BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479890
Length=2956
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23750.1 | Symbols: | Leucine-rich repeat protein kinase fa... 4575 0.0
> AT3G23750.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr3:8558332-8561428 FORWARD LENGTH=2952
Length=2952
Score = 4575 bits (2477), Expect = 0.0
Identities = 2806/2965 (95%), Gaps = 22/2965 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGCT-CTAACGCCTCTCCTCCTTCTCTTCCTCCTCACAACCATAACCTTCTTCAC 59
||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGCTCCT-ACGCCTCTCCTCCTTCTCGTCCTCCTCACAACCATAACCTTCTTCAC 59
Query 60 CACATCCGTCGCTGACGACGGAACAGCAATGCTCGCTTTAGCTAAATCATTTAATCCTCC 119
||| ||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 60 CACCTCCGTCGCTGATGACCAAACAGCAATGCTCGCTTTAGCTAAATCATTCAATCCTCC 119
Query 120 GCCGTCAGATTGGTCAACCACAACATCCACCGATTTCTGCAAATGGTCCGGCGTACGATG 179
|||||||||||||| | | || ||||||||||||||||||||||||||||||||||
Sbjct 120 GCCGTCAGATTGGT---CTTC--CA-CCACCGATTTCTGCAAATGGTCCGGCGTACGATG 173
Query 180 TACCGGCGGTCGTGTTACTATAATCAGTCTCGCTGATAAATCTCTCACCGGATTCATCGC 239
||||||||||||||| || | ||||| ||||||||||||||||||||||||||||||||
Sbjct 174 TACCGGCGGTCGTGTCACAACCATCAGCCTCGCTGATAAATCTCTCACCGGATTCATCGC 233
Query 240 ACCTGAGATCTCGACTCTCTCAGAGCTCAAATCTGTTTCTATTCAACGTAACAAACTCTC 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 234 ACCTGAGATCTCGACTCTTTCAGAGCTCAAATCTGTTTCTATTCAACGTAACAAACTCTC 293
Query 300 TGGTAAAATCCCTTCGTTTGCTAAGCTTTCTTCTCTTCAAGAGATCTATATGGATGATAA 359
|||| |||||||||||||||||| || || |||||||||||||||||||||||||| ||
Sbjct 294 CGGTACAATCCCTTCGTTTGCTAAACTCTCGTCTCTTCAAGAGATCTATATGGATGAGAA 353
Query 360 T-TTCTTCGTCGGAGTTGAAACCGGAGCTTTCGCCGGACTTACTAGTCTTCAGATCTTGA 418
| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 354 TAAT-TTCGTCGGAGTTGAAACCGGAGCTTTCGCCGGACTTACTAGTCTCCAGATCTTGA 412
Query 419 GTTTAAGCGATAATAAGAACATTACTGCTTGGAGTTTTCCTTCGGAGCTTGTTGATTCGA 478
||||||||||||| || ||||||||| |||||||||| || |||||||| || |||||||
Sbjct 413 GTTTAAGCGATAACAACAACATTACTACTTGGAGTTTCCCATCGGAGCTCGTCGATTCGA 472
Query 479 CTTCTCTCACTAAGATTTATCTCGATAACACCAATATCGTCGGAGTTTTGCCTGACATTT 538
|||||||||||| |||||||||||||||||| || |||| ||||||||||||||||||||
Sbjct 473 CTTCTCTCACTACGATTTATCTCGATAACACAAACATCGCCGGAGTTTTGCCTGACATTT 532
Query 539 TCGATTCATTCGCTTCTCTGCAAGATCTCCGGTTATCTTACAACAACATCACCGGAGTTT 598
||||||| || |||||||| ||| ||||||||||||||||||||||||||||||| ||||
Sbjct 533 TCGATTCCTTAGCTTCTCTTCAAAATCTCCGGTTATCTTACAACAACATCACCGGCGTTT 592
Query 599 TACCACCGTCGCTTGCG-AAATCTTCGATTCAGAATCTTTGGATCAACAATCAAGAATTA 657
||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 593 TACCACCGTCGCTTG-GAAAATCTTCGATTCAGAATCTTTGGATCAACAATCAAGACCTA 651
