BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479865
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23560.1 | Symbols: ALF5 | MATE efflux family protein | chr3... 2567 0.0
AT3G23550.1 | Symbols: | MATE efflux family protein | chr3:844... 1696 0.0
> AT3G23560.1 | Symbols: ALF5 | MATE efflux family protein | chr3:8454116-8456681
REVERSE LENGTH=1772
Length=1772
Score = 2567 bits (1390), Expect = 0.0
Identities = 1557/1636 (95%), Gaps = 18/1636 (1%)
Strand=Plus/Plus
Query 1 CGTACATCTCTTATTTAATTCCTCACCTTGCCAAATCACAATTCCCCTCTTCAAGTCTTA 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 CGTACATCTCTTATTTAATTCCTCACCTTGCCAAATCACAATTCTCCTCTTCAAGTCTTA 60
Query 61 ACCAAACCCAAAGTCCTTCCAACAAGAAGATCCAATGGCTGATCCGGCGACGAGTTCTCC 120
|||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||
Sbjct 61 ACCAAACCCAAAGTCCTT-CAACAAGAAAATCCAATGGCTGATCCGGCAACGAGTTCTCC 119
Query 121 GTTGTTGGTTAACCATGAAGGTGGAGAAGATGAAAGAGGAAGGAG---AGGATCATCAAC 177
|||||||| | |||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 120 GTTGTTGGATGACCATGTAGGTGGAGAAGATGAAAGAGGAAGGAGATCAAGATCATCAAC 179
Query 178 TTTGGTTC-AAAAGCTAATCGACGTGGAAGAAGCTAAAGCTCAAATGATTTACTCTTTGC 236
|||||||| ||||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 180 TTTGGTTCAAAAAG-TGATCGACGTGGAAGAAGCAAAAGCTCAAATGATTTACTCTTTGC 238
Query 237 CAATGATACTCACCAATGTTTTCTACTACTGTATCCCTATAACTTCTGTGATGTTTGCTT 296
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 239 CAATGATACTCACCAATGTTTTCTACTACTGTATTCCTATAACTTCTGTGATGTTTGCTT 298
Query 297 CTCACCTCGGTCAACTCGAGCTCGCCGCTGCCACTCTTGCCAATTCTTGGGCCACCGTCT 356
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 299 CTCACCTCGGTCAACTCGAGCTCGCCGGTGCCACCCTTGCCAATTCTTGGGCCACCGTCT 358
Query 357 CCGGTTTTGCCTTCATGGTAGGGTTAAGTGGATCACTTGAGACATTATGTGGACAAGGCT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CCGGTTTTGCCTTCATGGTAGGGTTAAGTGGATCACTTGAGACATTATGTGGACAAGGCT 418
Query 417 TTGGTGCAAAAA-ACTATAGGATGTTGGGGGTTCATCTACAATCATCTTGCATAGTCTCA 475
|||||||||||| | || ||||||||||| ||||||||||||||||||||||| || |||
Sbjct 419 TTGGTGCAAAAAGA-TACAGGATGTTGGGAGTTCATCTACAATCATCTTGCATCGTTTCA 477
Query 476 TTAGTCTTCAGCATCCTCATCACCATCTTCTGGTTCTTCACAGAATCGATTTTCGGACTT 535
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 478 TTAGTTTTCAGCATCCTCATCACCATCTTCTGGTTCTTCACAGAATCGATTTTTGGACTT 537
Query 536 CTCAGACAAGATCCTAGCATTTCAAAACAAGCTGCACTCTATATGAAGTACCAAGCTCCC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CTCAGACAAGATCCTAGCATTTCAAAACAAGCTGCACTCTATATGAAGTACCAAGCTCCC 597
Query 596 GGTTTACTCGCTTACGGGTTCTTACAGAATATCTTGAGATTTTGCCAAACACAATCGATC 655
|||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 598 GGTTTACTAGCTTACGGGTTTTTACAAAATATTTTGAGATTTTGCCAAACACAATCGATC 657
Query 656 ATTACTCCACTAGT-ATTCTTCTCGTTTGTTCCCTTGGTGATAAATATCGGTACCGCATA 714
||| |||||||||| | |||||||||||||||||||||||||||| || | |||||||||
