BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479907
Length=2127
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24210.1 | Symbols: | Ankyrin repeat family protein | chr3:... 3127 0.0
AT3G04470.1 | Symbols: | Ankyrin repeat family protein | chr3:... 196 6e-49
> AT3G24210.1 | Symbols: | Ankyrin repeat family protein | chr3:8753474-8756065
REVERSE LENGTH=2329
Length=2329
Score = 3127 bits (1693), Expect = 0.0
Identities = 1958/2082 (94%), Gaps = 33/2082 (2%)
Strand=Plus/Plus
Query 58 aaaGTGAATGCTGCAAAAC-AAAGCTTGAGAAGATTGAGTAAGACGTCATTCATTATCTT 116
||||||||||||||||| | ||| ||||||||||||| |||||| |||||||||||||||
Sbjct 135 AAAGTGAATGCTGCAAAGCAAAAACTTGAGAAGATTGTGTAAGAAGTCATTCATTATCTT 194
Query 117 TCTTGCAGAGAAAGTTAGAAGTTGAAAAAACACAAAGGTGAGAACTTTTTGATCTGAAGA 176
|||||||||||||||||||||||||||| ||| ||| || | |||||||||||||||
Sbjct 195 TCTTGCAGAGAAAGTTAGAAGTTGAAAAGACA-AAA----AGGA-TTTTTGATCTGAAGA 248
Query 177 TTCTGATTTTGGATCTCAAATGGAGAACGTTGATGTTTCCAAGTACAGACACAGCTCTGT 236
||||||||| |||||||||||||||||||||||||| || ||||||| ||||||||||||
Sbjct 249 TTCTGATTTGGGATCTCAAATGGAGAACGTTGATGTGTCTAAGTACATACACAGCTCTGT 308
Query 237 GCACAGAGCTGTCGCTTCTAAAGACTATGCTGGTCTCAAG-GCAATTCTGTTTTCTCTTC 295
||||| |||||| |||||||||||||||| ||||||| || ||||| |||| ||||||||
Sbjct 309 GCACAAAGCTGTTGCTTCTAAAGACTATGTTGGTCTC-AGAGCAATACTGTCTTCTCTTC 367
Query 296 CAAAGCCTAAAGATCCTTGTGAGATTCAAACAGAAGCAGCTTCATTAGCCGAGGAAGCAA 355
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 368 CAAAGCCTAAAGATCCATGTGAGATTCAAACAGAAGCAGCTTCATTATCCGAGGAAGCAA 427
Query 356 AATCCGATGA-CATTTCGGCTGTGATTGATCGAAGAGACGTCCCAAGCCGCGACACGCCA 414
|||||||| | |||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 428 AATCCGAT-ACCATTTCAGCTGTGATTGATAGAAGAGACGTCCCAAGCCGCGACACGCCG 486
Query 415 CTACATTTAGCTGTGAAGCTCTGTGATTCAACATCAGTAGAAATGCTGATGGTTGCTGGA 474
|||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 487 CTACATCTAGCGGTGAAGCTCTGTGATTCAACATCAGTAGAAATGCTAATGGTTGCTGGA 546
Query 475 GCTGATTGGACTTTGCAGAACGAGGACGGTTGGAACGCGTTGCAAGAAGCTGTTTGCAGT 534
||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 547 GCTGACTGGACTTTGCAAAACGAAGACGGTTGGAACGCGTTGCAGGAAGCTGTTTGCAGT 606
Query 535 AGACAAGAGGCGATAGCGATGATTATAGTCCGGCATTATCAGCCTCTT-GCTTGGGCTAA 593
||||||||||||||||||||||||||||| ||||| ||||||||| || |||||||||||
Sbjct 607 AGACAAGAGGCGATAGCGATGATTATAGTTCGGCACTATCAGCCT-TTAGCTTGGGCTAA 665
Query 594 ATGGTGTAGGAGACTACCTCGTTTGATAGCTACAATGAGTAAGATGAAAGATTTTTACTT 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 ATGGTGTAGGAGACTACCTCGTTTGATAGCTACAATGAGTAAGATGAAAGATTTTTACTT 725
Query 654 GGAGATGAGTTTTCATTTTGAGAGCTCTGTTGTGCCTTTTGTATCTAAGGTTGCGCCGTC 713
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 726 GGAGATGAGTTTTCATTTTGAGAGCTCTGTTGTTCCTTTTGTATCTAAGGTTGCACCGTC 785
Query 714 TGATACTTACAAGGTTTGGAAAGTGGGATCGAATTTGAGAGCGGATATGACTATGGCTGG 773
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 TGATACTTATAAGGTTTGGAAAGTGGGATCGAATTTGAGAGCGGATATGACTATGGCTGG 845
Query 774 TTTCGAT-GGTTTCAAGATTCAACGGTCTGATCAGAGTATTTTGTTTCTTGGTGATGGGT 832
||| ||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 846 TTTTGATGGGTTT-AAGATTCAACGGTCTGATCAAAGTATATTGTTTCTTGGTGATGGGT 904
