BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479889 Length=1953 Score E Sequences producing significant alignments: (Bits) Value AT3G23740.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1783 0.0 > AT3G23740.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14120.1); Has 155 Blast hits to 130 proteins in 48 species: Archae - 0; Bacteria - 16; Metazoa - 19; Fungi - 48; Plants - 47; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | chr3:8551772-8554745 REVERSE LENGTH=2021 Length=2021 Score = 1783 bits (965), Expect = 0.0 Identities = 1262/1397 (90%), Gaps = 54/1397 (4%) Strand=Plus/Plus Query 594 GGACAGGGT-TTTCGATAAAGATTCAGCCGGAAGCTTATGTGGAAACACCAGCCCTTTGA 652 |||||| || | | |||||||||||| |||||||||| ||| || ||||||||||||||| Sbjct 630 GGACAGTGTCTAT-GATAAAGATTCAACCGGAAGCTTCTGTAGAGACACCAGCCCTTTGA 688 Query 653 CGAGGGTTAATGCATCCCTCCCC-AACAAGAGA-GCTGCATGCTCTAGGCGCAAGTTATT 710 ||| |||| ||||| || |||| ||||| | | ||||||| ||||||| | ||| |||| Sbjct 689 AGAGTGTTATTGCAT-CCACCCCTAACAA-AAATGCTGCATTCTCTAGGGGTAAGCTATT 746 Query 711 TAAGACACCAGGTTCTGTTAATTACAGAAGAATGCTTCCATATCTCAAAGATATTCAAGA 770 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 747 TAAGACACCAGGTTCTGTTAATTACAGAAGAATGCTTCCATATCTCAAAGATATTCAAGA 806 Query 771 AGATAATCCTTTTGATCATCAAAAGAACACAGAAGAGGTAACTCCATCATCGATGTT-AA 829 |||||||| || ||| ||||||||||||||| ||||| | | ||||| ||||||| || Sbjct 807 GGATAATCC--TT-ATCCTCAAAAGAACACAGAGGAGGTTATTTCATCACCGATGTTAAA 863 Query 830 -TC----TCTGAGAATGAAGGGACACAGGAAGTGGTGACATCAAATGTTACTAGAGAATC 884 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 864 CTCTGAGTCTGATAATGAAGGGACACAGGAAGTGGTGACATCAAATGTTACTAGAGAATC 923 Query 885 AGATACATGCTCTAATGAAAACGAAGAGCCCCTTTCTTGTGAACGTCTATCTGTATTTCC 944 || |||| ||||| |||||||||||||||||||| ||||||||||| || ||||| || Sbjct 924 AGGTACAAGCTCTGATGAAAACGAAGAGCCCCTTCCTTGTGAACGTGTACCTGTAAATCT 983 Query 945 AGAACAGTCTGATCCTGACAAAGAACAAGAAACACAGATTAAGCATGTCATCTCAGATAC 1004 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 984 AGAACAGTCTGATCCTGACAAGGAACAAGAAACACAGATTAAGCATGTCATCCCAGATAC 1043 Query 1005 TGAAAATAATTTGGGCTCTGAGATCCCATTATCATCTCCTCTTGTTGGTTCAAGAAGTTC 1064 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1044 TGAAAATAATTTGGGCTCTGAGATCCCATTATCATCTCCTCTTGTTGGTTCAAGAAGTTC 1103 Query 1065 AAGTGAGGTTGCTTCATCTGCTTTGCACAACACATTTCTCGACAATTTGGTGGGCGAAGG 1124 |||||| ||| ||||||||| ||||||||||||||| | ||||||||||||||||||| Sbjct 1104 AAGTGAAGTTAATTCATCTGCATTGCACAACACATTTGTAGACAATTTGGTGGGCGAAGA 1163 Query 1125 AAACATGAATGGTGCAGAGATAACAGAAGCAAAAACCAGTGTAGAGCAACTAGAGGCAAA 1184 ||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||| | Sbjct 1164 AAACATGAATGGTGCAGAGATAACAGAAGCAAAGATCAGTGCAGAGGAACTAGAGGCACA 1223 Query 1185 TACATCAGATGCAACAGCTGAACTGATTGACCCTTCTGTTATATTGGCAACTCCTCCCT- 1243 || ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1224 TAGTTCAGATGCAACAGCTGAACTGGTTGACCCTTCTGTTATATTGGCAACTCCTTCCTC 1283 Query 1244 CTATTTCTCCCTCGAAAGGAATTCTGAAAAGAAGTATGAGAGGATGTAGAGGGATATGCT 1303 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1284 CT-TTTCTCCCTCGAAAGGAATTCTGAAAAGAAGTATGAGAGGATGTAGAGGGATATGCT 1342 Query 1304 CTTGTTTGAACTGCTCCTCCTTCCGCCTAAATGCAGAAAGAGCATTTGAATTCTCAAGAA 1363 ||||||||||||||||||||||||| ||| | || ||||||||||||||||||||||||| Sbjct 1343 CTTGTTTGAACTGCTCCTCCTTCCGTCTACACGCCGAAAGAGCATTTGAATTCTCAAGAA 1402 Query 1364 ATCAGTTACAAGATACTGAAGTAATGGTTTTGGATCTAGTTGGAGAAATATCTCATCTCA 1423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1403 ATCAGTTACAAGATACTGAAGTAATGGTTTTGGATCTAGTTGGAGAAATATCTCATCTCA 1462 Query 1424 GGGATATGTTGGAGAAATATAATTCAGCAGATCACAGTGAATCCTACAAAAGTCAGGCTG 1483 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1463 GGGATTTGTTGGAGAAATATAATTCAGCAGATCACAGTGAACCCTACAAAAGTCAGGCTG 1522 Query 1484 GAGAAGCTGCAAAGAGAGCTTGTGAGGCTGCAGAGCTTGCAAAAAGCCGTCTCCATCAGA 1543 | |||||| | |||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 1523 GTGAAGCTTCGAAGAGAGCTTGTGAGGCTGCAGAGCTTGCAAAAAGCCGCCTCCACCAGA 1582 Query 1544 TGAACGATGAT-TATCAAGTTCATTGCAGAATCCCCAACGAACAACGAGCAAGAGTGAAA 1602 |||||||||| | |||| |||| | |||||||||||||||||||||||||||||||||| Sbjct 1583 TGAACGATGACCT-TCAAATTCACTACAGAATCCCCAACGAACAACGAGCAAGAGTGAAA 1641 Query 1603 TTTGCTCATTATGTACACGAGAAGACGAT-G-AAC--C-T---A-CC-AA-A--TTGATC 1649 |||||||||||| |||||||||||||||| | || | | | || || | |||||| Sbjct 1642 TTTGCTCATTATATACACGAGAAGACGATTGTAAAAGCATCCGAACCTAACAAATTGATC 1701 Query 1650 ACTAGATCACCCTGAAGCAACTAGGATGGATGCtttttttAATGTCATTATCTGTCTCCA 1709 | ||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| Sbjct 1702 AGTAGATCACCCTGAAGCAACTAGGATGGGTACTTTTT--AATGTCATTATCTGTCTCCA 1759 Query 1710 GATTATCCAGTTACATGCT-TTTTT-------AATTTTGAAAAGTGAAA-AGGTATTACT 1760 |||||||||||| |||||| ||||| ||||||||||||||||| |||||||||| Sbjct 1760 GATTATCCAGTTTCATGCTCTTTTTTTTTTTTAATTTTGAAAAGTGAAAGAGGTATTACT 1819 Query 1761 AGCTGTCTTTTTCTTAT-GTCACCACCATCCTAAGCAGAGTAGAAGCATAGATCAAATTG 1819 ||||||||||||||| | ||||||| |||||| || ||||||||||||||||||| || Sbjct 1820 AGCTGTCTTTTTCTTTTTGTCACCA---TCCTAAACATAGTAGAAGCATAGATCAAAGTG 1876 Query 1820 CCTTTATACATATAGTCCATGTGACCATATTTATTACAGTAtttttttttCCTGTTTTCa 1879 || |||||||||||| |||||||| ||||||||||||| | |||||||||| | ||| || Sbjct 