BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479892
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23770.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 2261 0.0
> AT3G23770.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr3:8565494-8567496 FORWARD LENGTH=1793
Length=1793
Score = 2261 bits (1224), Expect = 0.0
Identities = 1438/1541 (93%), Gaps = 15/1541 (1%)
Strand=Plus/Plus
Query 1 ATCACAAATCACACTCACCACTCTC-C-TCTCAACATTTTCCTCCAAC-AAAACAAAAAA 57
||| ||||||||||||||||||||| | |||||||||||| ||||||| |||||||||||
Sbjct 1 ATCCCAAATCACACTCACCACTCTCTCTTCTCAACATTTTTCTCCAACAAAAACAAAAAA 60
Query 58 CAATGTCTCCTTTTGCTCTGTTCCTCTTCACTTTCCTTGTCCTTTCAAGTTCATGTTTCT 117
||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||| ||
Sbjct 61 CAATGACTCCTTTTGCTCTGTTCCTCTTCACTCTCCTTGCCCTTTCAAGTTCATGTTGCT 120
Query 118 CTGCGATTGGTTCC-CAAAACAACAGAACAGTGTTAGCACTTGCAAGCAGAATTGGAATC 176
|||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 CTGCCATTGG-TCCACAAAACAACAGAACAGTGTTAGCACTTGCAAGCAGAATTGGGATC 179
Query 177 AACTACGGAAAATTAGGCAACAATCTTCCTTCTCCTTACCAATCAATCAACCTCATCAAA 236
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 AACTATGGAAAATTAGGCAACAATCTTCCTTTTCCTTACCAATCAATCAACCTCATCAAA 239
Query 237 ACCCTTAAAGCTGGCCACGTCAAGCTCTACGATGCTGATCCAGAAACCCTCAAA-CTCCT 295
||| ||||||| ||||||||||||||||| || || |||||||||||||| ||| |||||
Sbjct 240 ACCATTAAAGCAGGCCACGTCAAGCTCTATGACGCCGATCCAGAAACCCT-AAAGCTCCT 298
Query 296 CTCTAAGACCAATCTTTACGTCACCATCATGGTCCCTAACAACCAGATCATCTCAATAGG 355
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTCTACGACCAATCTTTACGTCACCATCATGGTCCCTAACAACCAGATCATCTCAATAGG 358
Query 356 CGCTGATCAAGCCGCTGCTGATAACTGGGTCGCCACCAATGTCCTTCCATACT-ACCCGC 414
||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||||
Sbjct 359 TGCTGATCAAGCCGCTGCTGATAACTGGGTCGCCACTAATGTCCTTCC-TTTTCACCCGC 417
Query 415 AAACCCGAATCCGGTTCGTCCTCGTTGGCAACGAAATCCTCAGCTACAATACCGATCAAG 474
||||||||||||| |||||||||||||||||||| |||||||||||| | | |||||||
Sbjct 418 AAACCCGAATCCGATTCGTCCTCGTTGGCAACGAGGTCCTCAGCTACAGTTCTGATCAAG 477
Query 475 ACAAGCAAATATGGGCCAATCTTGTCCCTGCCATGCGTAAAGTTGTGAATTCTCTTAGAG 534
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 478 ACAAGCAAATATGGGCTAATCTTGTCCCTGCCATGCGTAAAGTAGTGAACTCTCTTAGAG 537
Query 535 CTCGTGGGATTCACAACATCAAAGTTGGGACTCCTCTTGCCATGGACGCTCTTCGATCGA 594
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 538 CTCGTGGAATTCACAACATCAAAGTTGGGACACCTCTTGCCATGGACGCTCTTCGTTCGA 597
Query 595 GTTTTCCTCCGTCGAGTGGTACATTCCGGGAAGATATCGCGGTTCCGGTGATGTTACCGT 654
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 598 GTTTTCCTCCTTCGAGTGGTACATTCCGGGAAGATATCGCTGTTCCGGTGATGTTACCGT 657
Query 655 TGTTGAAGTTTCTCAATGGAACAAACTCTTTCTTCTTCCTTGATGTTTACCCTTACTTCC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TGTTGAAGTTTCTCAATGGAACAAACTCTTTCTTCTTCCTTGATGTTTACCCTTACTTCC 717
Query 715 CTTGGTCCACTGATCCGGTTAACAACCATTTGGATTTCGCTCT-TTTCGAATCGAATTCG 773
