BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479934
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24010.1 | Symbols: ING1, ATING1 | RING/FYVE/PHD zinc finger... 1288 0.0
> AT3G24010.1 | Symbols: ING1, ATING1 | RING/FYVE/PHD zinc finger
superfamily protein | chr3:8675956-8678220 REVERSE LENGTH=903
Length=903
Score = 1288 bits (697), Expect = 0.0
Identities = 845/913 (93%), Gaps = 23/913 (3%)
Strand=Plus/Plus
Query 1 TATCCATTTTGCGAAACCCTAAATTCCCAAATGTCATTCGCCGAGGAATTTGAAGCTAAT 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 TATCCATTTTGGGAAACCCTAAATTCCCAAATGTCATTCGCCGAGGAATTTGAAGCTAAT 64
Query 61 CTTGTTTCGCTGGCTCATGTTTTGCAGAAGAAATATGCTCTCCTCCGTGATTTGGATAAA 120
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 65 CTTGTTTCGCTGGCCCATGTTTTGCAGAAGAAATATGCTCTCCTGCGCGATTTGGATAAA 124
Query 121 AGTTTGCAAGAAAATCAAAGACAAAATGAACAACGATGTGAAAAGGAAATAGATGATATA 180
|||||||||||||| ||| |||||||||||||||| |||||||| |||||||| ||||||
Sbjct 125 AGTTTGCAAGAAAACCAACGACAAAATGAACAACGCTGTGAAAAAGAAATAGAGGATATA 184
Query 181 AGAAAGGGCAGAGCTGGAAATATCACACCCAATACCTCTCTTACACAGTTCTCAGAGGAA 240
|||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 185 AGAAGGGGCAGAGCTGGAAATATCACACCTAATACCTCTCTTACAAAGTTCTCAGAGGAA 244
Query 241 GCACTTGATGAACAGAAACACAGCGTCCGGATCGCTGACGAGAAAGTCGCACTGGCTATG 300
||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 245 GCACTTGATGAACAGAAACACAGTGTCCGGATTGCTGACGAGAAAGTCACACTGGCTATG 304
Query 301 CAGGCATATGATCTGGTGGATATGCATGTTCAGCAACTTGACCAGTATATGAAAAAATCC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 CAGGCATATGATCTGGTGGATATGCATGTTCAGCAACTTGACCAGTATATGAAAAAATCC 364
Query 361 GAGGAACG-GTTTCT-ATCAGAGAAAGAGGCTGCTGCTGCTG-CATTAGAACTGGAGAAC 417
|| ||| | | | | | ||||||||| ||||| ||||| | |||||||||||||||||
Sbjct 365 GACGAA-GTGATCCGCAA-AGAGAAAGAAGCTGCCGCTGC-GACATTAGAACTGGAGAAC 421
Query 418 AACGGGAAAGCCGGGAATGCTGGTGAAGGTGGAAGAGGAGGGCGAAAGAAGACAAGGCTA 477
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 422 AACGGGAAAGCCGGGAATGCTGGTGAAGGTGGAAGAGGAGGGCGAAAAAAGACAAGGCTA 481
Query 478 GCAACAGCAGCGTCAACAGCAGCAGCATCAACTGGGATGACTTCAAGTAATATGGATTTG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 482 GCAACAGCAGCGTCAACAGCAGCAGCATCAACTGGGATGACTTCAAGTAATATGGATCTG 541
Query 538 GATCTGCCTGTGGATCCAAACGAACCAACTTACTGCATCTGCAACCAAGTTAGCTATGGC 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 542 GATCTGCCTGTGGATCCAAACGAACCAACTTACTGCATCTGCAACCAAGTTAGCTTTGGC 601
Query 598 GAGATGGTTGCGTGTGATAACAATGAGTGCAAGATTGAGTGGTTCCATTTCGGTTGTGTC 657
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||
Sbjct 602 GAGATGGTTGCGTGTGACAACAATGCGTGCAAGATTGAGTGGTTCCATTTCGGTTGCGTC 661
Query 658 GGTCTGAAAGAACAACCCAAGGGGAAATGGTACTGCCCGGAATGTGCTACAGTCAAA-AA 716
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 662 GGTCTGAAAGAACAACCCAAGGGGAAATGGTACTGCCCGGAGTGTGCTACAGT-AAAGAA 720
Query 717 GAGCAGGAAAGGTCGATGATTTCAATCTTCACGTCTGCTA-TAATCCAAACAACTTCAT- 774
|||||||||||||||||||||| ||| |||| |||||||| ||||||||||| ||||||
Sbjct 721 GAGCAGGAAAGGTCGATGATTTGAATGTTCATGTCTGCTAATAATCCAAACAGCTTCATC 780
Query 775 AT--CTACTATAATCCAAACAGTTTAGTATATCAAAC-CATGTCAGATGTTGCCATATTA 831
|| ||||| ||||||||||||||||||||||||| | ||||| ||||||| |||| ||
Sbjct 781 ATATCTACTGTAATCCAAACAGTTTAGTATATCAA-CTCATGTAAGATGTTACCATGTTG 839
Query 832 ACTATGGATTGTAGAAATCTTGTTTTGTTCTTAAGCTCTTTTGTTTGACAAAATTAATAA 891
||||| ||||||||| |||||||| |||||| | ||||||||||||||||||
Sbjct 840 ACTATAAATTGTAGAAGTCTTGTTTCGTTCTT----T-----GTTTGACAAAATTAATAA 890
Query 892 ATGACTCTGGGGT 904
||| | ||||||
Sbjct 891 CTGAGTTTGGGGT 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44155815213
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5