BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479931
Length=1544
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24040.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 2194 0.0
> AT3G24040.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr3:8680877-8683289
REVERSE LENGTH=1573
Length=1573
Score = 2194 bits (1188), Expect = 0.0
Identities = 1454/1576 (92%), Gaps = 44/1576 (3%)
Strand=Plus/Plus
Query 1 ACTGTGACCATTACATACAACCGTTAGCTTTCTTCTCTAGCCGTCG-AGTTTCACGCGCC 59
|||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||
Sbjct 8 ACTGTGACCATTACATACTACAGTTAGCTTTCTTCTCTAGCCGTCGAAGTTTCACGCGCC 67
Query 60 GCCGTGAGAAAATGCAG-AAAGGACCGGAGCAACCGAGAGTCACTCTTTACATAATCCTC 118
||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 68 GCCGTGAGAAAATGCAGCACA-CACCGGAGCAACCGAGAGTCACTCTTTACATAATCCTC 126
Query 119 ACCACCGcttttctctctctttgtttcctcctctctctcttc-tcctctt--ca-cactc 174
|||||||| ||||||||||| |||||||||||||||||| || ||||||| || ||||
Sbjct 127 ACCACCGCGTTTCTCTCTCTATGTTTCCTCCTCTCTCTC-TCTTCCTCTTCCCAGTACTC 185
Query 175 ttcatcttcATACACCGGACGACCCGAAGATCTACGACCCGACCCGAGACTCTTTCCTTC 234
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 186 TTCATCTTCCTACACCGGACGACCCGATGATCTACGACCCGACCCGAGACTCTTTCCTTC 245
Query 235 CTCATCCAAAATCGCCGCCGATACAGCTCCTCCTTCAATTGCTTACCTTATCTCCGGATC 294
|| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 246 TTCCTCCAAAATCGCCGCCGATACAGCTCCTCCTTCAATCGCTTACCTAATTTCCGGATC 305
Query 295 TTCCGGTGACTCGAGACGGATCCTTCGTCTTCTCTACGCTACTTACCATCCTCGGAATCG 354
||| |||||| || |||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 306 TTCTGGTGACACGCGACGAATCCTTCGACTTCTCTACGCTACTTACCATCCTCGAAATCG 365
Query 355 ATATCTTCTCCATCTCGATAGCTTAGCGACACAATCCGAACGAGATCGGCTCGCTGTTGC 414
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 366 ATATCTTCTTCATCTCGATAGCTTAGCGACACAATCTGAACGAGATCGGCTCGCTGTTGA 425
Query 415 TGTACAAGATGTACCGATCTTTAGAGCTGCAAGGAATGTTGATGTTATTGGGAAGCCTGA 474
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TGTACAAGATGTACCGATTTTTAGAGCTGCAAGGAATGTTGATGTTATTGGGAAGCCTGA 485
Query 475 TTTCGCGTATCAGAGAGGATCGTCTCCGATGGCTTCTACGCTTCATGGTGCTTCGATTCT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TTTCGCGTATCAGAGAGGATCGTCTCCGATGGCTTCTACGCTTCATGGTGCTTCGATTCT 545
Query 535 TCTTAGATTGTCAGGAGCTTGGGATTGGTTTGTTAATCTTAGTGTTGATGATTATCCTCT 594
|||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||
Sbjct 546 TCTTAGATTGTCAGGAACTTGGGATTGGTTTGTTAGTATTAGTGTTGATGATTATCCTCT 605
Query 595 CGTTACTCAAGATGAGCTTCTTCATATTATGTCACATTTGCCTAAGGACTTGAATTTTGT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 CGTTACTCAAGATGAGCTTCTTCATATTATGTCACATTTGCCTAAGGACTTGAATTTTGT 665
Query 655 GAACCACACTAGCTACATTGGCTGGAAAGAGTCCAGGAGGTTGAAGCCAGTTATTGTTGA 714
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 666 GAACCACACTAGCTACATTGGTTGGAAAGAGTCCAGGAAGTTGAAGCCAGTTATTGTTGA 725
Query 715 TCCAGGGCTATATCTTGTGGAGAAAACCGATATGTTTTTCGCTTCACAGAAACGAGAGTT 774
