BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479928 Length=400 Score E Sequences producing significant alignments: (Bits) Value AT3G24065.1 | Symbols: | Plant self-incompatibility protein S1... 536 5e-152 AT3G24068.1 | Symbols: | Plant self-incompatibility protein S1... 398 3e-110 > AT3G24065.1 | Symbols: | Plant self-incompatibility protein S1 family | chr3:8690737-8691144 REVERSE LENGTH=408 Length=408 Score = 536 bits (290), Expect = 5e-152 Identities = 366/402 (91%), Gaps = 7/402 (2%) Strand=Plus/Plus Query 1 ATGATATCCACCAAAGCATATAGCCTCTTCATTGTCTCCTTAGCCTTAGCCTTTACCTCT 60 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 1 ATGATATCCACCAAAGCATATAGCCTCTTCCTTGTCTCCTTAGCCTTAGCCTTTACTTCT 60 Query 61 TCATTATCTTTCACGGCTCCAGTCTTCACCGTAAAGATAACCAACAACCTTGCACTTGGC 120 || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 61 TCGTTATCTTTCACGGCTCCAGTCTTCACCGTAAAGGTAACCAACAACCTTGCACTTGAC 120 Query 121 TCTAAACCGATCATCATAAGCTGCATCTCGTCCAAATTAGATACTTCGTCTCAGGTGTTA 180 ||| | ||| ||| |||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 121 TCTCATCCGTTCACCATAAGATGCACCTCGTCCAAATTAGATACTTCGTCTCAGGTGTTA 180 Query 181 TTTCGAGGTGAGCCTTTTGGG-TTGATGTTTAACACAGACCAATCAGTTAAATGGAGTTG 239 |||||||||||| ||| | | || |||||| |||| ||||||||| || ||||| ||| Sbjct 181 TTTCGAGGTGAGACTTACGTGCTT-ATGTTTGACACCGACCAATCAACTAGATGGAATTG 239 Query 240 CGACATCTTCTCATCATCGGGAGCCAAAAAGACTAGTTTCGTCCTCTTTGATCTTGATAG 299 || ||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| Sbjct 240 CGTCATCTTCTCATCATCGG---CCAAAATGACTCCTTTCGTCCTCTTTGATCTCGATAG 296 Query 300 AGACAAATCAAGATGCAGACCCGATGGTT-TATGTCTATGGCAAATCAATCCTGATGGTT 358 ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| Sbjct 297 AGACAAATCAAGATGCAAACCCGATGGTTCT-TGTCTATGGCAAATCAATCCTGATGGTT 355 Query 359 TCTACCTATATGTCGCTTCTATTCAAAAATACCAAAAGCAAT 400 |||||||||| |||||||||||||| |||||||||||||||| Sbjct 356 TCTACCTATACGTCGCTTCTATTCATAAATACCAAAAGCAAT 397 > AT3G24068.1 | Symbols: | Plant self-incompatibility protein S1 family | chr3:8692191-8692676 REVERSE LENGTH=486 Length=486 Score = 398 bits (215), Expect = 3e-110 Identities = 346/406 (85%), Gaps = 21/406 (5%) Strand=Plus/Plus Query 1 ATGATATCCACCAAAGCATATAGCCTCTTCATTGTCTCCTTAGCCTTAGCCTTTACCTCT 60 |||||||||||||||||||||||||||||| | ||||||||||||||| | |||||| Sbjct 10 ATGATATCCACCAAAGCATATAGCCTCTTCCTGGTCTCCTTAGCCTTA-AC--GACCTCT 66 Query 61 TCATTATCTTTCACGGCTCCAGTCTTCACCGTAAAGATAACCAACAACCTTGCACTTGGC 120 | |||||||| ||||||||||||||||| ||||||||| |||||||||||||| |||| Sbjct 67 TGGTTATCTTTGGCGGCTCCAGTCTTCACCATAAAGATAAGCAACAACCTTGCACCTGGC 126 Query 121 TCTAAACCGATCAT-CATAAGCTGCATCTCGTCCA-AATTAGATACTTCGTCT-CAGGTG 177 ||||| |||||| | |||||| ||||||||| ||| || ||||| || |||| | | || Sbjct 127 TCTAATCCGATC-TCCATAAGTTGCATCTCG-CCACAAAAAGATATTTGGTCTGCTGTTG 184 Query 178 TTATTTCGAGGTGAGCCTTTTG-GGTTGATGTTTAACACAGACCAATCAGTTAAATGGAG 236 ||| || |||| || || | | ||| |||| ||||| ||| |||||||||||||| Sbjct 185 -TATCTCAAGGTCAGAGTTCCGAGTTTG-GGTTTGACACAAACCGATCAGTTAAATGGAC 242 Query 237 TTGCGACATCTTCTCATCATCGGGAGCCAA-AAAGACTAGTTTCGTCCTCTTTGATCTTG 295 ||| |||| || |||||||||| ||| ||||| |||||||||| ||||||||||| Sbjct 243 TTGTGACA-----TC-TCATCGGGAG-CAAGAAAGAGTAGTTTCGTCATCTTTGATCTTA 295 Query 296 ATAGAGACAAATCAAGATGCAGACCCGATGGTTTATGTCTATGGCAAATCAATCCTGATG 355 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 296 ATAGAGACAAATCAAGATGCAGATCCGATGGTTTTTGTCTATGGCAAATCAATCCTGATG 355 Query 356 GT-TTCTACCTATATGTCGCTTCTATTCAAAAATACCAAAAGCAAT 400 || || ||||||||||||||||||||||| |||||||||||||||| Sbjct 356 GTCTT-TACCTATATGTCGCTTCTATTCAGAAATACCAAAAGCAAT 400 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18900673624 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5