Sbjct 658 ATTGCTCCACTAGTCA-TCTTCTCGTTTGTTCCCTTGGTGATAAACATTGCTACCGCATA 716
Query 715 TGTTCTTGTTTATTTATCTGGCCTCGGATTCATTGGTGCTCCAATAGCTACATCTATTTC 774
||||||||||||| || |||| || |||||||||||||||||||||||||||||||||||
Sbjct 717 TGTTCTTGTTTATGTAGCTGGGCTTGGATTCATTGGTGCTCCAATAGCTACATCTATTTC 776
Query 775 ATTGTGGATAGCTTTCCTTTCTCTCGGGACTTATGTGATCTGTTCAGAAAAGTTTAAAGA 834
||||||||||||||||||||| || || ||||||||||| ||||||||||||||||| ||
Sbjct 777 ATTGTGGATAGCTTTCCTTTCGCTTGGAACTTATGTGATGTGTTCAGAAAAGTTTAAGGA 836
Query 835 AACATGGACTGGATTTTCGTTGGAATCATTCCGTTATATCGTAATAAACTTGACATTAAG 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AACATGGACTGGATTTTCGTTGGAATCATTCCGTTATATCGTAATAAACTTGACATTAAG 896
Query 895 CATCCCTTCTGCTGCTATGGTATGTTTGGAATATTGGGCATTCGAGATTCTTGTGTTCTT 954
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CCTCCCTTCTGCTGCTATGGTATGTTTGGAATATTGGGCATTCGAGATTCTTGTGTTCTT 956
Query 955 GGCAGGAGTGATGCCAAACCCGGAAATCAATACTTCTTTGGTTGCTATATGCGTCAACAC 1014
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 957 GGCAGGAGTGATGCCAAACCCGGAAATCAATACTTCTTTGGTCGCTATATGCGTCAACAC 1016
Query 1015 GGAGGCGATTAGCTACATGTTAACATACGGACTTAGCGCAGCTGCAAGTACGCGTGTGTC 1074
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1017 GGAGGCGATTAGCTACATGTTAACATACGGACTTAGTGCAGCTGCAAGTACGCGTGTGTC 1076
Query 1075 GAACGAACTTGGAGCTGGAAATGTAACAGGCGCAAAGAAGGCGACCTCAGTGTCCGTAAA 1134
|| ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1077 CAATGAACTTGGAGCAGGAAATGTAAAAGGCGCAAAGAAGGCGACCTCTGTGTCCGTAAA 1136
Query 1135 GTTGTCTTTAGTTCTTGCTCTCGGCGTTGTAATTGTTTTACTTGTAGGTCATGATGGTTG 1194
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1137 GTTGTCTTTAGTTCTTGCTCTCGGCGTTGTAATTGTTTTACTCGTAGGTCATGATGGTTG 1196
Query 1195 GGTTGGGTTATTTAGTGATAG-TCATGTGATTAAAGAGGAGTTTGCATCATTGAGGTTTT 1253
||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1197 GGTTGGGTTATTTAGCGATAGCT-ATGTGATTAAAGAGGAGTTTGCATCATTGAGGTTTT 1255
Query 1254 TTCTTGCTGCATCTATAACTCTTGATTCAATCCAAGGAGTTTTATCAGGAGTTGCTAGAG 1313
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1256 TTCTTGCTGCCTCTATAACTCTTGATTCAATCCAAGGAGTTTTATCAGGAGTTGCAAGAG 1315
Query 1314 GATGCGGATGGCAGCGTTTAGTCACGGTTATAAATTTGGCAACATTCTACTTAATAGGAA 1373
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1316 GATGCGGATGGCAGCGTTTAGTCACGGTTATAAATTTGGCGACATTCTACTTAATTGGAA 1375
Query 1374 TGCCGATCGCAGCCTTTTGTGGTTTCAAGTTGAAGTTTTATGCCAAGGGTTTATGGATTG 1433
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1376 TGCCGATTGCCGCCTTTTGTGGTTTCAAGTTGAAGTTTTATGCCAAGGGTTTGTGGATTG 1435
Query 1434 GTCTCATTTGTGGGATATTTTGCCAATCTTCATCTCTTTTGCTTATGACAATCTTCCGGA 1493
|| | || ||||| |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1436 GTTTGATATGTGGAATATTTTGCCAATCATCATCTCTTTTGCTTATGACAATATTCCGGA 1495
Query 1494 AGTGGACAAAGCTTAATGCTGCTACGGTCTGAAAACTCTAGTTACGTTCCATTTTTCTAC 1553
