BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479917
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24150.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1764 0.0
> AT3G24150.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G32295.1);
Has 50 Blast hits to 50 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 41; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:8724159-8725912
REVERSE LENGTH=1472
Length=1472
Score = 1764 bits (955), Expect = 0.0
Identities = 1171/1270 (92%), Gaps = 36/1270 (3%)
Strand=Plus/Plus
Query 172 TAGAAATTGAACCGATTAGTTTGATGAGCGAGTGACTCGTTGCTTCGATTTTGTAGCTGA 231
|||||||||||||||||||||||||||| |||||||| ||| |||||| |||||||||||
Sbjct 233 TAGAAATTGAACCGATTAGTTTGATGAGTGAGTGACTTGTTACTTCGA-TTTGTAGCTGA 291
Query 232 GTGTGTCACTGGTTTAGCGTCTGAGGAAGAAGTGTGTGAAGAGAAAAATGCCGAGGCCTG 291
|||||||||| | | | || || |||||| | ||| |||||||||||||| |
Sbjct 292 GTGTGTCACT-GCTCA-AGTGTG-TGAAGAA------G--GAG-AAAATGCCGAGGCCAG 339
Query 292 GACCTAGACCTTACGAGTGTGTGAAACGAGTTTGGCATAGCGATCGTCATCAACCTATTC 351
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 340 GACCAAGACCTTACGAGTGTGTGAAACGAGCTTGGCATAGCGATCGTCATCAACCTATTC 399
Query 352 GTGGTTCAATTATTCGCCAGATTTTCAGACTCGCCATGGAAGCACATAGCGCTGCGACGA 411
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 400 GTGGTTCGATTATTCGCCAGATTTTCAGACTCGCAATGGAAGCACATAGCGCAGCGACGA 459
Query 412 GGAAGAACAAAGAATGGCAGGAGAAATTGCCTGTGGTTGTGTTAAAAGCTGAAGAAATCA 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 GGAAGAACAAAGAATGGCAGGAGAAATTGCCTGTGGTTGTGTTAAAAGCTGAAGAAATCA 519
Query 472 TGTACTCTAAAGCCAATTCCGAGGAAGAGTATACAGATGCTGATACTATGTGGAATAGAG 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 TGTACTCTAAAGCCAATTCCGAGGAAGAGTATACAGATGCTGATACTATGTGGAATAGAG 579
Query 532 TAAATGATGCCATTGATACAGTTATTAAGA-GAGATGAGAGCACAGAAACTGGTCCTCTG 590
|||||||||||||||||||| |||||| || |||||||||| |||||||||||||||||
Sbjct 580 TAAATGATGCCATTGATACAATTATTA-GAAGAGATGAGAGTACAGAAACTGGTCCTCTT 638
Query 591 TTACCTCCTTGTGTTGAAGCTGCTCTTAATTTGGGATGTATTGCTGTAAGAGCTTCAAGA 650
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 TTGCCTCCATGTGTTGAAGCTGCTCTTAATTTGGGATGTATTGCTGTAAGAGCTTCAAGA 698
Query 651 AGCCAACGACATAGTAGTGTAAGGACTTATCTCGGTCC-AAAACTCCAGGAACCGGTTTC 709
||||||||||||||||| | ||||||||| |||||||| |||| || |||||||||||||
Sbjct 699 AGCCAACGACATAGTAGCGGAAGGACTTACCTCGGTCCTAAAATTC-AGGAACCGGTTTC 757
Query 710 TGCGTCGACTAATGAGCCA-CTGTACCATCATGAATATCATCAGCAAGCTCAACAATCAT 768
|||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||
Sbjct 758 TGCGTCGACTAATGAGCCGTCT-TACCATCATGAATATCGTCAGCAAGCTCAACAATCAT 816
Query 769 CCACCAAACCAAGCCAGACAGCTCAAGCTGCAATCCATGTGGATGTGCTTGATAACAGCA 828
| ||||||||||||||||||| |||||||||| ||| ||| ||||| |||||||||||||
Sbjct 817 CAACCAAACCAAGCCAGACAGTTCAAGCTGCAGTCCCTGTTGATGTACTTGATAACAGCA 876
Query 829 ACAAGCGTGTAGCTACTCCTCGTGGTTACCCGTTTCTGCATGAATCCATGCAGATGCATC 888
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 877 ACAAGCGTGTAGCTACTCCTCGCGGTTACCCGTTTCTTCATGAATCCATGCAGATGCATC 936
