BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479928
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24065.1 | Symbols: | Plant self-incompatibility protein S1... 536 5e-152
AT3G24068.1 | Symbols: | Plant self-incompatibility protein S1... 398 3e-110
> AT3G24065.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:8690737-8691144 REVERSE LENGTH=408
Length=408
Score = 536 bits (290), Expect = 5e-152
Identities = 366/402 (91%), Gaps = 7/402 (2%)
Strand=Plus/Plus
Query 1 ATGATATCCACCAAAGCATATAGCCTCTTCATTGTCTCCTTAGCCTTAGCCTTTACCTCT 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1 ATGATATCCACCAAAGCATATAGCCTCTTCCTTGTCTCCTTAGCCTTAGCCTTTACTTCT 60
Query 61 TCATTATCTTTCACGGCTCCAGTCTTCACCGTAAAGATAACCAACAACCTTGCACTTGGC 120
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 61 TCGTTATCTTTCACGGCTCCAGTCTTCACCGTAAAGGTAACCAACAACCTTGCACTTGAC 120
Query 121 TCTAAACCGATCATCATAAGCTGCATCTCGTCCAAATTAGATACTTCGTCTCAGGTGTTA 180
||| | ||| ||| |||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCATCCGTTCACCATAAGATGCACCTCGTCCAAATTAGATACTTCGTCTCAGGTGTTA 180
Query 181 TTTCGAGGTGAGCCTTTTGGG-TTGATGTTTAACACAGACCAATCAGTTAAATGGAGTTG 239
|||||||||||| ||| | | || |||||| |||| ||||||||| || ||||| |||
Sbjct 181 TTTCGAGGTGAGACTTACGTGCTT-ATGTTTGACACCGACCAATCAACTAGATGGAATTG 239
Query 240 CGACATCTTCTCATCATCGGGAGCCAAAAAGACTAGTTTCGTCCTCTTTGATCTTGATAG 299
|| ||||||||||||||||| |||||| |||| |||||||||||||||||| |||||
Sbjct 240 CGTCATCTTCTCATCATCGG---CCAAAATGACTCCTTTCGTCCTCTTTGATCTCGATAG 296
Query 300 AGACAAATCAAGATGCAGACCCGATGGTT-TATGTCTATGGCAAATCAATCCTGATGGTT 358
||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 297 AGACAAATCAAGATGCAAACCCGATGGTTCT-TGTCTATGGCAAATCAATCCTGATGGTT 355
Query 359 TCTACCTATATGTCGCTTCTATTCAAAAATACCAAAAGCAAT 400
|||||||||| |||||||||||||| ||||||||||||||||
Sbjct 356 TCTACCTATACGTCGCTTCTATTCATAAATACCAAAAGCAAT 397
> AT3G24068.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:8692191-8692676 REVERSE LENGTH=486
Length=486
Score = 398 bits (215), Expect = 3e-110
Identities = 346/406 (85%), Gaps = 21/406 (5%)
Strand=Plus/Plus
Query 1 ATGATATCCACCAAAGCATATAGCCTCTTCATTGTCTCCTTAGCCTTAGCCTTTACCTCT 60
|||||||||||||||||||||||||||||| | ||||||||||||||| | ||||||
Sbjct 10 ATGATATCCACCAAAGCATATAGCCTCTTCCTGGTCTCCTTAGCCTTA-AC--GACCTCT 66
Query 61 TCATTATCTTTCACGGCTCCAGTCTTCACCGTAAAGATAACCAACAACCTTGCACTTGGC 120
| |||||||| ||||||||||||||||| ||||||||| |||||||||||||| ||||
Sbjct 67 TGGTTATCTTTGGCGGCTCCAGTCTTCACCATAAAGATAAGCAACAACCTTGCACCTGGC 126
Query 121 TCTAAACCGATCAT-CATAAGCTGCATCTCGTCCA-AATTAGATACTTCGTCT-CAGGTG 177
||||| |||||| | |||||| ||||||||| ||| || ||||| || |||| | | ||
Sbjct 127 TCTAATCCGATC-TCCATAAGTTGCATCTCG-CCACAAAAAGATATTTGGTCTGCTGTTG 184
Query 178 TTATTTCGAGGTGAGCCTTTTG-GGTTGATGTTTAACACAGACCAATCAGTTAAATGGAG 236
||| || |||| || || | | ||| |||| ||||| ||| ||||||||||||||
Sbjct 185 -TATCTCAAGGTCAGAGTTCCGAGTTTG-GGTTTGACACAAACCGATCAGTTAAATGGAC 242
Query 237 TTGCGACATCTTCTCATCATCGGGAGCCAA-AAAGACTAGTTTCGTCCTCTTTGATCTTG 295
||| |||| || |||||||||| ||| ||||| |||||||||| |||||||||||
Sbjct 243 TTGTGACA-----TC-TCATCGGGAG-CAAGAAAGAGTAGTTTCGTCATCTTTGATCTTA 295
Query 296 ATAGAGACAAATCAAGATGCAGACCCGATGGTTTATGTCTATGGCAAATCAATCCTGATG 355
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 296 ATAGAGACAAATCAAGATGCAGATCCGATGGTTTTTGTCTATGGCAAATCAATCCTGATG 355
Query 356 GT-TTCTACCTATATGTCGCTTCTATTCAAAAATACCAAAAGCAAT 400
|| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 356 GTCTT-TACCTATATGTCGCTTCTATTCAGAAATACCAAAAGCAAT 400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18900673624
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5