BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479932
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24030.1 | Symbols: | hydroxyethylthiazole kinase family pr... 1352 0.0
> AT3G24030.1 | Symbols: | hydroxyethylthiazole kinase family
protein | chr3:8679552-8680824 REVERSE LENGTH=1153
Length=1153
Score = 1352 bits (732), Expect = 0.0
Identities = 841/895 (94%), Gaps = 2/895 (0%)
Strand=Plus/Plus
Query 2 GAATGGAATCAAAATCACAGCAAAACGAGTGGAGCTCCGGCGTGTGGGCTCACTTAACCA 61
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 11 GAATGGAATCAAAATCAGAACAAAACGAGTGGAGCTCCGGCGTGTGGGCTCACTTAACCG 70
Query 62 CCGTCCGG-AGACAATCGCCGCTAGTTCAGTGCATCACCAACTTCGTCTCCATGGATCTC 120
|||| ||| | |||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 71 CCGTACGGCA-ACAATCGCCGCTTGTTCAGTGCATCACCAACTTCGTCTCGATGGATCTC 129
Query 121 GTCGCCAACACGCTTTTAACCGCCGGTGCATCTCCGGCTATGGTCCATTCCGTCGTTGAG 180
|| ||||||||||||||| |||||||||||||||| || |||||||||||||||||||||
Sbjct 130 GTTGCCAACACGCTTTTATCCGCCGGTGCATCTCCAGCGATGGTCCATTCCGTCGTTGAG 189
Query 181 ATTCCTGATTTCACACCTCATATTCACGCGCTCTGCGTCAACGTTGGAACACTTACACCT 240
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 190 ATTCCTGATTTCACTCCTCATATTCACGCGCTCTGCGTCAACGTCGGAACACTTACACCT 249
Query 241 GACTGGCTTCCGTCTATGAAAGCTGCCGCCGAACTCGCTTCTAAGCTCGGAAAGCCTTGG 300
|||||||||||||| |||||||||||||| |||||||||||| ||||| |||||||||||
Sbjct 250 GACTGGCTTCCGTCAATGAAAGCTGCCGCTGAACTCGCTTCTCAGCTCCGAAAGCCTTGG 309
Query 301 GTTCTCGATCCCGCCGCCGTGAGTTGCTCCGGATTCCGATTAAAAGCGTGTCTGGAGCTC 360
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 310 GTTCTTGATCCCGCCGCCGTGAGTTGCTCCGGATTCCGATTAAAAGCGTGTTTGGAGCTC 369
Query 361 ATCGAGCTAAAACCTAGTGTAATCAAAGGAAACGGTTCTGAGATTATTGCTCTCTCCTCT 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 ATCGAGCTAAAACCTACTGTAATCAAAGGAAACGGTTCTGAGATTATTGCTCTCTCCTCT 429
Query 421 GCTTCACGTGGACAAACTAAGGGTGCTGATAGCTCACATGAGTCTACAGACGCTATAGAA 480
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 430 GCTTCACGTGGACAAACTAAGGGTGCTGATAGCTCACATGAATCAACAGACGCTATAGAA 489
Query 481 GCTGCAAAGTCATTAGCTCTGTCAAGTGGTGCTGTTGTTGCAGTGTCCGGAGCTGTTGAT 540
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 490 GCTGCAAAGTCATTAGCGATGTCAAGTGGTGCTGTTGTTGCAGTGTCAGGAGCTGTTGAT 549
Query 541 ATCGTTACGGATGGGAAACAGGTTATTGGGGTTCACAACGGGACGAAGATGATGCAAAAG 600
|| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 550 ATTGTTACTGATGGGAAACAGGTTATTGGTGTTCACAACGGGACGAAGATGATGCAACAG 609
Query 601 ATCACTGCAACTGGTTGTTCTCTTGCTGGTTTGGTTGCAGCGTTTCTCGCTATTGATTCA 660
|| |||||||||||||||||||| ||||||||| ||| ||||||||| ||||||||||||
Sbjct 610 ATTACTGCAACTGGTTGTTCTCTAGCTGGTTTGATTGTAGCGTTTCTTGCTATTGATTCA 669
Query 661 TCACGGGTGCTGCAAGCTACAGTTTCCGCTATGTCGGTCTTTGGTATCGCTGGTGAGTTG 720
|||||||| ||| ||||||| |||||||||||| | |||||||| || || |||||||||
Sbjct 670 TCACGGGTACTGGAAGCTACGGTTTCCGCTATGGCTGTCTTTGGCATTGCAGGTGAGTTG 729
Query 721 GGTGAAGCGATGGCGAATGGTCCAGCTTCGTTGAGAATGCATTTGATAGATTCTCTTTAT 780
|||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 730 GGTGAAGCGATGGCGAATGGTCCAGCGTCATTGAGAATGCATTTGATAGATTGTCTTTAT 789
Query 781 GGGTTGGATGAAAGTACAGTGCTTAAACGTGTGAATGTGACCAGGTTGGGTTGATGTACA 840
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 GGGTTGGATGAAACCACAGTGCTTAAACGTGTGAATGTGACCAGGTTGGGTTGATGTACA 849
Query 841 TGAATCTTTTTCTTGGAATAAAGTTTCTTAAGATATCTCTGCAACGTCCTTGATC 895
|||||| | ||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 850 TGAATCATCTTCTTTGAATAAAGTTTCTTAAGATATCTCTGCAATTTTCTTGATC 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5