BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479891
Length=686
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23760.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1000 0.0
> AT3G23760.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING:
13 growth stages; BEST Arabidopsis thaliana protein match
is: transferases, transferring glycosyl groups (TAIR:AT4G14100.1);
Has 108 Blast hits to 104 proteins in 19 species: Archae
- 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 90;
Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr3:8562829-8564670
REVERSE LENGTH=751
Length=751
Score = 1000 bits (541), Expect = 0.0
Identities = 645/693 (93%), Gaps = 16/693 (2%)
Strand=Plus/Plus
Query 1 TCAAGCGACATGGTCTCAAAACCACTCCACTCCTTCATCGTTA---TCCTCCTCGTCCTC 57
|||||||||||||||| ||||||| |||| ||||||||||||| |||||||||| |||
Sbjct 22 TCAAGCGACATGGTCTTAAAACCAATCCATTCCTTCATCGTTATCCTCCTCCTCGTTCTC 81
Query 58 TCCGCCGGTGACCAAACAGCCGCCGTTAATGAGCCGGAGCTGGAGATGGAGCCGGTTCCG 117
|||| ||||||| ||| | |||||| || ||||||||| || | |||||| |||||
Sbjct 82 TCCGTCGGTGACAAAATATCCGCCGGTACTGAGCCGGA----GA-A-GGAGCCAGTTCCT 135
Query 118 GCGGCATGGCCGGAGCAGTTTCACGCGTTGATGTTGATGAACAAATCAGGGGCCTTGGAG 177
|||| ||||||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 136 GCGGTATGGCCGGAGCAGTTCCACGCGTTGATGTTGATGAACAAATCAGGGTCATTGGAG 195
Query 178 ATTGTGGATCTTTGGTACGACTGGGTCAATGGACGTAACTTTAACATCATTCAGAAGCAA 237
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 196 ATTGTGGATCTTTGGTATGACTGGGTCAATGGACGTAACTTTAACATCATTCAGAAGCAG 255
Query 238 CTTGGTAAACTTACTTATGACCTCGAATGGAACAATGGCACTTCTTTTTACTACACTCTC 297
|||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 256 CTTGGTAAGCTCACTTATGACCTCGAATGGAACAATGGCACTTCTTTCTACTACACTCTT 315
Query 298 GACGCTTCTAGAACTTGTCGCACCGTTCACTTT-GAGGTTGGAATCTTGAAG-CCAAATT 355
|||||||||| |||||||||||||||||| ||| ||||||||||||||| || |||||||
Sbjct 316 GACGCTTCTAAAACTTGTCGCACCGTTCA-TTTCGAGGTTGGAATCTTG-AGACCAAATT 373
Query 356 GGCTAGATGGAGCAAAGTATTTGGGTCAACGACATGTAAATGGTTTTTTATGCAACGTAT 415
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 374 GGCTAGATGGAGCAAAGTATATGGGTCAACGACATGTAAATGGGTTTTTATGCAACGTAT 433
Query 416 GGGAGAAAGTTGAGTTCTTATGGTACTATGAAGATGTTGTCACCAAGAGACCTGTACAAT 475
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 434 GGGAAAAAGTTGAGTTCTTATGGTACTATGAAGATGTTGTCACCAAGAGACCTGTACAGT 493
Query 476 GGATCTTCTATACAGGTAGAGAAGCTCATGTGATGACATTTGATGTTGGAGCTGTCCTAG 535
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 494 GGATCTTCTATACAGGTAGAGAAGCTCATGTGATGACATTTGAAGTTGGAGCTGTCCTAG 553
Query 536 AAGACGAGAAATGGCAGGCTCCTGTCTATTGTTTCCACAATGAGAAGAAAGAAGTACAAT 595
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 554 AAGACGAGAAATGGCAGGCTCCTGTATATTGTTTCCACAATGAGAAGAAAGAAGTACAAT 613
Query 596 GAGTAATTGATTTTGTGTTTCATTAT-T-TGTAGAGTTTTGGGTATCTTTTAAATATATA 653
|||||| ||||||||||||||||| | | |||||||||||||| ||||||| ||||||||
Sbjct 614 GAGTAAATGATTTTGTGTTTCATT-TCTATGTAGAGTTTTGGGCATCTTTTGAATATATA 672
Query 654 TCAACCGTTCAATGAGGAGGTCATTTTCGTTTT 686
|||||||||||||||||||||||||||||||||
Sbjct 673 TCAACCGTTCAATGAGGAGGTCATTTTCGTTTT 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33204771167
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5