BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479867
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23580.1 | Symbols: RNR2, RNR2A | ribonucleotide reductase 2... 1892 0.0
> AT3G23580.1 | Symbols: RNR2, RNR2A | ribonucleotide reductase
2A | chr3:8460045-8462815 FORWARD LENGTH=1483
Length=1483
Score = 1892 bits (1024), Expect = 0.0
Identities = 1155/1216 (95%), Gaps = 17/1216 (1%)
Strand=Plus/Plus
Query 51 tttttttagtttcttgtcggtttccaagggtttttgtttagggttttcattttttttttC 110
|||| || ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 86 TTTTGTTGGTTCCTTGTCGGTTTCCAAGGGTTTTTGTTTAGGGTTTTCATTTTCTTTTTC 145
Query 111 C-TATCTATCTAATCCTCTG-TT-TCTCCGCATC----aaaa----aaaa-TGAGAGACG 158
| |||||||||||||||||| || ||||| |||| |||| |||| | |||||||
Sbjct 146 CTTATCTATCTAATCCTCTGTTTCTCTCCACATCAAAAAAAACCTCAAAATTAAGAGACG 205
Query 159 AATTCGTGATAATGGGTTCGCTGAAGGAAAGG-CAAAGAAGAGACATGGAAGAAGATGAA 217
|||||| ||||||||||||||| |||| |||| ||| |||||||||||||||||| ||||
Sbjct 206 AATTCGAGATAATGGGTTCGCTTAAGG-AAGGTCAAGGAAGAGACATGGAAGAAGGTGAA 264
Query 218 TCA-AAGGAGCCACTTTTGATGGCACAGAACCAGAGATTCACTATGTTCCCCATTAGGTA 276
||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 265 TCAGAA-GAGCCGCTTTTGATGGCTCAGAACCAGAGATTCACTATGTTCCCCATTAGGTA 323
Query 277 CAAATCGATTTGGGAGATGTATAAGAAGGCTGAAGCCAGTTTCTGGACTGCTGAAGAGGT 336
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 CAAATCTATTTGGGAGATGTATAAGAAGGCTGAAGCCAGTTTCTGGACTGCTGAAGAGGT 383
Query 337 TGATCTTTCCACTGATGTGCAACAATGGGAAGCCTTGACGGATTCTGAGAAACATTTTAT 396
|||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||
Sbjct 384 TGATCTTTCCACTGATGTGCAACAGTGGGAGGCCTTGACGGATTCAGAGAAACACTTTAT 443
Query 397 CAGCCATGTTCTGGCTTTTTTCGCCGCGTCAGATGGTATTGTATTGGAGAATTTGGCTGC 456
||||||| ||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 444 CAGCCATATTCTGGCGTTTTTCGCAGCGTCAGATGGTATTGTTTTGGAGAATTTGGCTGC 503
Query 457 TAGATTCTTGAATGATGTCCAAGTTCCAGAGGCTCGTGCTTTCTATGGGTTTCAAATAGC 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 TAGATTCTTGAATGATGTCCAAGTTCCAGAGGCTCGTGCTTTCTATGGGTTTCAAATAGC 563
Query 517 CATGGAGAACATTCATTCAGAGATGTACAGCTTACTTCTGGAGACATTCATAAAGGACTC 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 CATGGAGAACATTCATTCAGAGATGTACAGCTTACTTCTGGAGACATTCATAAAGGACTC 623
Query 577 GAAGGAGAAGGATAGATTGTTCAATGCTATCGAGACCATTCCTTGTATTTCCAAGAAGGC 636
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 624 GAAGGAGAAGGATAGATTGTTCAATGCTATCGAGACCATTCCTTGTATATCCAAGAAGGC 683
Query 637 AAAATGGTGTTTAGATTGGATTCAGAGTCCTTTGTCGTTTGCTGTGAGGTTGGTTGCTTT 696
|||||||||||||||||||||||| |||||| ||||||||||||||||| |||| |||||
Sbjct 684 AAAATGGTGTTTAGATTGGATTCAAAGTCCTATGTCGTTTGCTGTGAGGCTGGTCGCTTT 743
Query 697 TGCATGCGTCGAAGGAATTTTCTTCTCAGGAAGTTTCTGTGCCATCTTCTGGCTTAAGAA 756
|||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 744 TGCATGTGTCGAAGGAATCTTCTTCTCAGGAAGCTTCTGTGCCATCTTCTGGCTAAAGAA 803
Query 757 GAGGGGTCTTATGCCGGGTTTGACCTTTTCAAACGAGCTTATATCGAGAGACGAGGGGCT 816
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 804 GAGGGGTCTTATGCCGGGTTTGACCTTCTCAAACGAGCTTATATCGAGAGACGAGGGGCT 863
Query 817 CCACTGTGACTTTGCGTGTCTCTTGTACAGTTTGCTGCAGAAGCAGCTTCCGTTGGAGAA 876
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 864 CCACTGTGACTTTGCGTGTCTCTTGTACAGTTTGCTGCAGAAGCAGCTTCCATTGGAGAA 923
Query 877 AGTTTATCAGATTGTTCACGAGGCAGTGGAAATTGAGACAGAGTTTGTCTGCAAGGCTCT 936
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 AGTTTATCAAATTGTTCACGAGGCAGTGGAAATTGAGACAGAGTTTGTCTGCAAGGCTCT 983
Query 937 TCCATGTGATCTGATCGGAATGAACTCAAACCTCATGAGTCAGTACATACAATTTGTCGC 996
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 984 TCCATGTGATCTGATCGGAATGAACTCAAACCTCATGAGTCAATACATACAATTTGTCGC 1043
Query 997 TGACCGTCTTCTGGTTACCTTGGGATGTGAAAGGAGATACAAAGCAGAAAATCCATTTGA 1056
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1044 TGACCGTCTTCTGGTTACCTTGGGATGTGAAAGGACATACAAAGCAGAAAATCCATTTGA 1103
Query 1057 CTGGATGGAGTTCATTTCTCTACAAGGAAAGACAAACTTCTTTGAGAAGAGAGTGGGAGA 1116
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1104 CTGGATGGAGTTCATATCTCTGCAAGGAAAGACAAACTTCTTTGAGAAGAGAGTGGGAGA 1163
Query 1117 GTATCAGAAGGCATCGGTTATGTCGAACCTCCAAAATGGAAGTAAGAACTACGAATTCAC 1176
||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1164 GTATCAGAAGGCATCAGTTATGTCGAACCTCCAAAATGGAAATCAGAACTACGAATTCAC 1223
Query 1177 AACTGAAGAGGACTTCTGAATGAAACCCCCATCGAATCTGGAAGGGCTCATCAAAGTT-A 1235
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||| |
Sbjct 1224 GACTGAAGAGGACTTTTGAATGAATCCGCCATCGAATCTGGAAGGGCTCATCAAAGTTTA 1283
Query 1236 GATTCTTTATGAGTCA 1251
||||||||||||||||
Sbjct 1284 GATTCTTTATGAGTCA 1299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61495667625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5