BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479923
Length=2197
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24090.1 | Symbols: | glutamine-fructose-6-phosphate transa... 2222 0.0
> AT3G24090.1 | Symbols: | glutamine-fructose-6-phosphate transaminase
(isomerizing)s;sugar binding;transaminases | chr3:8697838-8700971
REVERSE LENGTH=2034
Length=2034
Score = 2222 bits (1203), Expect = 0.0
Identities = 1335/1400 (95%), Gaps = 4/1400 (0%)
Strand=Plus/Plus
Query 800 GAGCTAGATCAAGGCAAGAGCAATAGTCATGTTTTTCAAGATGCTCACTTTCTTTCTAAG 859
|||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 637 GAGCTAGATCAAGGTGAGAGCAATAGTCATGTTTTCCAAGATGCTCACTTTCTATCTAAG 696
Query 860 AATGACCATCCCAAGGAATTTTTCCTATCAAGTGATCCGCATGCTCTTGTTGAGCACACA 919
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 697 AATGACCATCCCAAGGAGTTTTTCCTATCAAGTGATCCACATGCTCTTGTTGAGCACACA 756
Query 920 AAGAAAGTTTTGGTGATTGAAGATGGCGAAGTTGTTC-ACCTCAAGGATGGAGGTGTGA- 977
|||||||||||||||||||||||||||||||||| || | ||||||||||||||||| |
Sbjct 757 AAGAAAGTTTTGGTGATTGAAGATGGCGAAGTTG-TCAATCTCAAGGATGGAGGTGT-AT 814
Query 978 CTATACTTAAGTCTGAAAACGAGAGGGGAAGGCGTAATGGTATATCGAGAATTGCTTCAG 1037
| |||||||||| |||||| |||||||||||| |||||||| |||||||| ||||||||
Sbjct 815 CAATACTTAAGTTTGAAAATGAGAGGGGAAGGTGTAATGGTTTATCGAGACCTGCTTCAG 874
Query 1038 TGGAACGTGCATTATCTGTTTTAGAAATGGAGGTGGAGCAAATAAACAAGGGAAAATATG 1097
|||||||||| ||||||||| |||| |||||||| |||||||||| ||||||||||||||
Sbjct 875 TGGAACGTGCCTTATCTGTTCTAGAGATGGAGGTAGAGCAAATAAGCAAGGGAAAATATG 934
Query 1098 ATCATTACATGCAAAAAGAAATCCACGAGCAGCCGGAATCTTTAACTACCACAATGAGAG 1157
|||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 935 ATCATTACATGCAAAAGGAAATCCACGAGCAGCCAGAATCTTTAACTACTACAATGAGAG 994
Query 1158 GCCGACTTATACGCGGTGGTTCACGCAAAACAAAAACAGTCCTCCTAGGTGGGTTGAAAG 1217
||||||||||||||||||||||||| ||||| ||||| |||||| |||||||| ||||||
Sbjct 995 GCCGACTTATACGCGGTGGTTCACGTAAAACGAAAACCGTCCTCTTAGGTGGGCTGAAAG 1054
Query 1218 ATCACTTAAAGACCATAAGACGCAGCCGGCGTATAGTTTTTATTGGGTGTGGGACAAGTT 1277
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1055 ATCACCTAAAGACCATAAGACGCAGCCGGCGTATAGTTTTTATTGGATGTGGGACAAGTT 1114
Query 1278 ACAACGCCGCTCTTGCATCAAGACCTATCCTTGAAGAACTCTCTGGTATACCAGTCAGCA 1337
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1115 ACAATGCCGCTCTTGCATCAAGACCTATCCTTGAAGAACTCTCTGGTATACCAGTCAGTA 1174
Query 1338 TGGAGATTGCTAGTGATCTCTGGGACCGGCAAGGTCCAATATACAGAGAAGATACTGCGG 1397
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1175 TGGAGATTGCTAGTGATCTATGGGACCGGCAAGGTCCAATATACAGAGAAGATACCGCGG 1234
