BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479889
Length=1953
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23740.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1783 0.0
> AT3G23740.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: C globular stage, F mature embryo stage,
petal differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G14120.1); Has 155
Blast hits to 130 proteins in 48 species: Archae - 0; Bacteria
- 16; Metazoa - 19; Fungi - 48; Plants - 47; Viruses - 0;
Other Eukaryotes - 25 (source: NCBI BLink). | chr3:8551772-8554745
REVERSE LENGTH=2021
Length=2021
Score = 1783 bits (965), Expect = 0.0
Identities = 1262/1397 (90%), Gaps = 54/1397 (4%)
Strand=Plus/Plus
Query 594 GGACAGGGT-TTTCGATAAAGATTCAGCCGGAAGCTTATGTGGAAACACCAGCCCTTTGA 652
|||||| || | | |||||||||||| |||||||||| ||| || |||||||||||||||
Sbjct 630 GGACAGTGTCTAT-GATAAAGATTCAACCGGAAGCTTCTGTAGAGACACCAGCCCTTTGA 688
Query 653 CGAGGGTTAATGCATCCCTCCCC-AACAAGAGA-GCTGCATGCTCTAGGCGCAAGTTATT 710
||| |||| ||||| || |||| ||||| | | ||||||| ||||||| | ||| ||||
Sbjct 689 AGAGTGTTATTGCAT-CCACCCCTAACAA-AAATGCTGCATTCTCTAGGGGTAAGCTATT 746
Query 711 TAAGACACCAGGTTCTGTTAATTACAGAAGAATGCTTCCATATCTCAAAGATATTCAAGA 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 TAAGACACCAGGTTCTGTTAATTACAGAAGAATGCTTCCATATCTCAAAGATATTCAAGA 806
Query 771 AGATAATCCTTTTGATCATCAAAAGAACACAGAAGAGGTAACTCCATCATCGATGTT-AA 829
|||||||| || ||| ||||||||||||||| ||||| | | ||||| ||||||| ||
Sbjct 807 GGATAATCC--TT-ATCCTCAAAAGAACACAGAGGAGGTTATTTCATCACCGATGTTAAA 863
Query 830 -TC----TCTGAGAATGAAGGGACACAGGAAGTGGTGACATCAAATGTTACTAGAGAATC 884
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 CTCTGAGTCTGATAATGAAGGGACACAGGAAGTGGTGACATCAAATGTTACTAGAGAATC 923
Query 885 AGATACATGCTCTAATGAAAACGAAGAGCCCCTTTCTTGTGAACGTCTATCTGTATTTCC 944
|| |||| ||||| |||||||||||||||||||| ||||||||||| || ||||| ||
Sbjct 924 AGGTACAAGCTCTGATGAAAACGAAGAGCCCCTTCCTTGTGAACGTGTACCTGTAAATCT 983
Query 945 AGAACAGTCTGATCCTGACAAAGAACAAGAAACACAGATTAAGCATGTCATCTCAGATAC 1004
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 984 AGAACAGTCTGATCCTGACAAGGAACAAGAAACACAGATTAAGCATGTCATCCCAGATAC 1043
Query 1005 TGAAAATAATTTGGGCTCTGAGATCCCATTATCATCTCCTCTTGTTGGTTCAAGAAGTTC 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 TGAAAATAATTTGGGCTCTGAGATCCCATTATCATCTCCTCTTGTTGGTTCAAGAAGTTC 1103
Query 1065 AAGTGAGGTTGCTTCATCTGCTTTGCACAACACATTTCTCGACAATTTGGTGGGCGAAGG 1124
|||||| ||| ||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 1104 AAGTGAAGTTAATTCATCTGCATTGCACAACACATTTGTAGACAATTTGGTGGGCGAAGA 1163
