BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479896
Length=1310
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23840.1 | Symbols: | HXXXD-type acyl-transferase family pr... 1971 0.0
> AT3G23840.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr3:8611126-8612690 FORWARD LENGTH=1445
Length=1445
Score = 1971 bits (1067), Expect = 0.0
Identities = 1231/1312 (94%), Gaps = 4/1312 (0%)
Strand=Plus/Plus
Query 1 ATCATCTTTGCCAATATTTCTCTTCGATCTTTTGTCTCATAACCATGGGTCGAGTTCAAG 60
|||||||||| |||||||||||| | ||||||||||||||| ||||||||| ||||||||
Sbjct 8 ATCATCTTTGTCAATATTTCTCTACCATCTTTTGTCTCATAGCCATGGGTCTAGTTCAAG 67
Query 61 AAGAGGGAAGCGGTCCGGTTCATGGCTTCCGCTTATCGACTGTGAGTGCGTCTCAACCCT 120
|||||||||||||||| ||||||||||| || ||||| || ||||||||||| | || |
Sbjct 68 AAGAGGGAAGCGGTCCTGTTCATGGCTTTCGGTTATCAACCGTGAGTGCGTCCCTGCCGT 127
Query 121 CAGAGACCGATACGACCCACGAACCCACCGGTTTAGACCTCGCCATGAAGCTTCACTACC 180
||||||| | |||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 128 CAGAGACAGGTACGACCCACGAGCCCACCGGTTTAGACCTCGCCATGAAGCTCCACTACC 187
Query 181 TTAAGGCGGTTTACATTTACTCGGCCGAGACAGCACGTGACTTGACCGTGATGCACGTGA 240
| ||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||
Sbjct 188 TAAAGGCGGTTTACATTTACTCGGCCGGGACAGCACGTGACTTGACTGTGATGGACGTGA 247
Query 241 AGACGCCTTTGTTTTCAGTGTTCGACCAGATCCCATGTATCATTGGCAGGTTCAGGCGAC 300
|| |||||||||||||||||||| |||||||||| || ||||||||||||||||||||||
Sbjct 248 AGGCGCCTTTGTTTTCAGTGTTCTACCAGATCCCTTGCATCATTGGCAGGTTCAGGCGAC 307
Query 301 ACGATTCGGGACGTCCGTACATAAAGTGTAACGACTGTGGCACACGTTTCGTGGAAAGTC 360
| || ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct 308 ATGAATCGGGACGTCCGTACCTAAAGTGCAACGACTGTGGCACACGTTTCGTGGAGAGTC 367
Query 361 ATTGTGATCTCACTGTGGAGGAGTGGCTCCATGTACCGGACCGGTCCGTTGATGAGGCTC 420
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 368 ATTGTGATCTCACTGTGGAGGAGTGGCTCCGTGTACCGGACCGGTCCGTTGATGAGTCTT 427
Query 421 TGGTTTACCATCAACCAGTTGGACCAGAATTGGCATTCTCTCCTTTGCTCTATATTCAGA 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 428 TGGTTTACCATCAACCAGTTGGACCAGATTTGGCATTCTCTCCTTTGCTCTATATTCAGA 487
Query 481 TGACCCGGTTTAGCTGCGGTGGATTAGCTTTGGGCTTAAGCTGGGCTCATGCCATGGGAG 540
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 488 TGACCCGGTTTAGCTGCGGTGGATTAGCTTTGGGCTTAAGCTGGGCTCATATCATGGGAG 547
Query 541 ATCCATTCTCTCTTTCTCATTTCTTCAACTTATGGGCTCAAGCCTTTGCTGGTGAGAAGA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 548 ATCCATTCTCTCTTTCTCATTTCTTCAACTTATGGGCTCAAGCCTTTGCTGGTGGGAAGA 607
Query 601 TCTACTCCCCCAAAACCTCTGAT-ACAGAAAGAGTCTGTCAAAACCCGAACTCAACGGTC 659
|||||| |||||||||||||| | ||||| |||| || ||||||||||| |||||| ||
Sbjct 608 TCTACTGCCCCAAAACCTCTG-TCACAGAGAGAGACTTTCAAAACCCGACCTCAACATTC 666
Query 660 AAAAAACCCAATTCAATCAAACGGGTTGACCCGGTTGGAGATCTCTGGGTCGCTCCGAAT 719
|||||||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 667 AAAAAACCGGATTCAGTCAAACAGGTTGACCTGGTTGGAGATCTCTGGGTCGCTCCGAAT 726
Query 720 AACAGCAAAATGACAACATTCTCCTTCAATTTAACGGTTAACGATCTCAAATCACATTTT 779
||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 727 AACAGCAAAATGACAACATTCTCCTTCAATTTAACGGTTAACGATTTAAAAACACATTTT 786
Query 780 CCGGCGAACGGAGACGACGAATTCAAGATTCTCGCTGGAATTATATGGAAATGTGTTGCG 839
|||| ||||||||||| ||||||| |||||||| ||||||| ||||||||||||||||||
Sbjct 787 CCGGTGAACGGAGACGGCGAATTCGAGATTCTCACTGGAATCATATGGAAATGTGTTGCG 846
Query 840 ACGGCGAGGGGAGAATCAGCTCCGGTGACGATTACGGTTATCAGATTGGATCCGAAGGAG 899
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 847 ACGGTGAGGGGAGAATCAGCTCCGGTGACGATTACGGTTATCAGATCGGATCCGAAGAAG 906
Query 900 TTGAAGCCTAGAGCGGTGAGAAATGGTCAGATGATAAGTTCCGTTCACGTCGATTTCTCG 959
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 907 TTGAAGCCTAGAGCGGTGAGAAATGGTCAGATGATAAGTTCCATTCACGTCGATTTCTCG 966
Query 960 GTGGCGGAGGCGAGTCTGGAGGAGATTGTGAAAGCAATCGGTGAAGCGAGAGATGAGAGG 1019
||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 967 GTGGCGGAGGCGAGTTTGGAGGAGATTGTGAAATCGATCGGTGAAGCGAAAGATGAGAGG 1026
Query 1020 TTTGGGATCGATGATATTGTTGATGATGTTTCGGATTTTATTGTTTACGGAGCGAATTTG 1079
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 GTTGTGATCGATGAGATTGTTGATGATGTTTCGGATTTTATTGTTTACGGAGCGAATTTA 1086
Query 1080 ACGTTTGTGGATATGAGTGAAGTTGATTTTTATGAGGCGAAAGTTATGGG-AAAGTCACC 1138
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 1087 ACGTTTGTGGATATGAGTGAAGTTGATTTTTATGAGGCGAAAGTTATGGGGAAA-TCGCC 1145
Query 1139 GGAATCGGTTTATTGTAATGTTCAGGGGATTGGTGACGACGGAGCTGTGGTGGTTTTACC 1198
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1146 GGAATCGGTTTATTGTAATGTTCAGGGGATTGGGGACGACGGAGCAGTGGTGGTTTTACC 1205
Query 1199 GGGGGTTGTGGAGGAGGAGAGAGTTGTGACGGTGACGTTACCGGAGGATGAGATTGAGAA 1258
||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||
Sbjct 1206 GGGGGTTGTGGAGGAGGAGAGGGTTGTGACGGTGACATTACCGGTGGATGAGATTGAGAA 1265
Query 1259 GGTGAAATGGGAAATGAAGAAGTGTGGTTTGATCACGCCGTTAGTTTAACGG 1310
||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1266 GGTGAAATGGGAAATGAAGAAATGTGGTTTGATCACGCCGTTAGTTTAACGG 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64457499780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5