Query 1398 TGTTTGTGAGTCAGTCTGGTGAAACCGCAGATACACTACTTGCTTTGGACTATGCTCGGG 1457
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1235 TGTTTGTGAGTCAGTCTGGTGAAACTGCAGATACACTACTTGCTTTGGACTATGCTCGAG 1294
Query 1458 AAAACGGTGCATTATGTGTCGGCATAACTAACACCGTTGGGAGCTCGATAGCTAGAAAAA 1517
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1295 AAAACGGTGCATTATGTGTCGGCATAACTAACACCGTTGGGAGCTCCATAGCTAGAAAAA 1354
Query 1518 CACACTGTGGTGTTCATATAAACGCAGGAGCTGAGATTGGTGTCGCAAGTACAAAGGCAT 1577
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 CACACTGTGGTGTCCATATAAACGCAGGAGCTGAGATTGGTGTCGCAAGTACAAAGGCAT 1414
Query 1578 ACACAAGTCAGATTGTGGTAATGGTTATGCTAGCTTTAGCAATTGGAAGTGACACAATCT 1637
| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1415 ATACAAGTCAGATTGTGGTAATGGTAATGCTAGCTTTAGCAATAGGAAGTGACACAATCT 1474
Query 1638 CCAGCCAAAAGAGACGGGAAGCTATAATCGATGGACTACTTGATTTGCCGTATAAGGTTA 1697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 CCAGCCAAAAGAGACGGGAAGCTATAATCGATGGACTACTTGATTTGCCGTATAAGGTTA 1534
Query 1698 AGGAAGTACTAAAGCTAGACGATGAAATGAAAGATCTCGCACAACTTTTGATAGATGAGC 1757
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1535 AGGAAGTACTAAAGCTAGACGATGAAATGAAAGATCTCGCGCAACTCTTGATAGACGAGC 1594
Query 1758 AGTCACTGCTTGTGTTTGGCAGAGGATACAACTACGCAACAGCTTTAGAAGGAGCATTGA 1817
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1595 AGTCACTGCTAGTGTTTGGCAGAGGATACAACTACGCAACAGCTTTAGAAGGAGCATTAA 1654
Query 1818 AAGTAAAAGAAGTAGCACTTATGCATAGTGAAGGAATACTAGCAGGAGAAATGAAACATG 1877
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1655 AAGTAAAAGAAGTAGCACTTATGCACAGTGAAGGAATACTTGCAGGAGAAATGAAACATG 1714
Query 1878 GACCTTTAGCTTTAGTTGATGAGAATCTTCCCATTGCTGTGATCGCCACTCGTGATGCTT 1937
||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 1715 GACCTTTAGCTTTGGTTGATGAGAATCTCCCCATAGCTGTGATTGCCACTCGTGATGCTT 1774
Query 1938 GTTTCAGCAAACAACAGTCTGTGATTCAGCAACTTCACGCACGCAAAGGGAGATTAATAG 1997
||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1775 GTTTCAGTAAACAACAATCTGTGATTCAGCAACTTCACGCACGCAAAGGGAGACTAATAG 1834
Query 1998 TAATGTGCTCAAAAGGTGATGCTGCATCAGTAAGCTCGAGTGGATCTTGTCGAGCAATCG 2057
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 1835 TAATGTGCTCAAAAGGTGATGCTGCATCGGTAAGCTCGAGTGGTTCTTGTCGAGCTATCG 1894
Query 2058 AAGTACCTCAAGTTGAAGATTGTTTACAACCTGTTGTTAATATAGTGCCATTACAGTTGT 2117
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1895 AAGTTCCTCAAGTTGAAGATTGTTTACAACCTGTTATTAATATAGTGCCATTACAGTTGT 1954
Query 2118 TGGCTTATCATCTGACTGTTTTGAGAGGTCACAACGTTGATCAACCGAGGAATCTGGCGA 2177
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1955 TGGCTTATCATCTGACTGTTTTGAGAGGTCACAATGTTGATCAACCGAGGAATCTGGCAA 2014