Query 1125 AAACATGAATGGTGCAGAGATAACAGAAGCAAAAACCAGTGTAGAGCAACTAGAGGCAAA 1184
||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||| |
Sbjct 1164 AAACATGAATGGTGCAGAGATAACAGAAGCAAAGATCAGTGCAGAGGAACTAGAGGCACA 1223
Query 1185 TACATCAGATGCAACAGCTGAACTGATTGACCCTTCTGTTATATTGGCAACTCCTCCCT- 1243
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1224 TAGTTCAGATGCAACAGCTGAACTGGTTGACCCTTCTGTTATATTGGCAACTCCTTCCTC 1283
Query 1244 CTATTTCTCCCTCGAAAGGAATTCTGAAAAGAAGTATGAGAGGATGTAGAGGGATATGCT 1303
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 CT-TTTCTCCCTCGAAAGGAATTCTGAAAAGAAGTATGAGAGGATGTAGAGGGATATGCT 1342
Query 1304 CTTGTTTGAACTGCTCCTCCTTCCGCCTAAATGCAGAAAGAGCATTTGAATTCTCAAGAA 1363
||||||||||||||||||||||||| ||| | || |||||||||||||||||||||||||
Sbjct 1343 CTTGTTTGAACTGCTCCTCCTTCCGTCTACACGCCGAAAGAGCATTTGAATTCTCAAGAA 1402
Query 1364 ATCAGTTACAAGATACTGAAGTAATGGTTTTGGATCTAGTTGGAGAAATATCTCATCTCA 1423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 ATCAGTTACAAGATACTGAAGTAATGGTTTTGGATCTAGTTGGAGAAATATCTCATCTCA 1462
Query 1424 GGGATATGTTGGAGAAATATAATTCAGCAGATCACAGTGAATCCTACAAAAGTCAGGCTG 1483
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1463 GGGATTTGTTGGAGAAATATAATTCAGCAGATCACAGTGAACCCTACAAAAGTCAGGCTG 1522
Query 1484 GAGAAGCTGCAAAGAGAGCTTGTGAGGCTGCAGAGCTTGCAAAAAGCCGTCTCCATCAGA 1543
| |||||| | |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1523 GTGAAGCTTCGAAGAGAGCTTGTGAGGCTGCAGAGCTTGCAAAAAGCCGCCTCCACCAGA 1582
Query 1544 TGAACGATGAT-TATCAAGTTCATTGCAGAATCCCCAACGAACAACGAGCAAGAGTGAAA 1602
|||||||||| | |||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 1583 TGAACGATGACCT-TCAAATTCACTACAGAATCCCCAACGAACAACGAGCAAGAGTGAAA 1641
Query 1603 TTTGCTCATTATGTACACGAGAAGACGAT-G-AAC--C-T---A-CC-AA-A--TTGATC 1649
|||||||||||| |||||||||||||||| | || | | | || || | ||||||
Sbjct 1642 TTTGCTCATTATATACACGAGAAGACGATTGTAAAAGCATCCGAACCTAACAAATTGATC 1701
Query 1650 ACTAGATCACCCTGAAGCAACTAGGATGGATGCtttttttAATGTCATTATCTGTCTCCA 1709
| ||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct 1702 AGTAGATCACCCTGAAGCAACTAGGATGGGTACTTTTT--AATGTCATTATCTGTCTCCA 1759
Query 1710 GATTATCCAGTTACATGCT-TTTTT-------AATTTTGAAAAGTGAAA-AGGTATTACT 1760
|||||||||||| |||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 1760 GATTATCCAGTTTCATGCTCTTTTTTTTTTTTAATTTTGAAAAGTGAAAGAGGTATTACT 1819
Query 1761 AGCTGTCTTTTTCTTAT-GTCACCACCATCCTAAGCAGAGTAGAAGCATAGATCAAATTG 1819
||||||||||||||| | ||||||| |||||| || ||||||||||||||||||| ||
Sbjct 1820 AGCTGTCTTTTTCTTTTTGTCACCA---TCCTAAACATAGTAGAAGCATAGATCAAAGTG 1876
Query 1820 CCTTTATACATATAGTCCATGTGACCATATTTATTACAGTAtttttttttCCTGTTTTCa 1879
|| |||||||||||| |||||||| ||||||||||||| | |||||||||| | ||| ||
