BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479935
Length=1875
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24000.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2780 0.0
> AT3G24000.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:8672774-8674881 FORWARD LENGTH=1998
Length=1998
Score = 2780 bits (1505), Expect = 0.0
Identities = 1758/1876 (94%), Gaps = 33/1876 (2%)
Strand=Plus/Plus
Query 1 ATGGCCTTGCGTTTCCCGTCTCGTCTCCTCTCCCAGCTGAAGCTATCTCGGCGTCT-ACA 59
||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| | |
Sbjct 1 ATGGCATTGCGTTTCCCGCCTCGTCTCCTCTCTCAGCTGAAGCTATCTCGGCGTCTGA-A 59
Query 60 TTCTCTTCCGGCACCGTTATCTGAAGATTCCGATGACGAATCTTTAAAATTCCCATCCAA 119
|||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 60 TTCTCTCCCGGCACCGGTATCTGAAGATTCCGAAGACGAATCTTTAAAATTCCCATCCAA 119
Query 120 TGATCT-C------GA--G-G--GCA--G-T-T--A------T-AT-T-CCCGTCGATAG 152
|||||| | || | | ||| | | | | | || | |||| ||||||
Sbjct 120 TGATCTTCTTCTCCGAACGAGTAGCAATGATCTCGAGGGCAGTTATATTCCCGCCGATAG 179
Query 153 ACGTTTCTACAACACGCTGTTGAAGAAATGTACAGTCTTTAAATTACTCACTCAGGGAAG 212
||||||||||||||||||| |||||||||||||||||||||| || |||| |||||||||
Sbjct 180 ACGTTTCTACAACACGCTGCTGAAGAAATGTACAGTCTTTAAGTTGCTCATTCAGGGAAG 239
Query 213 GATCGTTCATGCTCATCTTATTCAATCTATCTTTCGTTATGATC-TCGTTATGAACAACA 271
|||||||||||||||| | ||||||||||||||||| |||| | | |||||| |||||
Sbjct 240 GATCGTTCATGCTCATATCCTTCAATCTATCTTTCGTCATGA-CATTGTTATGGGCAACA 298
Query 272 CTCTTCTCAATATGTATGCGAAATGCGGAAGTTTGGAGGAAGCTCGTAAAGTGTTCGACA 331
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 299 CTCTTCTCAATATGTATGCTAAATGCGGAAGTTTGGAGGAAGCTCGTAAAGTGTTCGAAA 358
Query 332 AAATGCCTGAGAGAGATTTTGTTACTTGGACTACTTTGATTTCTGGTTACTCGCAGCATG 391
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAATGCCTCAGAGAGATTTTGTTACTTGGACTACTTTGATTTCTGGTTACTCGCAGCATG 418
Query 392 ATAGACCTTTTGATGCGTTAGTATTGTTTAATCAGATGCTGAGATTTGGATTTAGTCCTA 451
|| |||||| |||||||||| | || |||||||||||| |||||||||||| |||||| |
Sbjct 419 ATCGACCTTGTGATGCGTTACTTTTTTTTAATCAGATGTTGAGATTTGGATATAGTCCCA 478
Query 452 ATGAGTTCACTTTGTCTAGTGTGATCAAAGCTGCTGCTGCTGAGAGAAGGGGTTGTTGTG 511
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 479 ATGAGTTCACTTTGTCTAGTGTGATCAAAGCTGCTGCAGCTGAGAGAAGGGGATGTTGTG 538
Query 512 GTCATCAACTTCATGGGTTTTGTGTTAAGTGTGGTTTTGATTCGAATGTTCATGTTGGTA 571
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 539 GTCATCAACTTCATGGGTTCTGTGTAAAATGTGGTTTTGATTCGAATGTTCATGTTGGTA 598
Query 572 GTGCTCTTCTTGATTTGTACACTCGCTATGGTCTTATGGATGATGCACAATTGGTCTCTG 631
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||
Sbjct 599 GTGCTCTTCTTGATTTGTATACTCGCTATGGTCTTATGGATGATGCACAATTAGTCTTTG 658
Query 632 ATGCCCTTGAGAGCAGGAATGATGTTTCTTGGAATGCTCTGATTGCTGGCCATGCTAGGA 691
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 659 ATGCGCTTGAGAGCAGGAATGATGTTTCTTGGAATGCTCTGATTGCTGGTCATGCTAGGA 718