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 AGTGGACAAAGCTGAATGTTGCTACGGTCTGAAAACTCTAGTTACGTTCCATTTTTCTAC 1555
Query 1554 GGAGGCACATTTATTTTCTTAAGCAAATATGGAATCAGTTACTATGATCAAGATATATAT 1613
||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||
Sbjct 1556 GGAGGCACATTTATTTTCTTAAGCAGATATGGAATCAGTTA-T-----CAAGATATATAT 1609
Query 1614 TTGGAACTCATGATCA 1629
||||||||||||||||
Sbjct 1610 TTGGAACTCATGATCA 1625
> AT3G23550.1 | Symbols: | MATE efflux family protein | chr3:8448273-8450697
REVERSE LENGTH=1620
Length=1620
Score = 1696 bits (918), Expect = 0.0
Identities = 1235/1391 (89%), Gaps = 10/1391 (1%)
Strand=Plus/Plus
Query 151 TGAAAGAGGAAGGAGA-GGATCATCAACTTTGGTTCAAAAGCTAATCGACGTGGAAGAAG 209
|||| |||||| |||| |||||||||||| |||||||| || || ||||| |||||||
Sbjct 84 TGAAGGAGGAA-GAGACAAATCATCAACTTTTGTTCAAAAACTTATTGACGTTGAAGAAG 142
Query 210 CTAAAG-CTCAAATGATTTACTCTTTGCCAATGATACTCACCAATGTTTTCTACTACTGT 268
| |||| ||||||| ||||||||| | ||||||||| |||||||| ||||||| || |||
Sbjct 143 C-AAAGACTCAAATCATTTACTCTCTACCAATGATATTCACCAATCTTTTCTATTATTGT 201
Query 269 ATCCCTATAACTTCTGTGATGTTTGCTTCTCACCTCGGTCAACTCGAGCTCGCCGCTGCC 328
|||||| |||| ||||||||||| |||||||| ||||| |||||||||||||||| |||
Sbjct 202 ATCCCTTTAACCTCTGTGATGTTCGCTTCTCAACTCGGCCAACTCGAGCTCGCCGGTGCT 261
Query 329 ACTCTTGCCAATTCTTGGGCCACCGTCTCCGGTTTTGCCTTCATGGTAGGGTTAAGTGGA 388
|| || |||||||||||||| |||||| ||||||||||||||||| |||||||||||||
Sbjct 262 ACCCTAGCCAATTCTTGGGCTACCGTCACCGGTTTTGCCTTCATGACAGGGTTAAGTGGA 321
Query 389 TCACTTGAGACATTATGTGGACAAGGCTTTGGTGCAAAAAACTATAGGATGTTGGGGGTT 448
||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||| ||
Sbjct 322 GCACTTGAGACATTGTGTGGACAAGGCTTTGGTGCAAAAAGCTATAGAATGTTGGGGATT 381
Query 449 CATCTACAATCATCTTGCATAGTCTCATTAGTCTTCAGCATCCTCATCACCATCTTCTGG 508
|||||||||||||||||||| || ||||||||||||| ||| |||||||||||||| |||
Sbjct 382 CATCTACAATCATCTTGCATTGTTTCATTAGTCTTCACCATTCTCATCACCATCTTATGG 441
Query 509 TTCTTCACAGAATCGATTTTCGGACTTCTCAGACAAGATCCTAGCATTTCAAAACAAGCT 568
|||||||| |||||| ||||| |||||| ||||||||||||||||| ||||||||||||
Sbjct 442 TTCTTCACGGAATCGGTTTTCTTACTTCTTAGACAAGATCCTAGCATCTCAAAACAAGCT 501
Query 569 GCACTCTATATGAAGTACCAAGCTCCCGGTTTACTCGCTTACGGGTTCTTACAGAATATC 628
|||||||| |||||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 502 GCACTCTACATGAAGTACCTAGCTCCCGGTTTACTCGCTTACGGGTTCTTACAAAACATT 561
Query 629 TTGAGATTTTGCCAAACACAATCG-ATCATTACTCCACTAGTATTCTTCTCGTTTGTTCC 687
|||||||||||||||||||||| | ||| ||||||| ||||| || ||||||||| ||||
Sbjct 562 TTGAGATTTTGCCAAACACAAT-GCATCGTTACTCCGCTAGTTTTATTCTCGTTTCTTCC 620
Query 688 CTTGGTGATAAATATCGGTACCGCATATGTTCTTGTTTATTTATCTGGCCTCGGATTCAT 747
||||||||| ||||||||||| |||||| ||| || ||||| |||| || ||||||||
Sbjct 621 CTTGGTGATTAATATCGGTACTACATATGCTCTGGTGCATTTAGCTGGGCTTGGATTCAT 680
Query 748 TGGTGCTCCAATAGCTACATCTATTTCATTGTGGATAGCTTTCCTTTCTCTCGGGACTTA 807