Query 658 GGAATGTCAGGAACGATCGAAG-TGTTATCTAGTATGACGTCGTTGTCACAAGCTTGGCT 716
|||||||||||||||||||||| | || || ||||||||||| |||||||||||||||||
Sbjct 652 GGAATGTCAGGAACGATCGAAGTTCTT-TCGAGTATGACGTCCTTGTCACAAGCTTGGCT 710
Query 717 TCACAAGAATCAGTTCTTTGGACCGATTCCAGATCTCTCCAAGAGCGAGAATCTCTTCGA 776
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TCACAAGAATCACTTCTTTGGACCGATTCCAGATCTCTCCAAGAGCGAGAATCTCTTCGA 770
Query 777 TCTACAGCTCCGGGATAATCAGTTAACCGGAATAGTACCTCCGACGCTTCTTTCACTTGG 836
||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| |
Sbjct 771 TCTACAGCTCCGGGATAATGATTTAACCGGAATAGTACCTCCGACGCTTCTTACACTCGC 830
Query 837 AAGTTTGAAGAACATTTCTCTGGATAACAATAAATTTCAAGGTCCTCTTCCTTTGTTTTC 896
|| |||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 831 TAGCTTGAAGAATATTTCTCTAGATAACAATAAATTTCAAGGACCTCTTCCTTTGTTTTC 890
Query 897 ATCAGAGGTTAAAGTAACAATCGACCACAACGATTTCTGTACTACTAAAGCTGGACAAAC 956
| | ||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 891 ACCGGAGGTTAAAGTAACAATAGACCACAACGTTTTTTGTACTACTAAAGCTGGACAAAG 950
Query 957 CTGTAGTCCTCAGGTGATGACGCTTTTAGCGGTGGCCGGAGGTTTGGGATATCCATCAAT 1016
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 951 CTGTAGTCCTCAGGTGATGACGCTTTTAGCGGTGGCTGGAGGTTTGGGATATCCTTCAAT 1010
Query 1017 GTTGGCTGAGTCTTGGCAAGGTGATGATGCTTGTAGTCGTTGGGCTTATGTTATTTGTGA 1076
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1011 GTTGGCTGAGTCTTGGCAAGGTGATGATGCTTGTAGTGGTTGGGCTTATGTTAGTTGTGA 1070
Query 1077 TTCAGCTGGGAAGAATGTTGTCACGTTGAATCTTGGGAAACATGGATTCGCCGGATTTAT 1136
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1071 TTCAGCTGGGAAGAATGTTGTCACGTTGAATCTTGGGAAACATGGATTCACCGGGTTTAT 1130
Query 1137 ATCTCCGGCGATTGCGAATCTTACTTCATTGAAGAGTATTTACCTTAATGACAACAATTT 1196
||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||||
Sbjct 1131 ATCTCCGGCGATTGCGAATCTTACTTCATTGAAGAGTCTTTATCTTAATGGTAACGATTT 1190
Query 1197 GACTGGTGTTATCCCTAAGGAGTTGACATTTATGACTAGTTTGCAGTTGATTGATGTCTC 1256
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1191 GACTGGTGTTATTCCTAAGGAGTTGACATTTATGACTAGTTTGCAGTTAATTGATGTCTC 1250
Query 1257 GAATAACAATCTTAGAGGGGAGATACCGAAGTTTCCGGCTGCGGTTAAGTTTAATTACAA 1316
||||||||||||||||||||||||||| |||||||||||| |||| ||||||| ||||||
Sbjct 1251 GAATAACAATCTTAGAGGGGAGATACCTAAGTTTCCGGCTACGGTGAAGTTTAGTTACAA 1310
Query 1317 ACCGGGGAACGCGTTGTTGGGAACTAATGGTGGAGATGGTTCAACACCTGGAACtggtgg 1376
||||||||| || ||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1311 ACCGGGGAATGCTTTGTTGGGAACTAATGGTGGAGATGGTTCGAGTCCTGGAACTGGTGG 1370
Query 1377 tgctagtggtggtcctggtgggtcttctggtggtggtggtagtaaggttggtgtgatcgt 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1371 TGCTAGTGGTGGTCCTGGTGGGTCTTCTGGTGGTGGTGGTAGTAAGGTTGGTGTGATTGT 1430