Query 2178 AGAGTGTGACTACTCAATAG 2197
||||||||||||||||||||
Sbjct 2015 AGAGTGTGACTACTCAATAG 2034
Score = 913 bits (494), Expect = 0.0
Identities = 595/643 (93%), Gaps = 9/643 (1%)
Strand=Plus/Plus
Query 5 ATGTGTGGAATCTTCGCGTATTTGAATTTTCACGCTAACAAAGAGAGACGATACATTCTC 64
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTGTGGAATCTTCGCGTATCTGAATTTTCACGCGAACAAAGAGAGACGATACATTCTC 60
Query 65 GA-GATTCTCTTCAATGGTCTTCGTCGTCTTGAATACAGAGGCTATGATTCAGCTGGAAT 123
|| | |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 61 GATG-TTCTCTTCAATGGTCTTCGTCGTCTTGAATACAGAGGCTACGATTCTGCTGGAAT 119
Query 124 CGCAATTGATGATTCTTCAACAATCTCTTCCCCTCCTCTTGTGTTTCGTCAAGCAGGAAA 183
||| |||||| ||||||| | | ||||| ||||||| ||||||||||||||||||||
Sbjct 120 CGCCATTGATAATTCTTC-TC-CT-TCTTCTTCTCCTCTCGTGTTTCGTCAAGCAGGAAA 176
Query 184 CATTGAATCACTCGTTAATTCTGTAAACGAAGAGATTACGAATACAGATTT-AAACTTAG 242
|||||||||||| |||||||| || |||||||||||||||||||| ||||| || | |||
Sbjct 177 CATTGAATCACTTGTTAATTCCGTTAACGAAGAGATTACGAATACGGATTTGAATC-TAG 235
Query 243 ATGAAGTTTTCTACTTTCATGCTGGAATTGCACATACTAGATGGGCTACACATGGTGAGC 302
| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 236 ACGAAGTTTTCTACTTTCATGCTGGAATTGCACATACGAGGTGGGCTACTCATGGTGAGC 295
Query 303 CAGCTCCAAGGAATAGTCATCCTCAATCTTCTGGTCCTGGAGATGATTTTTTGGTGGTTC 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CAGCTCCAAGGAATAGTCATCCTCAATCTTCTGGTCCTGGAGATGATTTTTTGGTGGTTC 355
Query 363 ATAATGGTGTTATCACTAATTATGAGGTGTTGAAAGAAACTTTAGTGAGGCATGGATTTA 422
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 356 ATAATGGTGTTATCACTAACTATGAGGTATTGAAAGAAACGTTAGTGAGGCATGGATTTA 415
Query 423 CTTTTGATTCGGATACAGATACTGAGGTTATACCAAAGCTTGCTAAATTTGTTTTTGACA 482
||||||| ||||| ||||||||||| || || || ||||||||||| |||||||||||||
Sbjct 416 CTTTTGAATCGGACACAGATACTGAAGTAATTCCTAAGCTTGCTAAGTTTGTTTTTGACA 475
Query 483 AAGCTAATGAAGAAGGTGAACAGACTGTT-CAATTTTGTGAAGTTGTCTTTGAAGTGATG 541
|||||||||||||||||| ||| |||||| || || ||||||||||| ||||||||||||
Sbjct 476 AAGCTAATGAAGAAGGTGGACAAACTGTTACA-TTCTGTGAAGTTGTGTTTGAAGTGATG 534
Query 542 AGGCATCTTGAAGGAGCTTATGCTCTTATATTTAAAAGCTGGCATTACCCGAACGAGTTG 601
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 535 AGGCATCTTGAAGGAGCTTATGCTCTTATATTTAAAAGCTGGCATTATCCGAATGAGTTA 594
Query 602 ATTGCGTGCAAGCTTGGTAGCCCGTTGCTTTTAGGTGTTAAAG 644
|||||||||||||||||||| || |||||||||||||||||||
Sbjct 595 ATTGCGTGCAAGCTTGGTAGTCCATTGCTTTTAGGTGTTAAAG 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108985383195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5