATGCTCTGGTGC 658
Query 660 ATTTAGCTGGCCTCGGATTCATTGGAGCTCCCATAGCTACATCTATTTCAATGTGGATAG 719
|||||||||| || |||||||| || ||||| |||||||||||||||||| |||||||||
Sbjct 659 ATTTAGCTGGGCTTGGATTCATCGGTGCTCCAATAGCTACATCTATTTCATTGTGGATAG 718
Query 720 CTTTCGTTTCTCTCGGAATTTACGTGATTTGGTCAGACAAGTTTAAGGAAACATGGACCG 779
|||||||||||||||| |||| |||||||| || |||||||||||||||||||||||||
Sbjct 719 CTTTCGTTTCTCTCGGGTTTTATGTGATTTGTTCGGACAAGTTTAAGGAAACATGGACCG 778
Query 780 GATTTTCGATGGAATCATTTCGTTATGTAGTACTAAACTTGACATTAAGCATCCCTTCTG 839
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 779 GATTTTCGATGGAATCATTTCATCATGTAGTACTAAACTTGACATTAAGCATCCCTTCTG 838
Query 840 CTGCTATGGTATGTTTGGAATATTGGGCGTTCGAGATTCTAGTATTCTTGGCAGGACTCA 899
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |
Sbjct 839 CTGCTATGGTATGTTTGGAATATTGGGCGTTCGAGATTCTAGTGTTCTTAGCAGGATTGA 898
Query 900 TGCCAAATCCGGAAATCACCACCTCTTTGGTAGCTATATGCGTCAACACCGAATCGATTA 959
||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| || |
Sbjct 899 TGCGAAATCCGGAAATCACCACTTCTTTGGTAGCTATATGCGTCAACACGGAATCAATAA 958
Query 960 GCTACATGTTAACATGCGGACTTAGCGCAGCTACAAGTACTCGTGTGTCGAACGAACTTG 1019
| ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 959 GTTACATGTTAACATGCGGACTTAGTGCAGCTACAAGTACGCGTGTGTCCAACGAACTTG 1018
Query 1020 GAGCAGGAAATGTAAAAGGCGCAAAGAAGGCGACTTCGGTGTCCGTTAAGTTGTCTTTAG 1079
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1019 GAGCAGGAAATGTAAAAGGCGCAAAGAAGGCGACTTCGGTCTCCGTTAAGTTGTCTTTAG 1078
Query 1080 TTCTAGCTCTCGGTGTAGTGATTGCTATACTTGTAGGTCATGATGCTTGGGTTGGTTTAT 1139
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1079 TTCTAGCTCTCGGTGTAGTCATTGCTATACTTGTAGGTCATGATGCCTGGGTTGGTTTAT 1138
Query 1140 TCAGCAATAGCCATGTGATTAAAGAGGGATTTGCATCACTAAGGTTTTTCCTTGCTGCAT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TCAGCAATAGCCATGTGATTAAAGAGGGATTTGCATCACTAAGGTTTTTCCTTGCTGCAT 1198
Query 1200 CTATAACACTTGATTCCATCCAAGGTGTTTTATCAGGAGTTGCGAGAGGATGTGGATGGC 1259
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1199 CTATAACACTTGATTCAATCCAAGGTGTTTTATCAGGAGTTGCGAGAGGATGCGGATGGC 1258
Query 1260 AGCGGTTAGCCACGGTTATAAATTTGGGAACATTCTATTTAATTGGAATGCCGATTTCAG 1319
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 1259 AGCGGTTAGCCACGGTTATAAATTTGGGAACATTCTACTTAATCGGAATGCCTATTTCAG 1318
Query 1320 TCCTTTGTGGTTTCAAGTTGAAGCTTCATGCCAAGGGTTTGTGGATCGGTCTGATATGTG 1379
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1319 TCCTTTGTGGTTTCAAGTTGAAGCTTCATGCCAAGGGTTTATGGATCGGTCTGATATGTG 1378
Query 1380 GGATGTTTTGCCAATCCTCGTCTCTTCTGCTTATGACAATTTTCCGGAAGTGGATAAAGC 1439
||||||||||||| ||| | |||||| ||||||||||||||||||||||||||| |||||
Sbjct 1379 GGATGTTTTGCCAGTCCGCATCTCTTTTGCTTATGACAATTTTCCGGAAGTGGACAAAGC 1438