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 681 CGGTGCTCCAATAGCTACATCTATTTCATTGTGGATAGCTTTCGTTTCTCTCGGGTTTTA 740
Query 808 TGTGATCTGTTCAGAAAAGTTTAAAGAAACATGGACTGGATTTTCGTTGGAATCATTCCG 867
|||||| ||||| || |||||||| ||||||||||| ||||||||| |||||||||| |
Sbjct 741 TGTGATTTGTTCGGACAAGTTTAAGGAAACATGGACCGGATTTTCGATGGAATCATTTCA 800
Query 868 TTATATCGTAATAAACTTGACATTAAGCATCCCTTCTGCTGCTATGGTATGTTTGGAATA 927
| || | ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TCATGTAGTACTAAACTTGACATTAAGCATCCCTTCTGCTGCTATGGTATGTTTGGAATA 860
Query 928 TTGGGCATTCGAGATTCTTGTGTTCTTGGCAGGAGTGATGCCAAACCCGGAAATCAATAC 987
|||||| ||||||||||| |||||||| |||||| |||||| ||| |||||||||| ||
Sbjct 861 TTGGGCGTTCGAGATTCTAGTGTTCTTAGCAGGATTGATGCGAAATCCGGAAATCACCAC 920
Query 988 TTCTTTGGTTGCTATATGCGTCAACACGGAGGCGATTAGCTACATGTTAACATACGGACT 1047
||||||||| |||||||||||||||||||| | || || ||||||||||||| ||||||
Sbjct 921 TTCTTTGGTAGCTATATGCGTCAACACGGAATCAATAAGTTACATGTTAACATGCGGACT 980
Query 1048 TAGCGCAGCTGCAAGTACGCGTGTGTCGAACGAACTTGGAGCTGGAAATGTAACAGGCGC 1107
||| |||||| |||||||||||||||| |||||||||||||| |||||||||| ||||||
Sbjct 981 TAGTGCAGCTACAAGTACGCGTGTGTCCAACGAACTTGGAGCAGGAAATGTAAAAGGCGC 1040
Query 1108 AAAGAAGGCGACCTCAGTGTCCGTAAAGTTGTCTTTAGTTCTTGCTCTCGGCGTTGTAAT 1167
|||||||||||| || || ||||| ||||||||||||||||| |||||||| || || ||
Sbjct 1041 AAAGAAGGCGACTTCGGTCTCCGTTAAGTTGTCTTTAGTTCTAGCTCTCGGTGTAGTCAT 1100
Query 1168 TGTTTTACTTGTAGGTCATGATGGTTGGGTTGGGTTATTTAGTGATAGTCATGTGATTAA 1227
|| | |||||||||||||||||| |||||||| ||||| || |||| |||||||||||
Sbjct 1101 TGCTATACTTGTAGGTCATGATGCCTGGGTTGGTTTATTCAGCAATAGCCATGTGATTAA 1160
Query 1228 AGAGG-AGTTTGCATCATTGAGGTTTTTTCTTGCTGCATCTATAACTCTTGATTCAATCC 1286
||||| | ||||||||| | |||||||| ||||||||||||||||| |||||||||||||
Sbjct 1161 AGAGGGA-TTTGCATCACTAAGGTTTTTCCTTGCTGCATCTATAACACTTGATTCAATCC 1219
Query 1287 AAGGAGTTTTATCAGGAGTTGCTAGAGGATGCGGATGGCAGCGTTTAGTCACGGTTATAA 1346
|||| ||||||||||||||||| |||||||||||||||||||| |||| |||||||||||
Sbjct 1220 AAGGTGTTTTATCAGGAGTTGCGAGAGGATGCGGATGGCAGCGGTTAGCCACGGTTATAA 1279
Query 1347 ATTTGGCAACATTCTACTTAATAGGAATGCCGATCGCAG-CCTTTTGTGGTTTCAAGTTG 1405
|||||| ||||||||||||||| |||||||| || ||| ||||| ||||||||||||||
Sbjct 1280 ATTTGGGAACATTCTACTTAATCGGAATGCCTATTTCAGTCCTTT-GTGGTTTCAAGTTG 1338
Query 1406 AAGTTTTATGCCAAGGGTTTATGGATTGGTCTCATTTGTGGGATATTTTGCCAATCTTCA 1465
||| || ||||||||||||||||||| ||||| || |||||||| |||||||| || ||
Sbjct 1339 AAGCTTCATGCCAAGGGTTTATGGATCGGTCTGATATGTGGGATGTTTTGCCAGTCCGCA 1398
Query 1466 TCTCTTTTGCTTATGACAATCTTCCGGAAGTGGACAAAGCTTAATGCTGCTACGGTCTGA 1525
|||||||||||||||||||| |||||||||||||||||||| | |||||| || ||||||
Sbjct 1399 TCTCTTTTGCTTATGACAATTTTCCGGAAGTGGACAAAGCTGACTGCTGCCACTGTCTGA 1458
Query 1526 AAACTCTAGTT 1536
|| || |||||
Sbjct 1459 AACCTATAGTT 1469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80471473635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5