BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479866
Length=1018
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23570.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1308 0.0
> AT3G23570.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:8457778-8459691 REVERSE LENGTH=1077
Length=1077
Score = 1308 bits (708), Expect = 0.0
Identities = 838/899 (93%), Gaps = 16/899 (2%)
Strand=Plus/Plus
Query 1 TTAAAACAGAGGTCCC--AGAGAGAG-GAGGAG-CCTCACTG--TTTTGGTTCGGCCAAA 54
|||||||||||||||| || | ||| |||||| | || || ||||||||||| | ||
Sbjct 19 TTAAAACAGAGGTCCCAAAGCGCGAGAGAGGAGTCGTC-TTGTTTTTTGGTTCGG-CGAA 76
Query 55 AACAAGAATGTCGGGTCATCAGTGCACCGAGAACCCGCCTCATCTGGATCCAAATAGCGG 114
|||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 77 AACAAGAATGTCAGGTCATCAGTGCACCGAGAACCCGCCTGATCTGGATCCAACTAGCGG 136
Query 115 GTCAGGTCATGTCGAGAAACTCGGCAACCTTGACACCTACGTCTCTGGTTCCACTCATTC 174
||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 137 GTCGGGTCATGTCGAGAAACTCGGTAACCTTGACACCTACGTCTGTGGTTCCACTCATTC 196
Query 175 AAAGCTTGCTGTTCTTCTTGTCTCTCATGTTTTCGGATATGAAACTCCTAACCTGAGGAA 234
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 197 AAAGCTTGCTGTTCTTCTTGTCCCTCATGTTTTCGGATATGAAACTCCAAACCTGAGGAA 256
Query 235 ACTTGCTGACAAGGTTGCAGAAGCTGGATTCTATGCGGTGGTTCCCGATTTCTTCCATGG 294
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 257 ACTTGCTGACAAGGTTGCAGAAGCTGGATTCTACGCGGTGGTTCCTGATTTCTTCCATGG 316
Query 295 AGATCCTTATAATCCCGAGAATAAGGATCGACCGCTTCTTATATGGGCAAAAGATCATGG 354
||||||||||||||||||||| ||||||| ||| ||| ||| ||| ||||||||||
Sbjct 317 AGATCCTTATAATCCCGAGAACCAGGATCGTCCGTTTCCTATTTGGATGAAAGATCATGA 376
Query 355 ACAAGAGAAAGGGTTTGAGGACTCAAAGCCAATAGTGGAGGCCTTGAAGAACAAAGGCAT 414
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 377 ACTAGAGAAAGGGTTTGAGGAGTCAAAGCCAATAGTGGAGGCCTTGAAGAACAAAGGCAT 436
Query 415 AACTAGTATAGGAGCAGCAGGGTTCTGTTGGGGTGCAAAAGTTGCAGTGGAACTAGCTAA 474
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 437 AACTAGTATAGGAGCAGCAGGGTTCTGTTGGGGTGCAAAAGTTGCGGTGGAACTAGCTAA 496
Query 475 GCAAAAGCTTGTTGACGCTACTGTTTTGTTACATCCCT-CTCGTGTTACGGTGGATGATA 533
| |||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||
Sbjct 497 GGAAAAGCTTGTTGACGCTACTGTTTTGTTACATCC-TGCTCGCGTTACGGTGGATGATA 555
Query 534 TCAAAGG-GGTCAACATTCCAATTGCAGTATTAGGAGCTGAAATCGATCAAGTGTCCCCT 592
|||| || ||||||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 556 TCAA-GGAGGTCAACCTTCCAATTGCTGTATTAGGAGCTGAAATCGATCAAGTGTCTCCT 614
Query 593 CCAGAACTTGTGAGGCAATTCGAAGATATTTTAGCTTCTAAACCTGAGGTGAAGAGTTTT 652
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 615 CCAGAACTTGTGAGGCAGTTCGAAGATATTTTAGCTTCTAAACCTCAGGTGAAGAGTTTT 674
Query 653 GTGAAGATATTCCCAAGA-GTCAAACACGGTTGGACTGTTAGATACAATGAGAATGATCC 711
|||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct 675 GTGAAGATATTCCCAAGATG-CAAACACGGTTGGACTGTTAGATACAATGAAAATGATCC 733
Query 712 ATCAGAAGTTGAAGCTGCAGA-GGAAGCTCACAAAGACATGCTCGCTTGGCTCATCGACT 770
||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||
Sbjct 734 ATCAGAAGTTGAAGCTGCA-ATGGAAGCTCACAAGGACATGCTCGCTTGGCTCATCGACT 792
Query 771 ATGTCAAGTGAGAACTTGGAACGGTCTAAGCTTTGGTGTGCATATAACCAGAGGAGACCC 830
|| ||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||||
Sbjct 793 ATCTCAAGTGAGAACTTGAAACGGTCTAAGCTTTGGTTTGCACATAACCAGCGGAGACCC 852
Query 831 AAAATCATATCTATTACTCTTTAAATAATAAATGTAACTAGTAGTATCTTCTTTACTTT 889
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 853 AAAATCATGTCTAGTACTCTTTAAATAATAAATGTAACTAGTAGTATCTTCTTTAATTT 911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49882507971
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5