BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479874
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23620.1 | Symbols: | Ribosomal RNA processing Brix domain ... 1775 0.0
> AT3G23620.1 | Symbols: | Ribosomal RNA processing Brix domain
protein | chr3:8480025-8482157 FORWARD LENGTH=1351
Length=1351
Score = 1775 bits (961), Expect = 0.0
Identities = 1156/1246 (93%), Gaps = 29/1246 (2%)
Strand=Plus/Plus
Query 1 AAAGTTGCTTCCAATTGTGAGGCA--CACTAAAACCCTAGACTCCATATC--T---T--- 50
|||||||||||||||||||||| | |||||||||||||||||||||||| | |
Sbjct 1 AAAGTTGCTTCCAATTGTGAGG-AGGCACTAAAACCCTAGACTCCATATCAATCAATCGA 59
Query 51 -----C---CTCTCTTCTTTCGGAGCCGTCGCTTGTGAAAATTTCCGGCGATTGATC--A 100
| ||||||||||||||||||||||||||||||| |||||||||||| | | |
Sbjct 60 AAAACCTTTCTCTCTTCTTTCGGAGCCGTCGCTTGTGAAACTTTCCGGCGATTTAACAGA 119
Query 101 GTCATGATGGAAATACGAACTCCGAAGACTGGCAAAGCCAAACGTGTACTCGAAAAG-CG 159
||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||| ||
Sbjct 120 GTCATGATGGAAATACGAACTCCGAAGACTGGCAAAGCCAAGCGTGTTCTCG-AAAGCCG 178
Query 160 AGCTCCTAAGTTGGTTGAAACTGGGAAGACGACATTGATACTTCATGGAACAAAGACGAG 219
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 179 AGCTCCTAAGTTGGTTGAAACTGGGAAGAAGACGTTGATACTTCATGGAACAAAGACGAG 238
Query 220 TGCTACACTTAGCTCTGTATTAATGGAACTGTATCGTTTGAAGAAGGGAGGTGCCATTAG 279
||||||||||||||||||| | | |||||| || ||||||||||||||||||||||| ||
Sbjct 239 TGCTACACTTAGCTCTGTAATGACGGAACTCTACCGTTTGAAGAAGGGAGGTGCCATCAG 298
Query 280 ATATTCAAGAAGGAATGAGAATATTAGGCCTTTTGAGAGTGGTGGTGAAACTTCATTAGA 339
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 299 ATATTCAAGGAGGAATGAGAATATTAGGCCTTTCGAGAGTGGAGGTGAAACTTCATTAGA 358
Query 340 GTTCTTCTCTCAGAAAACTGATTGTAGCATTTTTGTGTATGGTTCTCACACGAAGAAACG 399
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGTATGGTTCTCACACGAAGAAACG 418
Query 400 ACCTGACAATCTTGTACTTGGGAGAATGTATGATCACCAGGTCTATGATCTTATAGAAGT 459
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 419 ACCTGACAATCTTGTACTTGGGAGAATGTATGATCACCAAGTCTATGATCTTATAGAAGT 478
Query 460 TGGGATTGAGAACTTTAAATCCTTGCTGGCGTTTTCGTATGACAAGAAATTCGCTCCTCA 519
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 479 TGGGATTGAGAACTTTAAATCCTTGCGGGCGTTTTCGTATGACAAGAAATTCGCACCTCA 538
Query 520 TGAAGGATCAAAGCCTTTCATTTGCTTTACTGGTGAAGGTTTTGAGAATGTACCAGAGCT 579
||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 539 TGAAGGAACAAAGCCTTTCATTTGCTTTATTGGTGAAGGTTTTGAGAATGTATCAGAGCT 598
Query 580 TAAACATCTAAAAGAAGTCCTTACTGATCTGTTTCGTGGCGAGGTTGTGGATAATCTAAA 639
||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 599 TAAGCATCTCAAAGAAGTCCTCACTGATCTTTTTCGTGGCGAGGTTGTGGATAATCTAAA 658
Query 640 TCTTACTGGACTAGACCGAGCTTACGTATGTTCAGCTATATCCCCAACTAAGGTTTTCCT 699
||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 659 TCTTACTGGTTTAGACCGCGCTTACGTATGTTCAGCTATATCCCCAACAAAGGTTTTCCT 718
Query 700 TACTCATTGCGCATTGAAGCTTAAAAAGTCAGGCTCCATTGTTCCTAGAATGGAGCTTGT 759
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 719 TACTCATTGCGCATTGAAGCTTAAAAAGTCAGGATCCATTGTTCCGAGAATGGAGCTTGT 778
Query 760 TGAAGTCGGTCCATCCATGGACTTGGTTATCAGGCGTAATCGTCTTCCTAACGAAAGCTT 819
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 779 TGAAGTCGGTCCATCCATGGACTTGGTTATCAGGCGTAATCGTCTTCCTAACGATAGCTT 838
Query 820 AATGAAAGAAGCAATGAGAACATCCAAGGATAAGCCTAAGAAGAAGGTGAAAAACGTTGA 879
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 839 AATGAAAGAAGCAATGAGAACATCCAAGGATAAGCCTAAGAAGAAGGAGAAAAACGTTGA 898
Query 880 TCAAGATGCAGTACTAGGGAAGACTGGGAAGATTTACATGCCTGATCAGAAGCTGGGCGA 939
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 899 TCAAGATGCAGTACTAGGGAAGACTGGGAAGATTTATATGCCTGATCAGAAGCTGAAAGA 958
Query 940 TATGAAATTGCTCGATAAATCCAAGGGATTGAAGAGAGAGCGGAAAGAGGCTAAGCTTAA 999
|||||| || |||||||||| ||||||| |||||||||||||||||| |||||||||||
Sbjct 959 AATGAAACTGTTCGATAAATCTAAGGGATCGAAGAGAGAGCGGAAAGACGCTAAGCTTAA 1018
Query 1000 GCATAAGGAAGAGACTGTTTCCAAAAAGATGAAAGAGTCTTCTGAGTGACTCACCAGACC 1059
||||||||||||||||||| ||||||||||||| | ||||||||||||||||| ||||||
Sbjct 1019 GCATAAGGAAGAGACTGTTGCCAAAAAGATGAAGGTGTCTTCTGAGTGACTCAACAGACC 1078
Query 1060 ACTCTTGGCTCTTCTACATCAACAGTTTTCAATATGAGGAAGATGAA--GATTTTGTAGT 1117
|||||||||||| | | ||||||| |||||||||| |||||||||| |||||||||||
Sbjct 1079 ACTCTTGGCTCTGC-A--TCAACAGCTTTCAATATGTGGAAGATGAAATGATTTTGTAGT 1135
Query 1118 GAGAATGGGCATGGCTTTTATTTTTCCATTAGAATCTATAACTGAATGTTTTTTATACGC 1177
| |||| || || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1136 GT-AATGAGCTTGACTTTTATTTTTCCATTAGAATCTATAACTGAATGTTTTCTATACGC 1194
Query 1178 TAATATTTTATTAAGTTGACTTTGTTTTGTTAAATTTCTGCAGCAA 1223
||||||||||||||| ||| |||||||||||||| ||||||||||
Sbjct 1195 TAATATTTTATTAAGGTGATTTTGTTTTGTTAAAACTCTGCAGCAA 1240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60090052365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5