Sbjct 1877 CCATTATACATATAGACCATGTGATCATATTTATTACACT-TTTTTTTTTC-T-TTT-CA 1932
Query 1880 aaaa-a-aCATCTTGTTCTATGTACATAAACAAAGACTATAAAAGCAAA-CCTCCTGTGA 1936
|||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1933 AAAACACACATCTTGTTCTATGTACATACTCAAAGACTATAAAAGCAAAACCTCCTGTGA 1992
Query 1937 TCTCTTAGCAAGTTGCA 1953
|||||||||||||||||
Sbjct 1993 TCTCTTAGCAAGTTGCA 2009
Score = 259 bits (140), Expect = 7e-68
Identities = 212/245 (87%), Gaps = 12/245 (5%)
Strand=Plus/Plus
Query 283 CAAACGACGCCACCGGATTCCGAATTGTTAAGCAGTGTACCTATCCGTGAAGAGATCAAT 342
|||||||||||||| |||||||||||||| | | ||||| ||||||||||||||
Sbjct 367 CAAACGACGCCACCAGATTCCGAATTGTT----A--G---CTATCAGTGAAGAGATCAAT 417
Query 343 GGATCAGCAGTGAAGAAAAGTGATACTAATTTATGTAGCAAATCGGTTCTCCATCCATGT 402
||||||| |||||| ||||||||||||||| | || || ||||||||||| | |||||||
Sbjct 418 GGATCAGTAGTGAACAAAAGTGATACTAATCTCTGGAGAAAATCGGTTCTTCTTCCATGT 477
Query 403 TCTCGACCTAAGATATTCAAGAACACTGGTTCTTTTAGCTATAAGAGATTGCTTCCATAC 462
||||||||||||||||||||||| |||||| |||| |||||||||||| |||||||||||
Sbjct 478 TCTCGACCTAAGATATTCAAGAATACTGGTCCTTTCAGCTATAAGAGACTGCTTCCATAC 537
Query 463 TTGAAGCAAGCTGCAGATGATGGAACATCATCA--A-GCCAGTGCTCAAAACCTTTAAGC 519
|||| ||||||| |||||||||||||||||||| | ||| ||||||||| |||| ||
Sbjct 538 TTGATGCAAGCTTCAGATGATGGAACATCATCATCAAGCCGGTGCTCAAAGTCTTTGAGT 597
Query 520 CAGAA 524
|||||
Sbjct 598 CAGAA 602
Score = 233 bits (126), Expect = 4e-60
Identities = 234/282 (83%), Gaps = 23/282 (8%)
Strand=Plus/Plus
Query 1 ATGGCGGAATCAAATCAGATCTCTCGGAAGAGGATGCGATTCTCGTCTCCAT-CAGCTAC 59
||||||||||||||||| ||| |||||||||| ||||||||||||||| | | |||||||
Sbjct 16 ATGGCGGAATCAAATCAAATCCCTCGGAAGAGAATGCGATTCTCGTCTTC-TCCAGCTAC 74
Query 60 AGAGATCCTCACTCTAAGAAAATTACAGAATCAACGAATCG----CA----A-CT----- 105
|||||||||| ||| |||||||| ||| || |||||||||| || | ||
Sbjct 75 AGAGATCCTCCCTCAAAGAAAATCACAAAACCAACGAATCGCAACCACCGTATCTCAAAG 134
Query 106 --G---CCG--CTCGCCTCCATCAATCACCATCACTCTATGGAAAAATCGATTCGAAAAT 158
| ||| || || ||||||| ||||||||||||||| |||||||||||| |||||
Sbjct 135 CAGAAACCGATCTAGCGTCCATCATTCACCATCACTCTATCAAAAAATCGATTCTAAAAT 194
Query 159 CGTTCGTACGTATCCACGAGTCACCATCAAGGATATTCGTCTCCGACGCATCTTCTCTCC 218
| | |||||||||||||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 195 CACACCTACGTATCCACGAGCCACCATCAAAGATATTCGTCTCCGACGCGTCTTCTCTCC 254
Query 219 AAATCCGATCTCCACCGACTGCGAATGTAACGGCAAAGGTAA 260
|| |||||||||||||||||||||||||||| |||||| |||
Sbjct 255 AACTCCGATCTCCACCGACTGCGAATGTAACTGCAAAGATAA 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96736450215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5