BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479933
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24020.1 | Symbols: | Disease resistance-responsive (dirige... 1116 0.0
AT4G13580.1 | Symbols: | Disease resistance-responsive (dirige... 651 0.0
> AT3G24020.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr3:8678738-8679656 FORWARD
LENGTH=919
Length=919
Score = 1116 bits (604), Expect = 0.0
Identities = 690/733 (94%), Gaps = 0/733 (0%)
Strand=Plus/Plus
Query 1 ATGATGATCAAGCAATCACCATTCTTGCTTTTAACTGTAATCTTGTTCACAATTGCTGTG 60
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 90 ATGATGATCAAGCAATCACCATTCTTGCTTTTAACAACAATCTTGTTCACGGTTGCTGTG 149
Query 61 TTTGTAGCAGCACTTGATCCTGCACCTGAAGACCCCATTTTCGAACTCTACATGCATGAT 120
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 150 TTTGTAGCAGCGCTTGATCCTGCACCTGAAGACCCCATTTTCGAACTCTACATGCACGAT 209
Query 121 TTACTTGGAGGAAGTAGCCCCACGGCAAGGCCGATCACAGGTTTGCTCGGCAACATTTAC 180
|||||||||||||| |||||||| || ||||| ||||| ||||||||||| |||||||||
Sbjct 210 TTACTTGGAGGAAGCAGCCCCACCGCGAGGCCCATCACGGGTTTGCTCGGGAACATTTAC 269
Query 181 AACGGTCAAGTTCCGTTTGCTAAGCAGATTGGTTTCACTCCTCCCCAAAACGGTATAGCC 240
|||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 270 AACGGTCAAGTTCCATTTGCTAAGCAGATTGGTTTCACTCCTCCTGAGAACGGTATAGCC 329
Query 241 ATACCAAATGCAAACGGCGCACTCCCAACGGTTAACGGCATCAACGGTGTACCTCTTGGG 300
||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 330 ATACCCAATGCAAACGGCGCACTACCAACGGTTAACGGCATCAATGGTGTACCTCTTGGG 389
Query 301 ACAGGCTTGTCTGGTACAGCCTACTCTGGGCAGAACCTGAATGGGATTCAGACTCAGTTG 360
|| ||||||||||||||||| |||||||| |||||||| || || |||||||||||||||
Sbjct 390 ACCGGCTTGTCTGGTACAGCATACTCTGGTCAGAACCTAAACGGAATTCAGACTCAGTTG 449
Query 361 GGTCCTGATGGTTTGAGTCTTGGGTTTGGTACCATTACCGTGATCGATGACATACTCACA 420
|||||||||||| | ||||| ||||||||||||||||| |||||||| || |||||||||
Sbjct 450 GGTCCTGATGGTCTCAGTCTCGGGTTTGGTACCATTACTGTGATCGACGATATACTCACA 509
Query 421 TCTGGTCCTGACTTGGGTTCGCAGCCGCTTGGTAAGGCTCAAGGAGTTTATGTTGCAAGT 480
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 510 TCTGGTCCTGACTTGGGTTCACAGCCACTTGGTAAGGCTCAAGGAGTTTATGTTGCAAGT 569
Query 481 TCTGCAGATGGAAGCACACAGATGATGGCTTTCACAGCTATGTTTGAAGGTGGCGAGTAC 540
|||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||
Sbjct 570 TCTGCAGATGGAAGCACACAGATGATGGCTTTCACAGCTATGCTTGAAGGAGGAGAGTAC 629
Query 541 AATGACAACCTCAACTTCTACGGAATTTACAGGATCGGAAGTGCCATGTCGCATCTATCA 600
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 630 AACGACAACCTTAACTTCTACGGAATTTACAGGATCGGAAGCGCCATGTCGCATCTATCA 689
Query 601 GTGACTGGGGGAACAGGTAGGTTCAAGAACGCTTGTGGGTTTGCAGAGGTCAGACCATTG 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 GTGACTGGAGGAACAGGTAGGTTCAAGAACGCTTGTGGGTTTGCAGAGGTCAGACCATTG 749
Query 661 ATTCCATCAGGTCAGCATGTAGTGGATGGAGCAGAGTCTTTGCTGAGGATCATTGTCCAT 720
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 750 ATTCCATCAGGTCAGCATGAAGTGGATGGAGCAGAGTCTTTGCTTAGGATCATTGTCCAT 809
Query 721 CTGAAGTACTAAA 733
|||||||||||||
