BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479887
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23710.1 | Symbols: | Tic22-like family protein | chr3:8534... 1753 0.0
> AT3G23710.1 | Symbols: | Tic22-like family protein | chr3:8534032-8536374
FORWARD LENGTH=1197
Length=1197
Score = 1753 bits (949), Expect = 0.0
Identities = 1087/1150 (95%), Gaps = 23/1150 (2%)
Strand=Plus/Plus
Query 1 ATCATTTTCCCGAGAAAA-TAATGAATTCAAACATTTTCCCACCATCGAAACATCAAAAC 59
|||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 10 ATCATTTTCCCGAGAAAACT-ATGAATTCAAACATTTTCCCACCATCGAAACAACAAAAC 68
Query 60 CAG-TT--TAAAATACAACAATCCTTCTCGAATCTCCAATCTCAATGCTCCAATCTACTC 116
|| || ||| ||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 69 GAGCTTAATAATATACAACAATCCTTCTCAAATCTCCAATCTCAATGCTCCAATTTACTC 128
Query 117 CACAACGTTTCGCAAACCCTTAATCCTCTCTTCAACGCCAACAAGAACAACAAC---CCT 173
| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 129 CTCAACGTTTCACAAACCCTTAATCCTCTCTTCAACGCCAACACGAACAACAACAAACCT 188
Query 174 AATATCTTCTCTGCTCTCAATTCGTTTCGTGATCAAGCTAAGCAAGCTTTAGATTCTAGA 233
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 AATATATTCTCTGCTCTCAATTCGTTTCGTGATCAAGCTAAGCAAGCTTTAGATTCTAGA 248
Query 234 ATCTCTCGTTTCAATTCTGGTAAGGCACCAGTTTGGGCGAGAATTTCTGACGACGTCGGT 293
|||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 249 ATCTCTCGATTCAATTCTGGTAAGGCACCTGTCTGGGCGAGAATTTCTGACGA------- 301
Query 294 GGCGGTGGTGGTGCGAGGACTCAAGTGACGGCTCCGGTTCGTGGAAGCGGGAAAGGATTA 353
|||||||||||||||| |||| ||||||| |||| |||| ||||||||||||||||||
Sbjct 302 --CGGTGGTGGTGCGAGGGCTCAGGTGACGGTTCCGATTCGCGGAAGCGGGAAAGGATTA 359
Query 354 TCGGCTGATGCTATTGAGGAGAGATTGGCGGGAGTTCCTGTTTACGCGTTGAGTAATTCG 413
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTGCTGATGCTATTGAGGAGAGATTGGCGGGAGTTCCTGTTTACGCGTTGAGTAATTCG 419
Query 414 AATGAGGAATTTGTGTTGGTTTCAGGGACTTCTTCTGGGAAATCTCTGGGTTTGTTGTTT 473
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 420 AATGAGGAGTTTGTGTTGGTTTCAGGGACTTCCTCTGGGAAATCTCTGGGTTTGTTGTTT 479
Query 474 TGTAAAGAGGAAGATGCAGAGACGCTTCTTAAACAGTTGAAGAGTATGGATCCTCGTATG 533
||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||
Sbjct 480 TGTAAAGAGGAAGATGCAGAGACTCTTCTTAAAGAGATGAAGAGTATGGATCCTCGTATG 539
Query 534 AGGAAAGAAGGTTCAAAAGTTGTTGCTCTTGCTCTTAGCAAGGTGTTTCAGTTAAAAGTT 593
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 540 AGGAAAGAAGGTTCAAAAGTTGTTGCTCTTGCTCTTAGCAAGGTGTTCCAGTTAAAAGTT 599
Query 594 AATGGTGTGGCATTTAGGTTGATTCCTGAGTCTACTCAAGTGAAAAATGCCTTGAAGGAA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AATGGTGTGGCATTTAGGTTGATTCCTGAGTCTACTCAAGTGAAAAATGCCTTGAAGGAA 659
Query 654 AGGAAAACAGCTGGTATCGATGATGATGACTTCCATGGTGTTCCGGTTTTCCAGTCAAAG 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGGAAAACAGCTGGTATCGATGATGATGACTTCCATGGTGTTCCGGTTTTCCAGTCAAAG 719
Query 714 AGCTTGATTCTACGAAGTGAAAACATGAGTTATCGCCCTGTTTTCTTCAGAAAGGAGGAC 773
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 720 AGCTTGATTCTACGAAGTGAAAACATGAGTTATCGCCCTGTTTTCTTTAGAAAGGAGGAC 779
Query 774 TTGGAAAAGTCCCTAATACGAGCGTCCAGCCAACAGAACCGACTCAACCCTGCTCTGAAA 833
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 780 TTGGAAAAATCTCTAATACGAGCGTCCAGCCAACAGAACCGACTTAACCCTGCTCTGAAA 839
Query 834 CCAGGCGATATTCAGGTTGCAGTTTTTGAAGATATTGTCAAGGGAATGAAGGAAAGCACG 893
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 840 CCAGGCGATATTCAGGTTGCAGTTTTCGAAGATATTGTCAAGGGAATGAGGGAAAGCACG 899
Query 894 ACGTCGAACTGGGACGACATTGTGTTTATACCGCCTGGTTTTGAGGTTTCAACTGAGCAA 953
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ACGTCAAACTGGGACGACATTGTGTTTATACCGCCTGGTTTTGAGGTTTCAACTGAGCAA 959
Query 954 ACCCAGGAGTAGGTGAAATCCTTGGAGCATCGTAAAACCTCAACCTCAAA-CTTCTCCAC 1012
|| |||||||| |||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct 960 ACACAGGAGTAAGTGAAATCCTTGGAGCATCGTAAAACCTCAACA-CAATGCTTCTCC-C 1017
Query 1013 TTT-CATATTCCTATCTCATCATTCAACAACTTGATGAACACAGAGAGTTGGAAATAGCG 1071
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1018 TTTTCATATTCCTATCTCATCATTCAACAACTTGATGAACACAGCGAGTTGGAAATAGCG 1077
Query 1072 TTGATGATGTTACCTCCATTAACATCCTTCTCCAATC-CTTGCTTTCTCTATGTCGTCTT 1130
|||||||||||| |||||||||||||||||||||||| || ||||| |||||||| ||||
Sbjct 1078 TTGATGATGTTAACTCCATTAACATCCTTCTCCAATCTCT-GCTTTTTCTATGTCATCTT 1136
Query 1131 ATGAGGTTTT 1140
||||| ||||
Sbjct 1137 ATGAGTTTTT 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5