Query 833 CAGAGGATGGTGAAGTTGCTCGTGGATCGCTTTATATGGTGAATCATAAGGATAAAGAAG 892
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 905 CAGAGGATGGTGAAGTTGCTCGTGGATCGCTTTACATGGTGAATCATAAGGATAAAGAAG 964
Query 893 TGGTTAATGCTTTGGATGGTGCTTGTGGAGTTCCATCAGAAGAAGAAGTTAGGAAAGAAG 952
|| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TGATGAATGCGTTGGATGGTGCTTGTGGAGTTCCATCAGAAGAAGAAGTTAGGAAAGAAG 1024
Query 953 TGGCTGCAATGTGTAAGAGCAATATCTTTAGACCCGGGATTGATGTGACACAAGCTGTTC 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1025 TGGCTGCAATGTGTAAGAGCAATATCTTTAGACCCGGGATTGATGTGACACAAGCGGTTT 1084
Query 1013 TATCGCCGCAAACAAATTGGAGGAGACAGGAGAAGAGTGAGATGGTTGGTCCTTGGAAAG 1072
|||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1085 TATCTCCGCAGACTAATTGGAGGAGGCAGGAGAAGAGTGAGATGGTTGGTCCTTGGAAAG 1144
Query 1073 CTAAAGTCTATGAGATGAACAATGTTGTTGTTAGTATTAAGTCTAGAAAGGTTCCTGGTT 1132
|||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1145 CTAAGGTCTATGAGATGAACAATGTTGTTGTTAGTGTTAAGTCAAGAAAGGTTCCTGGTT 1204
Query 1133 CATCGGCTGTAGAAGGAGGCGATGATGATCTCTGCGATGTTCTAACAGATGAAGAGCAAA 1192
||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1205 CATTGGCTGTAGAAGGAGGCGATGATGATATCTGCGATGTTTTAACAGATGAAGAGCAAA 1264
Query 1193 AGCAACTAGAGGCTGCTCTTAAGCTGGATTTACCAGACTTCCCAAATGTCAATGGTGAGA 1252
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 AGCAACTAGAGGATGCTCTTAAGCTGGATTTACCAGACTTCCCAAATGTCAATGGTGAGA 1324
Query 1253 ATGGTTTCATTGATGATGATCATCATCAGCAAGATCATATAGAGGCCAACAAGAAATCGG 1312
||||||||| | || | |||||||||| |||||||| | ||||||||||||||| | |
Sbjct 1325 ATGGTTTCA-T--TG-T--TCATCATCAGGAAGATCATGTTGAGGCCAACAAGAAAGCAG 1378
Query 1313 AAAAGAAAGGGTGGTTAGGAGGTTGGAGATCAAAGAAAGAGACTAAACAAGAGAAGCAAA 1372
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1379 AGAAGAAAGGGTGGTTAGGAGGTTGGAG---AAAGAAAGAGACTAAACAAGAGAAGCAGA 1435
Query 1373 TTCAATACGCGCCTCCGAGAAGCTCTCTTTGTGTGAATGAGAAAGTAAGTAATCTATTGG 1432
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TTCAATACGCGCCACCGAGAAGCTCTCTTTGTGTGAATGAGAAAGTAAGTAATCTATTGG 1495
Query 1433 GAGAGTCTAATCAGATAAAACCAGGAAGACACTCAGTAGATAATGAGCATTATAGGAAAC 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 GAGAGTCTAATCAGATAAAACCAGGAAGACACTCAGTAGATAATGAGCATTATAGGAAAC 1555
Query 1493 CAAAAGCATTGGTATCTGATAAGACTCGCCACGAAAGCGAATACAAGAAAGGGTTACGTC 1552
||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1556 CAAAAGCATTGGTCTCTGACAAGACTCGCCACGAAAGCGAATATAAGAAAGGGCTACGTC 1615
Query 1553 CTGTTCTTTGGTTATCTCCAAACTTCCCATTACAAACAGAAGAGCTT-CTTCCTTTACTT 1611
||||||||||| |||||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct 1616 CTGTTCTTTGGCTATCTCCAAACTTCCCATTACAAACAGAGGAG-TTGCTTCCTTTACTT 1674
Query 1612 GACATACTTGCAAACAAAGTTAAGGCGATTCGTCGTCTCAGAGAACTTCTCACCACAAAA 1671
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1675 GACATACTTGCAAACAAAGTTAAGGCGATTCGTCGTCTTAGAGAACTTCTTACCACAAAA 1734
Query 1672 CTTCCTTCTGGAACATTTCCGGTCAAGGTTGCTATTCCAGTGGTACCTACAATAAAAGTG 1731
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 CTTCCCTCTGGAACATTTCCGGTCAAGGTTGCTATTCCAGTGGTACCTACAATAAAAGTG 1794
Query 1732 CTTGTTACATTCACAAAGTTTGAAGAAATTGAGCCTTTGGATGAGTTTAAGACGCCTCTG 1791
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1795 CTTGTTACATTCACAAAGTTTGAAGAAATTGAGCCTGTAGATGAGTTTAAGACGCCTCTC 1854
