BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479886
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23700.1 | Symbols: | Nucleic acid-binding proteins superfa... 1932 0.0
> AT3G23700.1 | Symbols: | Nucleic acid-binding proteins superfamily
| chr3:8531429-8533788 REVERSE LENGTH=1485
Length=1485
Score = 1932 bits (1046), Expect = 0.0
Identities = 1174/1235 (95%), Gaps = 12/1235 (1%)
Strand=Plus/Plus
Query 2 ACCTTCAATCTCCGCGGCTTTTTTGCTCTGCCGCGTAACAATGGCGGTTTTCAGTGGCGC 61
|||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||
Sbjct 7 ACCTTCAATCTCCGTGGCTTTTTTGCTCTACCGCGCAACAATGGCGGTTTTTAGTGGCGC 66
Query 62 TACTACATTGGGTTCTGTATCTTTCTCTTCTCATCTCTTTGACCAACAATCCACTTTCCT 121
|||||| || |||||||| || ||| | ||||||||||| ||||||||||||||||||||
Sbjct 67 TACTACTTTAGGTTCTGTTTCATTCGCCTCTCATCTCTTCGACCAACAATCCACTTTCCT 126
Query 122 CTCTTGCCCACTTAGACTCCTTCCTTCCTCTTCCTCATCCTCTTCTCCGTCACATAGAAA 181
|||||||||||||||||||||||||||||| | || || |||||| | || |||||||
Sbjct 127 CTCTTGCCCACTTAGACTCCTTCCTTCCTCGT-CT--TCTTCTTCTTC--CA-ATAGAAA 180
Query 182 CCCTCTCCTCTGCATTGTCAAATCTTTCTCAAGCTCCGCCACCGCAGATACCGATAGAAA 241
| ||||| ||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 181 CTCTCTCGTCTGCATAGTCAAATCCTTCTCAAGCTCCGCCACAGCAGATACCGATAGAAA 240
Query 242 CTCCGATCAATCAACCTCTTCCTCAGTCCTCTCCGCCTCCAATTCTCTTCTCCGAGACAC 301
||||||||||||| |||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 241 CTCCGATCAATCAGCCTCTTCCTCAGTCCTCTCCGCTTCCAATTCTCTTCTCCGTGATAC 300
Query 302 CTCCGATG-A---T--GCTGCTGGACCCAGTGATTGGAAAACGGCAAAAGCTTATTGCAA 355
|||||| | | | ||||| ||||| || ||||||||||| |||||||||||||| ||
Sbjct 301 CTCCGACGAAGCTTCAGCTGCAGGACCAAGCGATTGGAAAACAGCAAAAGCTTATTGTAA 360
Query 356 AAGTGGTGATACATTTGAAGGTGAAGTTCAAGGCTTTAATGGTGGAGGCTTACTTATTCG 415
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 AAGTGGTGATACATTTGAAGGTGAAGTTCAAGGCTTTAATGGTGGTGGCTTACTTATTCG 420
Query 416 TTTTCATTCTCTTGTGGGTTTTCTTCCTTATCCACAATTAAGTCCTTCACGTTCTTGTAA 475
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 TTTTCATTCTCTTGTGGGTTTTCTTCCTTATCCACAATTAAGTCCTTCCCGTTCTTGTAA 480
Query 476 AGAGCCTCAGAAAAGTATTCATGAGATAGCTAAGACTTTGGTTGGTTCTAAACTTCCTGT 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGAGCCTCAGAAAAGTATTCATGAGATAGCTAAGACTTTGGTTGGTTCTAAACTTCCTGT 540
Query 536 GAAGGTTGTTCAAGCTGATGAGGAAAATAGAAAATTGATTTTATCTGAGAAGTTAGCATT 595
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 541 AAAGGTTGTTCAAGCTGATGAGGAAAATAGAAAGTTGATTTTATCTGAGAAGTTAGCATT 600
Query 596 ATGGCCAAAGTATTCACAAAACGTTAATGTTGGGGATGTGTTTAATGGAAGAGTAGGTTC 655
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 601 ATGGCCAAAGTATTCACAAAACGTTAATGTTGGGGATGTGTTTAACGGAAGAGTAGGTTC 660
Query 656 TGTTGAGGACTATGGTGCCTTTATCCACTTGCGTTTCGATGATGGTCTTTATCATTTAAC 715
