BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479930
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24050.1 | Symbols: GATA1 | GATA transcription factor 1 | ch... 1208 0.0
> AT3G24050.1 | Symbols: GATA1 | GATA transcription factor 1 |
chr3:8685873-8687677 FORWARD LENGTH=1227
Length=1227
Score = 1208 bits (654), Expect = 0.0
Identities = 991/1137 (87%), Gaps = 90/1137 (8%)
Strand=Plus/Plus
Query 1 AAAACTTCTTCTGGTTCCTTTTATCAACATTTTTTCTCTCTCTTAAAACTTCGAAGCGAt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 AAAACTTCTTCTGGTTCCTTTTATCAACATTTTTTCTCTCTCTTAAAACTTCGAAGCGAT 171
Query 61 ttttgattttttCTTA-ACTATGGAAATGGAATCATTCATGGACGACCTTTTGAACTTCT 119
|||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TTTTGA--TTTAC--AGACTATGGAAATGGAATCATTCATGGACGACCTTTTGAACTTCT 227
Query 120 CTGTACCGGAAGAAGAAGAAGACGACGAAGAAAATACTCAACCACCGAGGAATATTACTC 179
||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 228 CTGTACCGGAAGAGGAAGAAGACGACGACGAACATACGCAACCACCGAGGAATATTACTC 287
Query 180 GCCGGAAAACTGGAATACGGCAAACGGATTCCTTCGGCCTCTTTAATACCGATGACCTTG 239
|||||||||||||| |||||| ||| || |||||||| |||||||||||||| |||||||
Sbjct 288 GCCGGAAAACTGGATTACGGCCAACAGACTCCTTCGGTCTCTTTAATACCGACGACCTTG 347
Query 240 CAGTGGTTGAGGAAGAGGATTTGGAATGGATTTCAAACAAAAATGCTTTTCCGGTGATTG 299
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 GAGTGGTTGAAGAAGAGGATTTGGAATGGATTTCAAACAAAAATGCTTTTCCGGTGATTG 407
Query 300 AAACATTCGTCGGCGTATTA-C--C---G--------T-TGA-G--TC--C-GGAGAGAG 338
||||||||||||| |||||| | | | | | | | || | ||| ||||
Sbjct 408 AAACATTCGTCGGTGTATTACCGTCGGAGCATTTTCCTATAACGTCTCTTCTGGAAAGAG 467
Query 339 AAGCGACTGAGGGAAAACAGTTGAGTCCGGTTTCAGTACTCGAGACGAGTAGCCATAGCT 398
|||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 468 AAGCGACTGAGGTAAAACAGCTGAGTCCGGTTTCAGTACTTGAGACGAGTAGCCATAGCT 527
Query 399 CTATAACGACGACGGCGACGACCTCAAACAGCAGCGGCGGAAGTAACGGAAGCACGGCTG 458
| | || | |||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 528 C-----C-AC-A--ACGACTACCTCAAACAGTAGCGGCGGAAGTAACGGAAGCACGGCCG 578
Query 459 TGGCCACCACCCCTACAACCACCCCAACGATAATGAGCTGCTGCGTTGGTTTTAAAGCGC 518
|||| || | || || ||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 579 TGGCTACGA--CC-ACCACCACTCCAACAATAATGAGCTGTTGCGTTGGTTTTAAAGCGC 635
Query 519 CGGCTAAAGCGAGAAGCAAGCGTCGTCGTACAGGACGCCGTGATTTAGGAGTTTTGTGGA 578
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 636 CGGCTAAAGCGAGAAGCAAGCGTCGTCGTACAGGACGCCGTGATTTACGAGTTTTGTGGA 695
Query 579 CAGGAAACGAGCAAGGAGGAATACAGAAGAAGAAGACGCCGTCAGTTGCGGCGGCGGCGG 638
|||||||||||||||||||||||||||||||||||||| | | || | | ||||||| |
Sbjct 696 CAGGAAACGAGCAAGGAGGAATACAGAAGAAGAAGACGATGACTGT-G-G-CGGCGGCTG 752
Query 639 CGATGATTATGGGAAGGAAGTGTCAACACTGTGGAGCGGAGAAGACGCCGCAATGGAGGG 698
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 753 CGTTGATTATGGGAAGGAAGTGTCAACACTGTGGAGCGGAGAAGACTCCGCAATGGAGGG 812
Query 699 CGGGACCAGCGGGACCGAAGACTCTGTGTAACGCTTGTGGCGTGAGGTATAAGTCTGGGA 758
| ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 813 CAGGACCAGCGGGGCCTAAGACTCTGTGTAACGCTTGTGGCGTGAGGTATAAGTCCGGGA 872
Query 759 GGCTAGTTCCGGAGTATCGTCCGGCGAACAGTCCAACTTTCACGGCGGAATTACATTCGA 818
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 873 GGCTAGTTCCGGAGTATCGTCCAGCGAACAGTCCAACTTTCACGGCGGAGTTACATTCGA 932
Query 819 ATTCTCACCGGAAGATTGTAGAGATGAGGAAGCAGTATGAGTCCGGTGACG----C--TG 872
|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 933 ATTCTCACCGGAAGATTGTAGAGATGAGGAAGCAGTATCAGTCCGGTGACGGTGACGGTG 992
Query 873 ATCGGAAAGATTGTGGATAAAA--t--tt----tt---------------ggagaaactt 909
|||||||||||||||||||||| | || || ||||||||||
Sbjct 993 ATCGGAAAGATTGTGGATAAAAAGTGATTAGGATTAATTTTTATTTTTTCGGAGAAACTT 1052
Query 910 ttttttcgttaatttttc-ttta-tttgt-t------gtttttaa-gtttgttttagggt 959
|||||| || |||||| |||| ||| | | |||||||| || |||||||||||
Sbjct 1053 TTTTTTTTTT--TTTTTCGTTTAATTTCTCTTTATTTGTTTTTAAAGTCTGTTTTAGGGT 1110
Query 960 tttgcagttggaatttaggttttt--ttattt--t-at-ttttgt-tt-gTGAAATTAGA 1011
|||||||||||||||||||||||| || ||| | || |||| | || ||||||||||
Sbjct 1111 TTTGCAGTTGGAATTTAGGTTTTTAATTTTTTGCTTATCTTTTTTATTTGTGAAATTAGT 1170
Query 1012 GGTAATTACTTAATTAGGGGATGTTATGGTAAGGGAATGGAAGATAACTTTCTCATT 1068
|||||||||||| |||||| || ||||||| | ||||||||||||||||||||||||
Sbjct 1171 GGTAATTACTTATTTAGGGAATATTATGGTCATGGAATGGAAGATAACTTTCTCATT 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5