BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479888
Length=1054
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23730.1 | Symbols: XTH16 | xyloglucan endotransglucosylase/... 1703 0.0
> AT3G23730.1 | Symbols: XTH16 | xyloglucan endotransglucosylase/hydrolase
16 | chr3:8550110-8551335 FORWARD LENGTH=1075
Length=1075
Score = 1703 bits (922), Expect = 0.0
Identities = 1013/1057 (96%), Gaps = 6/1057 (1%)
Strand=Plus/Plus
Query 1 TCACATCTCCTCGAACAAACAAATCAT-AACCCATTTTCCTTCATAAATCTCTAAAATAA 59
|||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct 16 TCACATCTCCTCGAACAAACAAATTATAAACCCATTTTCCTTCATAAATTTCTAAAATAA 75
Query 60 AACCCCTT-AACTTTCATTTACACCATCCAACCCCCAATGGGTCAAATCTTGAACCTTAC 118
|||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||| |||
Sbjct 76 AACCCCTTAAACTTTCATTCACATCATCCAACCCCCAATGGGTCGAATCTTGAACCGTAC 135
Query 119 CGTGTTAATGACTCTTCTAGTCGTAACAATGGTCGGAACAGCATTCTCCGGTAGCTTCAA 178
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 136 CGTGTTAATGACTCTTCTAGTCGTAACAATGGCCGGAACAGCATTCTCCGGTAGCTTCAA 195
Query 179 CGAAGAGTTTGACTTAACTTGGGGTGAACAAAGAGGCAAAATCTTCAGTGGAGGCAAGAT 238
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 196 CGAAGAGTTTGACTTAACTTGGGGTGAACACAGAGGCAAAATCTTCAGTGGAGGAAAAAT 255
Query 239 GTTGTCATTGTCACTAGACCGGGTTTCCGGGTCGGGTTTTAAGTCCAAGAAAGAATATTT 298
||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 256 GTTGTCACTCTCACTAGACCGGGTTTCCGGGTCGGGTTTTAAATCCAAGAAAGAATATTT 315
Query 299 ATTTGGAAGAATCGACATGCAACTTAAACTCGTCGCCGGTAACTCTGCCGGAACCGTCAC 358
|| ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 316 GTTCGGAAGAATCGACATGCAGCTTAAACTCGTCGCCGGTAACTCCGCTGGAACCGTCAC 375
Query 359 TGCCTACTACTTGTCATCGGAAGGACCAACACACGACGAGATAGATTTTGAGTTTCTTGG 418
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 376 TGCCTACTACTTGTCATCGGAAGGACCAACACACGACGAGATAGACTTTGAGTTTCTTGG 435
Query 419 TAATGAAACAGGGAAGCCTTATGTTCTTCACACTAATGTCTTTGCACAAGGCAAAGGAAA 478
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 436 TAATGAAACAGGGAAGCCTTATGTTCTTCACACTAATGTATTTGCTCAAGGCAAAGGAAA 495
Query 479 CAGAGAACAACAGTTTTATCTCTGGTTTGATCCAACCAAGAACTTCCACACTTATTCTCT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 CAGAGAACAACAGTTTTATCTCTGGTTTGATCCAACCAAGAACTTCCACACTTATTCTCT 555
Query 539 TGTTTGGAGACCTCAACACATCATATTTATGGTAGATAATGTTCCAATCAGAGTATTTAA 598
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 556 TGTCTGGAGACCACAACACATCATATTTATGGTAGATAATGTTCCAATCAGAGTATTCAA 615
Query 599 CAATGCAGAGAAACTTGGCGTACCATTTCCCAAGAACCAACCAATGAAGATTTACTCGAG 658
|||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 616 CAATGCAGAGCAACTTGGTGTTCCATTTCCCAAGAACCAACCAATGAAGATATACTCGAG 675
Query 659 TTTATGGAATGCAGATGATTGGGCTACAAGAGGTGGTTTGGTTAAGACAGATTGGTCTAA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TTTATGGAATGCAGATGATTGGGCTACAAGAGGTGGTTTGGTTAAGACAGATTGGTCTAA 735
Query 719 AGCTCCTTTCACAGCTTACTACAGAGGCTTTAACGCTGCGGCTTGTACTGTTTCTTCAGG 778
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 736 AGCTCCTTTCACAGCTTACTACAGAGGCTTTAACGCTGCAGCTTGTACTGTTTCTTCAGG 795
Query 779 GTCATCTTTCTGTGATCCTAAGTTTAAGAGCTCTTTTACTAATGGTGAGTCACAAGTAGC 838
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 796 GTCATCTTTCTGTGATCCTAAGTTTAAGAGTTCTTTTACTAATGGTGAATCTCAAGTGGC 855
Query 839 TAATGAGCTTAATGCTTATGGGAGAAGAAGATTGAGATGGGTTCAAAAATATTTTATGAT 898
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 856 TAATGAGCTTAATGCTTATGGGAGAAGAAGATTAAGATGGGTTCAGAAGTATTTTATGAT 915
Query 899 TTATGATTATTGTTCTGATTTGAAAAGGTTTCCTCAAGGATTCCCACCAGAGTGTAGGAA 958
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 916 TTATGATTATTGTTCTGATTTAAAAAGGTTTCCTCAAGGATTCCCACCAGAGTGTAGGAA 975
Query 959 GTCTAGAGTCTAAAA-CCAATGATTCTCTCTTTGTTGTTGTTTAGTGCAAATTAAATTCT 1017
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 GTCTAGAGTCTAAAAACCAATGATTCTCTCTTTGTTGTTGTTTAGTGCAAATTAAATTCT 1035
Query 1018 CTTTGTTGTTTTTGTTTTAATAAATTGATTTGATTTT 1054
||||||||||| | || |||||||||||||||||||
Sbjct 1036 CTTTGTTGTTTCT-TT--AATAAATTGATTTGATTTT 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51690937263
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5