BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479927
Length=476
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24068.1 | Symbols: | Plant self-incompatibility protein S1... 616 8e-176
AT3G24065.1 | Symbols: | Plant self-incompatibility protein S1... 357 5e-98
> AT3G24068.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:8692191-8692676 REVERSE LENGTH=486
Length=486
Score = 616 bits (333), Expect = 8e-176
Identities = 432/478 (90%), Gaps = 13/478 (3%)
Strand=Plus/Plus
Query 1 AAACAAAAGATGATATCCACCAAAGCATATAGACTCTTCCTGGTCTCCTTAGCCTTAGCC 60
|||||||||||||||||||||||||||||||| |||||||||| | | | ||||||||
Sbjct 1 AAACAAAAGATGATATCCACCAAAGCATATAGCCTCTTCCTGG--T-C-T--CCTTAGCC 54
Query 61 TTGATCACAACCTCTTCGTTATCTTTCGCGGCTCAAGTCTTCACCATAGAGATAAGCAAC 120
|| | || ||||||| ||||||||| ||||||| ||||||||||||| |||||||||||
Sbjct 55 TT-A--ACGACCTCTTGGTTATCTTTGGCGGCTCCAGTCTTCACCATAAAGATAAGCAAC 111
Query 121 ACCCTTGCACCTGGCTCTAATCCAATCTCCATAAGCTGCATCTCACCCCAAAGAGATACT 180
| ||||||||||||||||||||| ||||||||||| |||||||| || |||| ||||| |
Sbjct 112 AACCTTGCACCTGGCTCTAATCCGATCTCCATAAGTTGCATCTCGCCACAAAAAGATATT 171
Query 181 TGGTCTAC-GGTGTTATCTCGAGGTGGGAGTTTCGATTTTCACTTTGACACAAACCAATC 239
|||||| | | || |||||| |||| ||||| ||| ||| ||||||||||||| |||
Sbjct 172 TGGTCTGCTGTTG-TATCTCAAGGTCAGAGTTCCGAGTTTGGGTTTGACACAAACCGATC 230
Query 240 AGTTAAATGGAGTTGCGACATCTCATCGGGAGCCAGAAAGAGTAGTTTCGTCATCTTTGA 299
||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 231 AGTTAAATGGACTTGTGACATCTCATCGGGAGCAAGAAAGAGTAGTTTCGTCATCTTTGA 290
Query 300 TCTTAATAGAGACAAATCAAGATGCAAAACCGATGGTTTATGTCTATGGCAAATCAATCC 359
|||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 291 TCTTAATAGAGACAAATCAAGATGCAGATCCGATGGTTTTTGTCTATGGCAAATCAATCC 350
Query 360 TGATGGT-TTCTACCTATATGTCGCTTCTATTCAAAAATACCAAAAGCAATTCAATTGGT 418
||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 351 TGATGGTCTT-TACCTATATGTCGCTTCTATTCAGAAATACCAAAAGCAATTCAATTGGT 409
Query 419 GATTCACCAAACAATATGCATTGTGTTATTGTATCGTTGAGTCGTATAATATAATATA 476
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 410 GATACACCAAACAATATGCATTGTGTTATTGTATCGTTCAGTCGTATAATATAATATA 467
> AT3G24065.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:8690737-8691144 REVERSE LENGTH=408
Length=408
Score = 357 bits (193), Expect = 5e-98
Identities = 350/422 (83%), Gaps = 25/422 (6%)
Strand=Plus/Plus
Query 10 ATGATATCCACCAAAGCATATAGACTCTTCCTGGTCTCCTTAGCCTTAGCCTTGATCACA 69
||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 1 ATGATATCCACCAAAGCATATAGCCTCTTCCTTGTCTCCTTAGCCTTAGCCTT--T---- 54
Query 70 ACCTCTTCGTTATCTTTCGCGGCTCAAGTCTTCACCATAGAGATAAGCAACACCCTTGCA 129
|| ||||||||||||||| |||||| |||||||||| || || ||| ||||| |||||||
Sbjct 55 ACTTCTTCGTTATCTTTCACGGCTCCAGTCTTCACCGTAAAGGTAACCAACAACCTTGCA 114
Query 130 CCTGGCTCTAATCCAATCTCCATAAGCTGCATCTCACCCCAAA-GAGATACTTGGTCTAC 188
| || |||| |||| || ||||||| |||| ||| ||||| |||||||| |||| |
Sbjct 115 CTTGACTCTCATCCGTTCACCATAAGATGCACCTC-GTCCAAATTAGATACTTCGTCT-C 172
Query 189 -GGTGTTATCTCGAGGTGGGAGTTTCGAT-TTTCA-CTTTGACACAAACCAATCAGTTAA 245
|||||||| |||||||| || || || | || | |||||||| |||||||| ||
Sbjct 173 AGGTGTTATTTCGAGGTGAGACTTACG-TGCTT-ATGTTTGACACCGACCAATCAACTAG 230
Query 246 ATGGAGTTGCG--A-CATCTCATC-GGGAGCCAGAAA-GAGTAGTTTCGTCATCTTTGAT 300
||||| ||||| | | ||||||| | |||| ||| || | ||||||| ||||||||
Sbjct 231 ATGGAATTGCGTCATCTTCTCATCATCG-GCCA-AAATGACTCCTTTCGTCCTCTTTGAT 288
Query 301 CTTAATAGAGACAAATCAAGATGCAAAACCGATGGTT-TATGTCTATGGCAAATCAATCC 359
|| ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct 289 CTCGATAGAGACAAATCAAGATGCAAACCCGATGGTTCT-TGTCTATGGCAAATCAATCC 347
Query 360 TGATGGTTTCTACCTATATGTCGCTTCTATTCAAAAATACCAAAAGCAAT-TCAATTGGT 418
|||||||||||||||||| |||||||||||||| |||||||||||||||| | ||| |||
Sbjct 348 TGATGGTTTCTACCTATACGTCGCTTCTATTCATAAATACCAAAAGCAATATAAAT-GGT 406
Query 419 GA 420
||
Sbjct 407 GA 408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22655600297
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5