||||||| |||||||||||||| |||||||||||||| ||||| ||| |||||||||||
Sbjct 718 CTTGGTCTACTGATCCGGTTAATAACCATTTGGATTTTGCTCTGTTT-GAATCGAATTCT 776
Query 774 ACTTATACCGATCCGCAAACCGGTTTGGTTTACACCAATCTTCTAGACCAGATGCTCGAT 833
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACTTATACCGATCCTCAAACCGGTTTGGTTTACACCAATCTTCTAGACCAGATGCTCGAT 836
Query 834 TCGGTTATCTATGCGATGACCAAGCTCGGTTATCCGAACATTCC-TCTCGCAATCTCCGA 892
|||||||||| ||||||||||||||||||||||||||| || | |||||||||||| ||
Sbjct 837 TCGGTTATCTTTGCGATGACCAAGCTCGGTTATCCGAATAT-CAGTCTCGCAATCTCTGA 895
Query 893 AACCGGGTGGCCTAATTCCGGTGATATCCATGAAATCGGAGCTAATATTCTCAACGCCGC 952
|||||||||||||||| ||||||||||||||||| ||||||||||||| |||| |||||
Sbjct 896 AACCGGGTGGCCTAATGACGGTGATATCCATGAAACCGGAGCTAATATTGTCAATGCCGC 955
Query 953 GACGTATAACCGGAATTTGATCAAGAAGATGACTGCTAACCCGCCACTCGGTACACCAGC 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GACGTATAACCGGAATTTGATCAAGAAGATGACTGCTAACCCGCCACTCGGTACACCAGC 1015
Query 1013 TAGGCGTGGTTCACCTATACCGACGTTTTTGTTCTCCTTGTTCAATGAGAACCAGAAACC 1072
|||||| ||| ||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1016 TAGGCGCGGTGCACCTATACCGACGTTTTTGTTCTCTTTGTTCAATGAAAACCAGAAACC 1075
Query 1073 CGGTTCTGGAACAGAGAGGCATTGGGGAATTTTGAATCCGGACGGTACACCGATCTACGA 1132
|||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 1076 CGGTTCGGGAACAGAGAGACATTGGGGAATTTTGAACCCTGACGGTACACCGATCTACGA 1135
Query 1133 CATCGACTTCAGCGGTACAAGATCAGTTTCCAG-TTTTGGTACGTTGCCTAAACCAAGTA 1191
|||||| |||||||||| |||||| |||| | | ||||| | ||||||||||||| ||||
Sbjct 1136 CATCGATTTCAGCGGTAGAAGATC-GTTTTCTGGTTTTGATTCGTTGCCTAAACCGAGTA 1194
Query 1192 ACAATGTTCCCTTCAAGGGCAACGTGTGGTGTGTGGCGGTTGATGGGGCCGATGAGGCAG 1251
|||||||||| || || || || || ||||||||||||||||||||||||||||||||||
Sbjct 1195 ACAATGTTCCGTTTAAAGGTAATGTATGGTGTGTGGCGGTTGATGGGGCCGATGAGGCAG 1254
Query 1252 AGTTAGGGCTGGCACTAAACTTTGCTTGCGGAAGAAACAATGAAACCTGTGCAGCGTTGG 1311
|| |||||| ||| || ||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 1255 AGCTAGGGCAGGCGCTTAACTTTGCTTGCGGAAGAAGCAATGCAACATGTGCAGCGTTGG 1314
Query 1312 CGCCAGGGGGAGAATGCTATGCACCGGTAACGGTTACTTGGCATGCAAGCTATGCGTTTA 1371
| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1315 CTCCAGGAGGAGAATGCTATGCACCGGTGACGGTTACTTGGCATGCAAGCTATGCGTTTA 1374
Query 1372 GCTCATACTGGGCTCAATTCCGGAACCAAAGCTCTCAATGCTACTTCAATGGTTTGGCGC 1431
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1375 GCTCGTACTGGGCTCAGTTCCGGAACCAAAGCTCTCAATGCTACTTCAATGGTTTGGCTC 1434
Query 1432 GTGAGACCACGATCAACCCTGGAAATGAGCGTTGCAAATTTCCTAGCGTTACGCTGTGAG 1491
|||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1435 GTGAGACCACGACCAACCCTGGAAATGAGCGTTGCAAGTTTCCTAGCGTTACATTGTGAG 1494
Query 1492 GCTGCCTCGTGACACAGGCGTGTGGAGAAAAGGATCAAAAG 1532
||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1495 GCTGCCTCGTGACTCAGGCGTGTGGAGGAAAGGATCAAAAG 1535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75602020770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5