Query 1792 TCGAGCCCGACTGCTTCTGGCTATGAGAGTCCAGCTGCTGCAACAACTGAGTTCAGCAAC 1851
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1855 TCGAGCCCGACTTCTTCTGGCTATGAGAGTCCAGCTGCTGCAACAACTGACTTCACCAAC 1914
Query 1852 TCATC---GTCCTC---GTGGTTTCGTCGGTCTAGATCAAACAAAGATGGTGCGAGTAGT 1905
||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1915 TCATCATCGTCCTCCTCGTGGTTTCGTCGGTCTAGATCAAACAAAGATGGTGGGAGTAGT 1974
Query 1906 AAGTCCAAAACATTACAAGACCCATTTGCTATCCCCACTGGTTATACGTGGGTCACTCTT 1965
||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||| ||||
Sbjct 1975 AAGTCAAAAACATTACAAGACCCATTTGCTATACCCACAGGTTATACTTGGGTCAGTCTT 2034
Query 1966 GAATCaaagaaaaggaaacaaaaaaagggtggtaaaaaagCAGAACAAGATAGCTAATCA 2025
||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 2035 GAATCAAAGAAAAGGAAACCAAAAAAGGGTGGTAAAAAAACAGAACAAGTTAGCTAACCA 2094
Query 2026 CTTCCAACTCTTGAGAACATAATACTAATCTACGCAGGTCTTCTTCATGAGATTCGTGAA 2085
|||| ||||||||||||||||||||||| |||| ||||| |||||||||||||| |||||
Sbjct 2095 CTTC-AACTCTTGAGAACATAATACTAACCTACACAGGTTTTCTTCATGAGATTTGTGAA 2153
Query 2086 AAGACATTGAAGAAAGGGTTAGAAAGGCATAGAAATTCTGAT 2127
||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2154 AAGACATTGAAGAAAGGGTGAGAAAGGCATAAAAATTCTGAT 2195
Score = 95.3 bits (51), Expect = 2e-18
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 1 TCTGATCTGGATTTAGATCACAAGAATCTCTCTTTCAACTTCTCTCCTATGACaaaa 57
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 16 TCTGATCTGGAATTAGATCACAAGAATCTCTCTTTCAACTTCTCTCCTATGACGAAA 72
> AT3G04470.1 | Symbols: | Ankyrin repeat family protein | chr3:1189640-1192638
REVERSE LENGTH=2909
Length=2909
Score = 196 bits (106), Expect = 6e-49
Identities = 292/380 (77%), Gaps = 20/380 (5%)
Strand=Plus/Plus
Query 461 TGATGGT-TGCTGGAGCTGATTGGACTTTGCAGAACGAGGACGGTTGGAACGCGTTGCAA 519
|||| || |||||| || ||||||| | | ||||||||| | ||||||| ||||| |||
Sbjct 1045 TGAT-GTCTGCTGGTGCCGATTGGAGTCTACAGAACGAGAATGGTTGGAGTGCGTTACAA 1103
Query 520 GAAGCTGTTTGCAGTAGACAAGAGGCGATAGCGATGATTATAGTC-CGGCATTATCAGCC 578
||||| ||||||| ||| ||||||| || || ||||| || | | |||||||| |||||
Sbjct 1104 GAAGCGGTTTGCACAAGAGAAGAGGCCATCGCCATGATAATTG-CTCGGCATTACCAGCC 1162
Query 579 TCTTGCTTGGGCTAAATGGTGTAGGAGACTACCTCGTTTGATAGC-T-A-CAATGAGTAA 635
|||||||||||||||||||||||||||||| ||||| | || || | | || | |
Sbjct 1163 TCTTGCTTGGGCTAAATGGTGTAGGAGACTTCCTCGGATCATTGCGTCAGCA-TC--TCG 1219
Query 636 GATGAAAGATTTTTACTTGGAGATGAGTTTTCATTTTGAGAGCTCTGTTGTGCCTTTTGT 695
||| ||||||||| ||||||| | |||||||||||||||||| || | || ||| |
Sbjct 1220 GATCCGTGATTTTTACATGGAGATCACTTTTCATTTTGAGAGCTCGGTCATTCCGTTTAT 1279
Query 696 ATCTAAGG-TTGCGCCGTCTGATACTTACAAGGTT-TGGAAA-GTGGGATCGAATTTGAG 752
| | |||| || || |||||||||| || | |||||| |||| || ||| | |
Sbjct 1280 -TGGCCGCATTGCTCCTTCCGATACTTACA-GGATATGGAAACGTGGT-TCAAATCTCCG 1336
Query 753 AGCGGATATGACTATGGCTGGTTTCGATGG-TTTCAAGATTCAACGGTCTGATCAGAGTA 811
|| ||||||||| | |||||||| ||||| ||| || || |||||||| ||||| | |
Sbjct 1337 TGCTGATATGACTCTTGCTGGTTTTGATGGGTTTAAA-ATCCAACGGTCAGATCAAAC-A 1394
Query 812 TTT-TGTTTCTTGGTGATGG 830
||| | ||||| || |||||
Sbjct 1395 TTTCTCTTTCTAGGGGATGG 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105471345045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5