Query 1440 TGAATGCTGCTACTGTCTGAAA 1461
||| |||||| |||||||||||
Sbjct 1439 TGACTGCTGCCACTGTCTGAAA 1460
> AT3G23560.1 | Symbols: ALF5 | MATE efflux family protein | chr3:8454116-8456681
REVERSE LENGTH=1772
Length=1772
Score = 1729 bits (936), Expect = 0.0
Identities = 1242/1391 (89%), Gaps = 15/1391 (1%)
Strand=Plus/Plus
Query 80 GAAGGTGAAGGAGGAA-GAGA--AAAATCATCAACTTAT-GTTCAACAACTTATTGACGT 135
|||| |||| |||||| |||| || ||||||||||| | |||||| || | || |||||
Sbjct 145 GAAGATGAAAGAGGAAGGAGATCAAGATCATCAACTT-TGGTTCAAAAAGTGATCGACGT 203
Query 136 TGAAGAAGC-AAAGACTCAAATCATTTACTCTCTACCAATGATATTCACCAATCTTTTCT 194
|||||||| |||| ||||||| ||||||||| | ||||||||| |||||||| ||||||
Sbjct 204 GGAAGAAGCAAAAG-CTCAAATGATTTACTCTTTGCCAATGATACTCACCAATGTTTTCT 262
Query 195 ATTATTGTATCCCTTTAACCTCTGTGATGTTTGCTTCTCACCTCGGCCAACTCGAGCTCG 254
| || ||||| ||| |||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 263 ACTACTGTATTCCTATAACTTCTGTGATGTTTGCTTCTCACCTCGGTCAACTCGAGCTCG 322
Query 255 CCGGTGCTACCCTCGCCAATTCTTGGGCTACCGTCACCGGTTTTGCCTTCATGACAGGGT 314
||||||| ||||| |||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct 323 CCGGTGCCACCCTTGCCAATTCTTGGGCCACCGTCTCCGGTTTTGCCTTCATGGTAGGGT 382
Query 315 TAAGTGGAGCACTTGAGACATTATGTGGACAAGGCTTTGGTGCAAAAAGCTATAGGATGT 374
|||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 383 TAAGTGGATCACTTGAGACATTATGTGGACAAGGCTTTGGTGCAAAAAGATACAGGATGT 442
Query 375 TGGGGA-TTCATCTTCAATCATCTTGCATCGTCTCATTAGTCTTCAGCATCCTCACCACC 433
| |||| ||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 443 T-GGGAGTTCATCTACAATCATCTTGCATCGTTTCATTAGTTTTCAGCATCCTCATCACC 501
Query 434 ATCTTATGGTTCTTCACAGAATCGATTTTCGGACTTCTCAGACAAGATCCTAGCATCTCA 493
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 502 ATCTTCTGGTTCTTCACAGAATCGATTTTTGGACTTCTCAGACAAGATCCTAGCATTTCA 561
Query 494 AAACAAGCTGCACTCTATATGAAGTACCTAGCTCCCGGTTTATTTGCTTATGGGTTCTTA 553
|||||||||||||||||||||||||||| ||||||||||||| | ||||| ||||| |||
Sbjct 562 AAACAAGCTGCACTCTATATGAAGTACCAAGCTCCCGGTTTACTAGCTTACGGGTTTTTA 621
Query 554 CAAAACATTTTGAGATTTTGCCAAACACAATCGATCATTACTCCACTAGTCATCTTCTCG 613
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 622 CAAAATATTTTGAGATTTTGCCAAACACAATCGATCATTGCTCCACTAGTCATCTTCTCG 681
Query 614 TTTGTTCCCTTGGTGATAAATATCGGTACTACGTATGCTCTGGTGCATTTAGCTGGCCTC 673
|||||||||||||||||||| || | ||| | |||| ||| || || ||||||| ||
Sbjct 682 TTTGTTCCCTTGGTGATAAACATTGCTACCGCATATGTTCTTGTTTATGTAGCTGGGCTT 741
Query 674 GGATTCATTGGAGCTCCCATAGCTACATCTATTTCAATGTGGATAGCTTTCGTTTCTCTC 733
||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||| ||
Sbjct 742 GGATTCATTGGTGCTCCAATAGCTACATCTATTTCATTGTGGATAGCTTTCCTTTCGCTT 801