Query 889 AAAAGCCATTGGCAATAAGACAAGGAACTAGCACTGCTCCTGCGCCTACTACAGCTCTAT 948
|||||||||||||||| |||||||||||| | | |||||| || || | ||
Sbjct 937 AAAAGCCATTGGCAATTAGACAAGGAACT-G----G-TCCTGCTTCTGCT-C--CTG--- 984
Query 949 CTCCAGCTCCAGTCAACTTGGGTTCGGTCTATCCTTTGTACTACGGAGGTAATAATCAGA 1008
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
Sbjct 985 CTCCAGCTCCAGTCAACTTGGGTTCGGTCTATCCTTTGTATTACGAAGGTAATAATCAAA 1044
Query 1009 CTCAGCAAGCCGACATGCCTTTCAGAGTCCCTGAAGCTCCCATAATCATTGGCATGCCTA 1068
| |||||||| |||||| |||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1045 CGCAGCAAGCTGACATGTCTTTTAGAGTCCCTGAAGCGCCCATAATCATTGGCATGCCTA 1104
Query 1069 TTGGTATAAAGCCCCCAGAAGAAGCAACAGAGAGGGTCTGTGATTTATCATTGAGGCTCG 1128
|||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1105 TTGGTATAAAGCCCTCAGAAGAAGCAACTGAGAGGGTCTGTGATTTATCCTTGAGGCTCG 1164
Query 1129 GTATATCTTCAGAACCGTCTACAAGAATAGATGTCGGGTCGAGTCGGGCTTACCCGGGAA 1188
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1165 GTATATCTTCAGAACCGTCTACAAGAATAGATGTCGGGTCTAGTCGGGCTTACCCGGGAA 1224
Query 1189 GAAACCAAGAAGAGTTATGTTTATTCTCAGAGGTAAAGAAGAATGATAGGTTTGACTGGT 1248
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1225 GAAACCAAGAAGAGTTATGTTTATTCGCAGAGGTAAAGAAGAATGATAGGTTTGAATGGT 1284
Query 1249 TTTCAAATAGTGAAGGTCAGAATTCAGATTCGAGAGTTAAAAAGCACAAAACTTTGTGTG 1308
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1285 TTTCAAATAGTGAAGGTCAGAATTCAGATTCGAGAGTTAAAAAGCACAGAACTTTGTGTG 1344
Query 1309 GAGACTTCCTTTAGGACTTGCGTTACTCAAATCTTGTAAAAGCTTCAGGTTTATTGGTTT 1368
||||||||||||||||||||| ||| | | |||||||||||||||||||||||||||
Sbjct 1345 GAGACTTCCTTTAGGACTTGC-TTAGT----TGTTGTAAAAGCTTCAGGTTTATTGGTTT 1399
Query 1369 AATATTTTATTGACTCTACTAGTCTTAGCTTTAGCTTCAAATTTTAAAATAAAAATCCGT 1428
| ||||||||||||||||||||||||||| || ||||||| ||||| |||||| |||| |
Sbjct 1400 ACTATTTTATTGACTCTACTAGTCTTAGCGTTCGCTTCAAGTTTTATAATAAAGATCCAT 1459
Query 1429 GAATTGATCT 1438
| ||||||||
Sbjct 1460 GGATTGATCT 1469
Score = 187 bits (101), Expect = 2e-46
Identities = 121/130 (93%), Gaps = 4/130 (3%)
Strand=Plus/Plus
Query 44 GGAGATGTGACCGGTATGAGCTCAAGTAGACGAAATCTCCAAACGATTCATAGCTTCAAA 103
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GGAGATGTGACCGGTATGAGCTCAAGTAGACGAAATCTCCAAACGATTCAGAGCTTCAAA 120
Query 104 GCTTCAGATCTGTTTCCTTGGATCGGTTAAAAACGATTTTTTAAAGTT-ACTTTTCCTCT 162
||||||||||||||||||||||||||||||||| || |||| || ||| | ||||| | |
Sbjct 121 GCTTCAGATCTGTTTCCTTGGATCGGTTAAAAA-GAGTTTT-AAGGTTGATTTTTCTT-T 177
Query 163 CCACACCATT 172
||||||||||
Sbjct 178 CCACACCATT 187
Score = 75.0 bits (40), Expect = 2e-12
Identities = 42/43 (98%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1 ATTTCCAGAAACGGCAACGATGGAGACAACAATCGGAGATTCT 43
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATTTCCAGAAGCGGCAACGATGGAGACAACAATCGGAGATTCT 43
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70883169540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5