Query 1437 tggtgtgattgtggcggtTTTAGTTTTTCTTGCCATTTTAGGATTTGTGGTTTACAAATT 1496
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1431 TGGTGTGATTGTGGCGGTTTTAGTGTTTCTTGCCATTTTAGGATTTGTGGTTTATAAATT 1490
Query 1497 TGTTATGAAAAGGAAGTATGGGAGGTTTAATAGGACGGATCCTGAGAAGGCTGGGAAGAT 1556
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1491 TGTTATGAAGAGGAAGTATGGGAGGTTTAATAGGACGGATCCTGAGAAGGTTGGGAAGAT 1550
Query 1557 TTTGGTTAGTGATGCTGTGTCTAATGGTGGAAGTGGTGGTGGTGGATATGCTAATGGACA 1616
|||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| ||
Sbjct 1551 TTTGGTTAGTGATGCTGTATCTAATGGTGGTAGTGGTAATGGTGGATATGCTAATGGGCA 1610
Query 1617 TGGAGCTAATAACTTCAATGCGTTGAACAGTCCTAGTAGTGGTGACAATAGTGATCGTTT 1676
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1611 TGGAGCTAATAACTTCAATGCTTTGAATAGTCCTAGTAGTGGTGACAATAGTGATCGTTT 1670
Query 1677 CCTTCTTGAAGGTGGAAGTGTTACCATTCCAATGGAGGTTCTTCGTCAGGTTACGAATAA 1736
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1671 CCTTCTTGAAGGTGGAAGTGTTACCATTCCAATGGAGGTTCTTCGCCAGGTTACAAATAA 1730
Query 1737 TTTCAGTGAGGATAACATATTGGGCAGAGGCGGTTTTGGTGTTGTGTATGCTGGAGAATT 1796
|||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 1731 TTTCAGTGAGGATAACATATTGGGCAGAGGGGGTTTCGGTGTCGTGTATGCTGGAGAATT 1790
Query 1797 ACACGATGGAACAAAGACTGCTGTTAAGAGGATGGAATGTGCAGCAATGGGTAATAAAGG 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 ACACGATGGAACAAAGACTGCTGTTAAGAGGATGGAATGTGCAGCAATGGGTAATAAAGG 1850
Query 1857 AATGAGCGAGTTTCAGGCCGAGATAGCGGTGCTCACTAAGGTCAGGCATAGACATTTGGT 1916
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 1851 AATGAGCGAGTTTCAGGCTGAGATAGCGGTACTTACTAAGGTCAGGCATAGACATTTGGT 1910
Query 1917 CGCCCTATTGGGTTACTGTGTGAATGGGAACGAGAGGTTGCTTGTCTATGAGTACATGCC 1976
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1911 TGCTCTATTGGGTTACTGTGTGAACGGGAACGAGAGGTTGCTTGTCTATGAGTACATGCC 1970
Query 1977 ACAGGGAAATCTTGGACAGCATTTGTTTGAGTGGCGTGAACTCGGATACTCTCCTCTGAC 2036
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||
Sbjct 1971 ACAGGGAAATCTTGGACAGCATTTGTTTGAGTGGAGTGAACTCGGTTACTCTCCTTTGAC 2030
Query 2037 CTGGAAACAGAGAGTGAGCATTGCTTTAGACGTGGCAAGAGGTGTGGAATATCTCCATAG 2096
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 ATGGAAACAGAGAGTGAGCATTGCTTTAGACGTGGCAAGAGGTGTGGAATATCTCCATAG 2090
Query 2097 CTTGGCTCAGCAAAGCTTCATCCACAGAGATTTAAAGCCCTCTAATATCCTTCTAGGAGA 2156
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2091 CTTGGCTCAACAAAGCTTCATCCACAGAGATTTAAAGCCCTCTAACATCCTTCTAGGAGA 2150
Query 2157 TGACATGAGAGCCAAGGTTGCTGATTTCGGATTGGTTAAGAACGCACCAGATGGGAAATA 2216
||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||
Sbjct 2151 TGACATGAGAGCCAAGGTTGCTGATTTTGGATTGGTCAAGAACGCACCTGATGGTAAATA 2210