Sbjct 810 CTGAAGTACTAAA 822
> AT4G13580.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr4:7900374-7901328 FORWARD
LENGTH=955
Length=955
Score = 651 bits (352), Expect = 0.0
Identities = 614/740 (83%), Gaps = 20/740 (3%)
Strand=Plus/Plus
Query 4 ATGATCAAGCAATCACCATTCTTGCTTTTAACTGT-AATCTTGT-TCACAATTGCT-GTG 60
||||| || ||||||||||||| |||||||| | |||||| | ||| | |||| |
Sbjct 54 ATGATGAAACAATCACCATTCTCACTTTTAAC-ATCAATCTT-TCTCATAGCTGCTCTTT 111
Query 61 TT--TGTAGC-A--GCACTTGATCCTGCACCTGAAGACCCCATTTTCGAACTCTACATGC 115
|| || | | | ||||| ||||||||||| |||||||| ||||| ||| | |||||||
Sbjct 112 TTACTGCAACTACCGCACTCGATCCTGCACCCGAAGACCCGATTTTTGAATTGTACATGC 171
Query 116 ATGATTTACTTGGAGGAAGTAGCCCCACGGCAAGGCCGATCACAGGTTTGCTCGGCAACA 175
| ||| ||||||| ||||| || ||||| ||||| || || || |||||||| || ||||
Sbjct 172 ACGATATACTTGGGGGAAGCAGTCCCACAGCAAGACCCATTACGGGTTTGCTTGGAAACA 231
Query 176 TTTACAACGGTCAAGTTCCGTTTGCTAAGCAGATTGGTTTCACTCCTCCCCAAAACGGTA 235
| |||||||||||||| ||||||||||||||||| ||||| ||| || |||||||||
Sbjct 232 TCTACAACGGTCAAGTACCGTTTGCTAAGCAGATCGGTTTTGTTCCACCGCAAAACGGTG 291
Query 236 TAGCCATACCAAATGCAAACGGCGCACTCCCAACGGTTAACGGCATCAACGGTGTACCTC 295
|||||||||| || ||||| || ||| | |||||||||||||| ||||||||| | ||
Sbjct 292 TAGCCATACCCAACGCAAATGGGGCAATGCCAACGGTTAACGGTATCAACGGTATTCC-A 350
Query 296 TT-GGGACAGGCTTGTCTGGTACAGCCTACTCTGGGCAGAACCTGAATGGGATTCAGACT 354
|| || || || |||||||| ||||| | ||||| ||||| || |||||||||||||||
Sbjct 351 TTAGGTACTGGTTTGTCTGGAACAGCGTTTTCTGGTCAGAATCTAAATGGGATTCAGACT 410
Query 355 CAGTTGGGTCCTGATGGTTTGAGTCTTGGGTTTGGTACCATTACCGTGATCGATGACATA 414
|||||||||||||||||| |||||||||||||||| || || || ||||| || ||||||
Sbjct 411 CAGTTGGGTCCTGATGGTCTGAGTCTTGGGTTTGGAACAATCACGGTGATTGACGACATA 470
Query 415 CTCACATCTGGTCCTGACTTGGGTTCGCAGCCGCTTGGTAAGGCTCAAGGAGTTTATGTT 474
|||||||||||||||||||||| || || || ||||||||||||||||| |||||||||
Sbjct 471 ATCACATCTGGTCCTGACTTGGGGTCACAACCACTTGGTAAGGCTCAAGGTGTTTATGTT 530
Query 475 GCAAGTTCTGCAGATGGAAGCACACAGATGATGGCTTTCACAGCTATGTTTGAAGGTGGC 534
|| || || |||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 531 GCCAGCTCAGCAGATGGAAGCACGCAGATGATGGCTTTCACAGCTATGCTTGAAGGTGGA 590
Query 535 GAGTACAATGACAACCTCAACTTCTACGGAATTTACAGGATCGGAAGTGCCATGTCGCAT 594
||||||||||| || || || ||||| ||||| || ||||| ||||| |||||||| |||
Sbjct 591 GAGTACAATGATAATCTAAATTTCTATGGAATCTATAGGATAGGAAGCGCCATGTCACAT 650
Query 595 CTATCAGTGACTGGGGGAACAGGTAGGTTCAAGAACGCTTGTGGGTTTGCAGAGGTCAGA 654
|| ||||||||||| ||||| || ||||| ||||||||||| || ||||||||||| ||
Sbjct 651 CTGTCAGTGACTGGAGGAACCGGAAGGTTTAAGAACGCTTGCGGATTTGCAGAGGTTAGG 710
Query 655 CCATTGATTCCAT-CAGGTCAGCA-TGTAGTGGATGGAGCAGAG-T-CTTTGCTGAGGAT 710
|| |||||||| | | || || || | | || |||||||| ||| | || | |||||||
Sbjct 711 CCGTTGATTCC-TGCGGGCCAACACTTT-GTTGATGGAGCTGAGATGCTGT--TGAGGAT 766
Query 711 CATTGTCCATCTGAAGTACT 730
||||||||||||||| ||||
Sbjct 767 CATTGTCCATCTGAAATACT 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38127717573
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5