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 TGTTGAGGACTATGGTGCCTTTATCCACTTGCGTTTTGATGATGGTCTTTATCATTTAAC 720
Query 716 CGGACTAGTGCATGTCTCTGAAGTATCGTGGGATTATGTTCAAGATGTTAGGGATGTGCT 775
||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||
Sbjct 721 TGGACTAGTGCATGTCTCCGAAGTATCATGGGATTACGTTCAAGATGTTAGGGATGTACT 780
Query 776 ACGCGATGGTGATGAGGTTCGGGTTATAGTCACGAATATTGACAAAGAGAAATCAAGGAT 835
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACGCGATGGTGACGAGGTTCGGGTTATAGTCACGAATATTGACAAAGAGAAATCAAGGAT 840
Query 836 TACACTATCTATCAAACAACTAGAAGATGATCCTCTTCTAGAAACATTAGACAAAGTGAT 895
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TACACTATCCATCAAACAACTAGAAGATGATCCTCTTCTAGAAACATTAGACAAAGTGAT 900
Query 896 TTTGAAGGACAGCTCTAGTGGATCTCCTTCGCTAAGCTTGAACAATGGGGATACAATTGA 955
|||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 901 TTTGAAGGACAGTTCTACTGGATCTCCTTCGCTAAGCTCGAACAATGGGGATACAATTGA 960
Query 956 ACCTCTTCCAGGGCTAGAAACAATACTTGAAGAACTTTTAAAGGAAGATGGAATAGAAGC 1015
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 961 ACCTCTTCCAGGGCTAGAAACAATACTTGAAGAGCTTTTAAAGGAAGATGGAATAGAAGC 1020
Query 1016 TGTGAAAATCAACCGGCAAGGATTTGAGAAAAGAGTGGTTTCACAAGACCTACAACTTTG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGTGAAAATCAACCGGCAAGGATTTGAGAAAAGAGTGGTTTCACAAGACCTACAACTTTG 1080
Query 1076 GCTCTCAAATACACCGCCTTCTGATGGGAAGTTTGTTCTTCTTGCCCGTGCTGGAAGACA 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCTCTCAAATACACCGCCTTCTGATGGGAAGTTTGTTCTTCTTGCCCGTGCTGGAAGACA 1140
Query 1136 GGTGCAAGAGATACACTTGACAACGTCGCTCGAACAAGGAGGAATCAAGAAAGCGCTTCA 1195
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1141 GGTGCAAGAGATACACTTGACAACGTCTCTGGAACAAGGAGGAATCAAGAAAGCGCTTCA 1200
Query 1196 GCATGTACTAGAACGCGTCCCCTAAGAACCCTAAA 1230
||||||||||||||||||||||||||||||| |||
Sbjct 1201 GCATGTACTAGAACGCGTCCCCTAAGAACCCGAAA 1235
Score = 241 bits (130), Expect = 2e-62
Identities = 168/184 (91%), Gaps = 12/184 (7%)
Strand=Plus/Plus
Query 1228 AAACTCTTGGCAATATAACTTCAAGTGGAGCAGGCAAGTAGGCAACTACTTCAG-AATAT 1286
||||||||| |||| ||||||||||| | | | || || | | |||||||||| |||||
Sbjct 1281 AAACTCTTGCCAATGTAACTTCAAGT-G-G-A-GC-AG-A-G--ACTACTTCAGAAATAT 1331
Query 1287 GCTTAAAAGGCAAAAATGCAAATTCATTTGTATCATCATTATATGTCACACATAACACAA 1346
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 TCTTAAAAGGCAAAAATGCAAATTCATTTGTATCATCATTATATGTCACACATAACACAA 1391
Query 1347 ACCTATGAAAATAT--GTGTATACTCGATGTTTTTAGTTACACATTATAAACTTCATTAA 1404
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1392 ACCTATGAAAATATATGTGTATACTCAATGTTTTTAGTTACACATTATAAACTTCATTAA 1451
Query 1405 CATA 1408
||||
Sbjct 1452 CATA 1455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69377153190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5