BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479922
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24110.1 | Symbols: | Calcium-binding EF-hand family protei... 743 0.0
> AT3G24110.1 | Symbols: | Calcium-binding EF-hand family protein
| chr3:8704429-8705413 REVERSE LENGTH=690
Length=690
Score = 743 bits (402), Expect = 0.0
Identities = 473/508 (93%), Gaps = 2/508 (0%)
Strand=Plus/Plus
Query 1 ATGCTTTGCTGTTGTGTTAACTCGGAGAACAACAGGAAGTATGCAGAGCTGGACGCGAAG 60
||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1 ATGCTTTGCTGCTGTGTTAACTCGGAGAACAACAAGAAGTATGCAGAGCTGGATGCGAAG 60
Query 61 CTTGCACGGAAAATGGTGGAGAGCCGGAGGATTTATCCGGGACACCGGCGTTTAAAGTCC 120
||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||
Sbjct 61 CTTGCACGGAAAATGGTGGAGAGCCGGAGTATTTATCCGGGACACAGGAGTTTAAAGTCT 120
Query 121 ATGGATTCAATAATCATGAAGTTTCCTAAGCTAAGAGAAGGATTAAGAAACATCAGAAGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGGATTCAATAATCATGAAGTTTCCTAAGCTAAGAGAAGGATTAAGAAACATCAGAAGC 180
Query 181 GTTTTCGAATCCTTCGATAGTGATAAAAACGGGACAATCGATATCGAGGAGCTGAAGAAA 240
||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 GTTTTCGAATCATACGATAATGATACAAACGGGACAATCGATATCGAGGAGCTGAAGAAA 240
Query 241 TGCTTAGAGGAACTAAACCT-ATGTTTGTCAGAGGAAGAAGTGAAAGGTTTATATGGATG 299
|| |||||||||||||| || | |||| || || ||||||||||||||||||||| | ||
Sbjct 241 TGTTTAGAGGAACTAAAGCTGA-GTTTATCGGATGAAGAAGTGAAAGGTTTATATAGTTG 299
Query 300 GTGTGATGTTGATGGAAGCAAAGGGATACAATTCAATGAGTTTATAGTTCTTCTCTGTCT 359
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 GTGTGACGTTGATGGAAGCAAAGGGATACAATTCAATGAGTTTATAGTCCTTCTCTGTCT 359
Query 360 CATCTATCTTCTATCAAAACCTTCCTCTGAATCCAACACGGAATCAAAAGAGATGGGTCC 419
|||||||||||| | ||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 360 CATCTATCTTCTGGCGAAACCTTCCTCTGAATCCAGCACGGAATCGAGAGAGATGGGTCC 419
Query 420 AAAGTTGGTTGAATCAATATTTGATCCGATAGTAGAAGTGTTCTTGTTTTTAGACAAAGA 479
|||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 420 AAAGTTGGTTGAGTCTATATTTGATCCAATAGTAGAAGTGTTCTTGTTTTTGGACAAAGA 479
Query 480 TGGTAAAGGAAAATTAAACAAAGCTGAT 507
|||||||| ||||||||||| ||||||
Sbjct 480 CGGTAAAGGGAAATTAAACAAGGCTGAT 507
Score = 217 bits (117), Expect = 1e-55
Identities = 131/137 (96%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 521 CTTCACATGTTACCAACATGAGATTTGAAGAAATGGATTGGGGAAGAAAAGGGAAAGTGG 580
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 CTTCACATGTCACCAACATGAGATTTGAAGAAATGGATTGGGGAAGAAAAGGGAAAGTGG 613
Query 581 GTTTTAGAGAGTTTCTATTTGCTTTCATGAGTTGGGTTGGTCTTGATGATGCAGA--A-G 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 614 GTTTTAGAGAGTTTCTATTTGCTTTCATGAGTTGGGTTGGTCTTGATGATGCAGATGATG 673
Query 638 ATTATATGACCAGCTAA 654
||| ||||| |||||||
Sbjct 674 ATTTTATGAGCAGCTAA 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5