Query 734 GGAATTTACGTGATTTGGTCAGACAAGTTTAAGGAAACATGGACCGGATTTTCGATGGAA 793
|||| ||| ||||| || ||||| |||||||||||||||||||| ||||||||| |||||
Sbjct 802 GGAACTTATGTGATGTGTTCAGAAAAGTTTAAGGAAACATGGACTGGATTTTCGTTGGAA 861
Query 794 TCATTTCGTTATGTAGTACTAAACTTGACATTAAGCATCCCTTCTGCTGCTATGGTATGT 853
||||| |||||| | ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 862 TCATTCCGTTATATCGTAATAAACTTGACATTAAGCCTCCCTTCTGCTGCTATGGTATGT 921
Query 854 TTGGAATATTGGGCGTTCGAGATTCTAGTATTCTTGGCAGGACTCATGCCAAATCCGGAA 913
|||||||||||||| ||||||||||| || |||||||||||| | |||||||| ||||||
Sbjct 922 TTGGAATATTGGGCATTCGAGATTCTTGTGTTCTTGGCAGGAGTGATGCCAAACCCGGAA 981
Query 914 ATCACCACCTCTTTGGTAGCTATATGCGTCAACACCGAATCGATTAGCTACATGTTAACA 973
|||| || |||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 982 ATCAATACTTCTTTGGTCGCTATATGCGTCAACACGGAGGCGATTAGCTACATGTTAACA 1041
Query 974 TGCGGACTTAGCGCAGCTACAAGTACTCGTGTGTCGAACGAACTTGGAGCAGGAAATGTA 1033
| ||||||||| |||||| ||||||| |||||||| || |||||||||||||||||||||
Sbjct 1042 TACGGACTTAGTGCAGCTGCAAGTACGCGTGTGTCCAATGAACTTGGAGCAGGAAATGTA 1101
Query 1034 AAAGGCGCAAAGAAGGCGACTTCGGTGTCCGTTAAGTTGTCTTTAGTTCTAGCTCTCGGT 1093
|||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||
Sbjct 1102 AAAGGCGCAAAGAAGGCGACCTCTGTGTCCGTAAAGTTGTCTTTAGTTCTTGCTCTCGGC 1161
Query 1094 GTAGTGATTGCTATACTTGTAGGTCATGATGCTTGGGTTGGTTTATTCAGCAATAGCCAT 1153
|| || |||| | |||| ||||||||||||| ||||||||| ||||| ||| ||||| ||
Sbjct 1162 GTTGTAATTGTTTTACTCGTAGGTCATGATGGTTGGGTTGGGTTATTTAGCGATAGCTAT 1221
Query 1154 GTGATTAAAGAGG-GATTTGCATCACTAAGGTTTTTCCTTGCTGCATCTATAACACTTGA 1212
||||||||||||| | ||||||||| | |||||||| |||||||| |||||||| |||||
Sbjct 1222 GTGATTAAAGAGGAG-TTTGCATCATTGAGGTTTTTTCTTGCTGCCTCTATAACTCTTGA 1280
Query 1213 TTCCATCCAAGGTGTTTTATCAGGAGTTGCGAGAGGATGTGGATGGCAGCGGTTAGCCAC 1272
||| |||||||| ||||||||||||||||| |||||||| ||||||||||| |||| |||
Sbjct 1281 TTCAATCCAAGGAGTTTTATCAGGAGTTGCAAGAGGATGCGGATGGCAGCGTTTAGTCAC 1340
Query 1273 GGTTATAAATTTGG-GAACATTCTATTTAATTGGAATGCCGATTTCAGTCCTTT-GTGGT 1330
|||||||||||||| || ||||||| |||||||||||||||||| | | ||||| |||||
Sbjct 1341 GGTTATAAATTTGGCGA-CATTCTACTTAATTGGAATGCCGATTGCCG-CCTTTTGTGGT 1398
Query 1331 TTCAAGTTGAAGCTTCATGCCAAGGGTTTGTGGATCGGTCTGATATGTGGGATGTTTTGC 1390
|||||||||||| || ||||||||||||||||||| ||| |||||||||| || ||||||
Sbjct 1399 TTCAAGTTGAAGTTTTATGCCAAGGGTTTGTGGATTGGTTTGATATGTGGAATATTTTGC 1458
Query 1391 CAATCCTCGTCTCTTCTGCTTATGACAATTTTCCGGAAGTGGATAAAGCTGAATGCTGCT 1450
||||| || |||||| ||||||||||||| ||||||||||||| ||||||||||| ||||
Sbjct 1459 CAATCATCATCTCTTTTGCTTATGACAATATTCCGGAAGTGGACAAAGCTGAATGTTGCT 1518
Query 1451 ACTGTCTGAAA 1461
|| ||||||||
Sbjct 1519 ACGGTCTGAAA 1529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5