BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479869
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23600.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1216 0.0
> AT3G23600.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:8473775-8475858 FORWARD LENGTH=981
Length=981
Score = 1216 bits (658), Expect = 0.0
Identities = 831/907 (92%), Gaps = 41/907 (5%)
Strand=Plus/Plus
Query 1 GTTTCTTTGTCTCATCTCTCTGTTTTTCTGAAGAACTAACACATGTCGGGACCTAAGTGC 60
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 17 GTTTCTTTGTATCATCTCTCTGTTTTTCCGAAGAACTAACACATGTCGGGACCTCAGTGC 76
Query 61 TGCGAAAACCCGCCGACTCTGAACCCGGTTTCCGGGTCGGGTCATGTCGAGAAGCTGGGT 120
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 77 TGTGAAAACCCGCCAACTCTTAACCCGGTTTCCGGGTCGGGTCATGTCGAGAAGCTGGGT 136
Query 121 GGGCTTGATGCCTACGTCTCCGGCTCTCCCGATTCCAAGCTCTGCGTCCTCCTCATTTCT 180
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 137 GGGCTTGATGCCTACGTCTCCGGCTCTGCCGAGTCCAAGCTCTGCGTCCTCCTCATTTCT 196
Query 181 GATATCTTTGGTTATGAAGCTCCAAACTTGAGGGCGCTTGCGGATAAGGTTGCAGCTTCT 240
||||| ||||||| ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 197 GATATTTTTGGTTTTGAAGCTCCAAACTTAAGGGCGCTTGCGGACAAGGTTGCAGCTTCT 256
Query 241 GGATTCTATGTTGTGGTTCCTGATTACTTTGGTGGAGATCCTTATGATCCCTCTAACCAG 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 257 GGATTCTATGTTGTGGTTCCTGATTACTTTGGTGGAGATCCTTATAATCCCTCTAACCAG 316
Query 301 GACAGACCCATCGCTGTCTGGATCAAAGACCATGGCTGGGATAAGGGCTTCGACAACACC 360
|||||||||||| ||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 317 GACAGACCCATCCCTGTCTGGATCAAAGACCATGGCTGTGATAAGGGCTTTGAAAACACG 376
Query 361 AAACCAGTACTTGAAGCTATAAAGAACAAAGGCATAACTGCCATTGGAGCCGCAGGGATG 420
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 AAACCAGTACTTGAAACCATAAAGAACAAAGGCATAACTGCCATTGGAGCCGCAGGGATG 436
Query 421 TGTTGGGGTG------T-G-G-TGGAACTGTCTAAAGAAGAGCTTATTCAAGCAGCTGTT 471
|||||||||| | | | |||||||||||||||||||||||||||||||||||||
Sbjct 437 TGTTGGGGTGCAAAAGTAGTGGTGGAACTGTCTAAAGAAGAGCTTATTCAAGCAGCTGTG 496
Query 472 TTGCTTCATCCTTCTTTTGTCACA-GTTGATGATATCAA-GGCTGGGAAGGCTCCAATTG 529
|||||||||||||||||||||| | |||||||||||||| || |||||||||||||||||
Sbjct 497 TTGCTTCATCCTTCTTTTGTCA-ATGTTGATGATATCAAAGG-TGGGAAGGCTCCAATTG 554
Query 530 CTATATTAGGAGCTGAGATTGATCAAATGTCCCCACCAGCACTCTTGAAGCAATTTGAGG 589
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CTATATTAGGAGCTGAAATTGATCAAATGTCCCCACCAGCACTCTTGAAGCAATTTGAGG 614
Query 590 AGATTCTAGCTTCCAAACCCGAGGTGAATAGTTACGTGAAGATATACCCGAAAGTGTCAC 649
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 615 AGATTCTATCTTCCAAACCCGAGGTGAATAGTTACGTGAAGATACACCCGAAAGTGTCAC 674
Query 650 ACGGTTGGACAGTTAGATACAGCATCGATGATCCAGAGGCGGTTAAAGCTGCAGAAGAAG 709
|||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||
Sbjct 675 ACGGATGGACAGTTAGATACAACATCGATGAACCAGAGGCGGTTAAAGCAGCAGAAGAAG 734
Query 710 CTCACAAAGAGATGCTTGATTGGTTTGCGACATACGTCAAATGATTTGAGAAAGAAA-A- 767
||||||| ||||||||||||||||||| ||| ||| ||||||||||||||||||||| |
Sbjct 735 CTCACAAGGAGATGCTTGATTGGTTTGTGACCTACATCAAATGATTTGAGAAAGAAAGAA 794
Query 768 ---------CT-T--C---ATATATGCAAAGAATAAAAATTAAAGAGAGACAAAGCAAAA 812
|| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 795 AGGTATTGTCTATTACTTCATATATGCAAAGAATAAAAATTAAAGAGAGACAAAGCAAAA 854
Query 813 CTCTTGGTT--TGT---A-TTTC-AGTTTCTAC-GT-TT--GAAGCATTCTGTGAGATTC 861
||||||||| ||| | |||| | |||||| || || |||||||||| ||||||||
Sbjct 855 CTCTTGGTTGGTGTTTCAATTTCTACTTTCTATAGTCTTTTGAAGCATTCTCTGAGATTC 914
Query 862 TGTGATA 868
|||||||
Sbjct 915 TGTGATA 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43753942037
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5