1877 CCATTATACATATAGACCATGTGATCATATTTATTACACT-TTTTTTTTTC-T-TTT-CA 1932 Query 1880 aaaa-a-aCATCTTGTTCTATGTACATAAACAAAGACTATAAAAGCAAA-CCTCCTGTGA 1936 |||| | ||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 1933 AAAACACACATCTTGTTCTATGTACATACTCAAAGACTATAAAAGCAAAACCTCCTGTGA 1992 Query 1937 TCTCTTAGCAAGTTGCA 1953 ||||||||||||||||| Sbjct 1993 TCTCTTAGCAAGTTGCA 2009 Score = 259 bits (140), Expect = 7e-68 Identities = 212/245 (87%), Gaps = 12/245 (5%) Strand=Plus/Plus Query 283 CAAACGACGCCACCGGATTCCGAATTGTTAAGCAGTGTACCTATCCGTGAAGAGATCAAT 342 |||||||||||||| |||||||||||||| | | ||||| |||||||||||||| Sbjct 367 CAAACGACGCCACCAGATTCCGAATTGTT----A--G---CTATCAGTGAAGAGATCAAT 417 Query 343 GGATCAGCAGTGAAGAAAAGTGATACTAATTTATGTAGCAAATCGGTTCTCCATCCATGT 402 ||||||| |||||| ||||||||||||||| | || || ||||||||||| | ||||||| Sbjct 418 GGATCAGTAGTGAACAAAAGTGATACTAATCTCTGGAGAAAATCGGTTCTTCTTCCATGT 477 Query 403 TCTCGACCTAAGATATTCAAGAACACTGGTTCTTTTAGCTATAAGAGATTGCTTCCATAC 462 ||||||||||||||||||||||| |||||| |||| |||||||||||| ||||||||||| Sbjct 478 TCTCGACCTAAGATATTCAAGAATACTGGTCCTTTCAGCTATAAGAGACTGCTTCCATAC 537 Query 463 TTGAAGCAAGCTGCAGATGATGGAACATCATCA--A-GCCAGTGCTCAAAACCTTTAAGC 519 |||| ||||||| |||||||||||||||||||| | ||| ||||||||| |||| || Sbjct 538 TTGATGCAAGCTTCAGATGATGGAACATCATCATCAAGCCGGTGCTCAAAGTCTTTGAGT 597 Query 520 CAGAA 524 ||||| Sbjct 598 CAGAA 602 Score = 233 bits (126), Expect = 4e-60 Identities = 234/282 (83%), Gaps = 23/282 (8%) Strand=Plus/Plus Query 1 ATGGCGGAATCAAATCAGATCTCTCGGAAGAGGATGCGATTCTCGTCTCCAT-CAGCTAC 59 ||||||||||||||||| ||| |||||||||| ||||||||||||||| | | ||||||| Sbjct 16 ATGGCGGAATCAAATCAAATCCCTCGGAAGAGAATGCGATTCTCGTCTTC-TCCAGCTAC 74 Query 60 AGAGATCCTCACTCTAAGAAAATTACAGAATCAACGAATCG----CA----A-CT----- 105 |||||||||| ||| |||||||| ||| || |||||||||| || | || Sbjct 75 AGAGATCCTCCCTCAAAGAAAATCACAAAACCAACGAATCGCAACCACCGTATCTCAAAG 134 Query 106 --G---CCG--CTCGCCTCCATCAATCACCATCACTCTATGGAAAAATCGATTCGAAAAT 158 | ||| || || ||||||| ||||||||||||||| |||||||||||| ||||| Sbjct 135 CAGAAACCGATCTAGCGTCCATCATTCACCATCACTCTATCAAAAAATCGATTCTAAAAT 194 Query 159 CGTTCGTACGTATCCACGAGTCACCATCAAGGATATTCGTCTCCGACGCATCTTCTCTCC 218 | | |||||||||||||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 195 CACACCTACGTATCCACGAGCCACCATCAAAGATATTCGTCTCCGACGCGTCTTCTCTCC 254 Query 219 AAATCCGATCTCCACCGACTGCGAATGTAACGGCAAAGGTAA 260 || |||||||||||||||||||||||||||| |||||| ||| Sbjct 255 AACTCCGATCTCCACCGACTGCGAATGTAACTGCAAAGATAA 296 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96736450215 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5