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 726 TCCAGGGCTCTATCTTGTGGAGAAAACCGATATGTTTTTCGCTTCGCAGAAACGAGAGTT 785
Query 775 GCCTAAGGCTTTCAAGTTATTCTCAGGTCCATCTTTCTCCATCTTAAGCCGTAATTTCAT 834
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 786 GCCTAAGGCTTTCAAGTTATTCTCAGGTCCATCTTTCTCCATCTTAAGCCGGAATTTCAT 845
Query 835 GGAGCACTGTGTCTTAGGCACTGACAACTTCCCTCGGACTTTACTCATGTACTTGTCCAA 894
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 846 GGAGCACTGTGTCTTAGGCACTGACAACTTCCCTCGGACTCTACTCATGTACTTGTCCAA 905
Query 895 CACACCTGATTCCCTCTCCAACTACTTCCCTACTATCCTCTGCAACTCGAATATCTTTAA 954
|||||||||||| || |||||||||||||| ||||||||||||||| || ||| ||| ||
Sbjct 906 CACACCTGATTCTCTTTCCAACTACTTCCCAACTATCCTCTGCAACACGGATACCTTCAA 965
Query 955 AAAGACCATCATCAACAACAACTTACTCTACCTAGCTTCTAACGACACTTCTAAAGAAAA 1014
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 AAAGACCATCATGAACAACAACTTACTCTACCTAGCTTCTAACGACACTTCTAAAGAAAG 1025
Query 1015 ATACCATCAGCTTGATCACAAAGAGTTCACAGAAATGGTTGAATCCGGAGCAGCATTTGC 1074
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1026 ATACCATCAGCTTGATCACAAAGAGTTCACAGAAATGGTTGACTCCGGAGCAGCTTTTGC 1085
Query 1075 AAGAGGATTCAGGTTCGATGACCCTATCCTTGATCGCATCGATCATGAACTTCTGGGACG 1134
|||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||
Sbjct 1086 AAGAGGATTCAGGTACGACGACACTGTCCTTGATCGCATCGATCATGAACTTCTGGGACG 1145
Query 1135 CAGACCTGGTGAAGCTGTGCCTGGTGGTTGGTGTTTAGGAGATTCTGGTAAAAACCGCAG 1194
|| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1146 CAAACCTGGTGAAGTTGTGCCTGGTGGTTGGTGTTTAGGAGATTCTAGTAAAAACCGTAG 1205
Query 1195 CTCGTGTTCTGTCTGGGGTGACTCGGGTATTCTAAGACCCGGTTCTGGTTCCGATAGGCT 1254
||||||||| |||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 1206 CTCGTGTTCCGTCTGGGGTGACTCGGGTATCCTTCGGCCCGGTTCTGGTTCCGATAGGCT 1265
Query 1255 CGAGAGACGAATAGTTGAGCTATTATCAAACGATTGGTTCAGATCGCACCAATGC--A-- 1310
|||||||||||| |||||| || ||||||||||||||||||||| |||||||||| |
Sbjct 1266 CGAGAGACGAATTGTTGAGTTACTATCAAACGATTGGTTCAGATTGCACCAATGCGTACC 1325
Query 1311 T-A-TC--CGAATGATCC--A----A-T---A---GAGTACATAGTTTTCCAA--CACGA 1351
| | | || ||||||| | | | | ||||| |||||| ||||| |||||
Sbjct 1326 TGAATGATCGGATGATCCTCACCGCACTTTCAATAGAGTAAATAGTTGTCCAAGACACGA 1385
Query 1352 AGAAGATAACGGTAATTCTATGCTTCTGTATCTTTAGAGAGAGTTCCACTTCCACATTGT 1411
|||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1386 AGAAGATAACGGTACTT-TATGCTTCTGTATCTTTAGAGAGAGTTCCACTTCTACATTGT 1444
Query 1412 AATCTATGACTTTGAGAGTGTTTGTTCCATTGTTGTAAAAGAAA--C-ATCTCAAAGCAA 1468
|| || |||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 1445 AACCTGTGACTTTGAGAGTGTTTGTTCCATTGTTGTTGTAGAAAAACCATCTCAAAGCTG 1504
Query 1469 AGAAATGAAACGACTCGGTTCATTAATTTATTTAGTTAAAGTCTTAACCGGTATAAAATC 1528
|||||||||||||||||||||||| || | || |||| |||||||||||||||
Sbjct 1505 AGAAATGAAACGACTCGGTTCATTGGTT------G--AA-GTCTAAACCGGTATAAAATC 1555
Query 1529 CCGGTTTTTATCTAAT 1544
|||||||| |||||||
Sbjct 1556 CCGGTTTTAATCTAAT 1571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76204427310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5