Query 2217 CTCTGTTGAAACAAGATTAGCAGGCACATTCGGTTATCTAGCACCAGAATACGCTGCTAC 2276
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2211 CTCTGTTGAAACAAGATTAGCAGGCACATTCGGTTATCTAGCACCAGAATACGCCGCTAC 2270
Query 2277 TGGAAGAGTAACGACGAAAGTGGATGTGTATGCATTTGGAGTGGTTCTTATGGAAATACT 2336
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2271 TGGAAGAGTAACGACGAAAGTGGATGTGTATGCATTTGGTGTGGTTCTCATGGAAATACT 2330
Query 2337 AACTGGAAGAAAAGCTTTAGATGATACATTACCAGACGAGAGATCTCATCTAGTCACATG 2396
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2331 AACTGGAAGAAAAGCTTTAGATGATTCATTACCAGACGAGAGATCTCATCTAGTCACATG 2390
Query 2397 GTTCAGAAGAATCCTAATCAACAAAGAAAACATCCCAAAGGCACTAGACCAAACCTTAGA 2456
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2391 GTTCAGAAGAATCCTAATCAACAAAGAAAACATCCCAAAGGCACTCGACCAAACCTTAGA 2450
Query 2457 AGCAGACGAGGAAACAATGGAGAGCATTTACAGAGTTGCTGAGCTAGCAGGACATTGCAC 2516
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 2451 AGCAGACGAGGAAACAATGGAGAGCATTTACAGAGTTGCTGAGCTAGCTGGACACTGCAC 2510
Query 2517 AGCCCGCGAACCTCAACAAAGACCAGACATGGGCCACGCAGTAAACGTGCTAGGTCCACT 2576
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2511 AGCCCGCGAACCTCAACAAAGACCCGACATGGGCCACGCAGTAAACGTGCTAGGTCCACT 2570
Query 2577 TGTAGAGAAGTGGAAACCGTCATGCCAAGAAGAAGAAGAGAGTTTCGGAATCGATGTAAA 2636
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 2571 TGTAGAGAAGTGGAAACCGTCGTGCCAAGAAGAAGAAGAGAGTTTCGGAATCGATGTGAA 2630
Query 2637 CATGAGTTTACCTCAAGCTCTACAAAGATGGCAAAACGAAGGAACATCGTCATCGACAAT 2696
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2631 CATGAGTTTACCTCAAGCTCTACAAAGATGGCAAAACGAAGGAACATCGTCATCAACAAT 2690
Query 2697 GTTCCATGGAGACTTCTCTTATTCTCAGACACAGTCTAGTATTCCTCCGAAGGCCTCTGG 2756
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2691 GTTCCATGGAGACTTCTCTTATTCTCAGACACAGTCTAGTATTCCTCCTAAAGCCTCTGG 2750
Query 2757 CTTTCCTAATACCTTCGATTCGGCTGATGGTCGGTGACACCAAACTTTGTGTCGATCTGT 2816
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2751 CTTTCCTAATACTTTCGATTCAGCTGATGGTCGGTGACACCAAACTTTGTGTCGATCTGT 2810
Query 2817 GACAAATCGATGTTACTAAGttttt--ctttcgttttggctttggcttttt--ctt-ttt 2871
||||||||| ||||||||||||||| ||||| |||||||||||||||||| ||| |||
Sbjct 2811 GACAAATCGTTGTTACTAAGTTTTTTTCTTTCATTTTGGCTTTGGCTTTTTTTCTTCTTT 2870
Query 2872 tAATGACATGATGGTTATATTTATATATTGTAAGCACATATATTTGCGTCTGACCTCTTT 2931
|| || |||||| ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 2871 TA-TGGTATGATGATTATATTTATATATTGTAAGCACATAT-TT-GCGTCTGACCTCTTT 2927
Query 2932 GAGCTTTCGCATTTGTTCATTCTTT 2956
|||| |||||||||||||||||||
Sbjct 2928 GAGCAATCGCATTTGTTCATTCTTT 2952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 146938976047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5