Query 692 GGTGTGGTACAGAGAAGGCTCTTGAGCTTTTTCAAGGGATGCTTAGAGAGGGTTTTAGAC 751
| ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 719 GAAGTGGTACAGAGAAAGCTCTGGAGCTTTTTCAAGGGATGCTTAGAGATGGTTTTAGAC 778
Query 752 CTTCCCATTTCTCGTATGCTAGCCTCTTTGGTGCTTGTTCCAGTACTGGGTTCTTGGAGC 811
||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 779 CTTCCCATTTCTCATACGCTAGCCTCTTTGGTGCTTGTTCCAGTACAGGGTTCTTGGAGC 838
Query 812 AAGGGAAATGGGTTCATGCGTATATGATTAAATCCGGTGAAAAGCTTGTGGCTTTTGCAG 871
|||||||||||||||| || |||||||||||||||||||||||||||||||| || || |
Sbjct 839 AAGGGAAATGGGTTCACGCTTATATGATTAAATCCGGTGAAAAGCTTGTGGCCTTCGCGG 898
Query 872 GAAACACTCTTCTTGACATGTATGCGAAATCAGGAAGCATCCATGACGCGAGGAAAATAT 931
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 899 GAAACACTCTTCTTGACATGTATGCAAAATCAGGAAGCATCCATGACGCGAGGAAAATAT 958
Query 932 TCGATAGATTGGCTAAAAGGGATGTGGTGTCTTGGAACTCGCTGCTGACTGCTTACGCCC 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 959 TCGATAGATTGGCTAAAAGGGATGTGGTGTCTTGGAACTCGCTGCTGACTGCTTATGCCC 1018
Query 992 AACATGGATTTGGAAAAGAAGCAGTGTGCTGGTTCGAAGAAATGAGGAGGGGCGGGATTC 1051
|||||||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||
Sbjct 1019 AACATGGATTTGGAAAGGAAGCAGTGTGGTGGTTCGAGGAAATGAGGAGGGTTGGGATTC 1078
Query 1052 GTCCCAATGAAATCTCGTTTCTCTCAGTGCTTACAGCTTGCAGCCATTCTGGTCTTCTTG 1111
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1079 GCCCCAATGAAATCTCGTTTCTCTCTGTGCTTACAGCTTGCAGCCATTCTGGTCTTCTAG 1138
Query 1112 ATGAAGGATGGCATTACTATGAATTGATGAAGAAAGATGGGATAGTACTCGAGGCTTGGC 1171
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1139 ATGAAGGATGGCATTACTATGAATTGATGAAGAAAGATGGGATAGTTCCCGAGGCTTGGC 1198
Query 1172 ACTACGTCAC-GATCGTAGATCTTCTTGGGCGAGCCGGTGATCTTAATAGGGCACTGAGA 1230
|||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ACTACGTCACAG-TCGTAGACCTTCTTGGGCGAGCCGGTGATCTTAATAGGGCACTGAGA 1257
Query 1231 TTCATCGAAGAAATGCCAATAGAACCCACTGCAGCCATCTGGAAAGCTCTGCTTAATGCT 1290
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1258 TTCATTGAAGAAATGCCAATAGAACCCACTGCAGCCATCTGGAAAGCCCTGCTTAATGCT 1317
Query 1291 TGTAGAATGCATAAAAATACGGAATTGGGAGCTTATGCCGCTGAGCATGTATTTGAACTT 1350
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1318 TGTAGAATGCATAAGAATACGGAATTGGGAGCTTATGCGGCTGAGCATGTATTTGAACTT 1377
Query 1351 GACCCAGACGACCCTGGTCCCCATGTAATACTATATAACATCTATGCATCAGGTGGCAGA 1410
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1378 GACCCTGACGACCCTGGTCCCCATGTAATACTATATAACATCTATGCATCTGGTGGCAGA 1437
Query 1411 TGGAACGATGCTGCGAGAGTGAGAAAGAAGATGAAGGAAAGTGGAGTGAAGAAGGAACCT 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TGGAACGATGCTGCGAGAGTGAGAAAGAAGATGAAGGAAAGTGGAGTGAAGAAGGAACCT 1497
Query 1471 GCTTGCAGTTGGGTAGAGATTGAGAATGCAATCCATATGTTTGTGGCAAATGATGAACGT 1530
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1498 GCTTGCAGTTGGGTAGAGATTGAGAATGCAATCCACATGTTTGTGGCAAATGATGAACGT 1557
Query 1531 CATCCACAGAGGGAGGAGATTGCTCGGAAGTGGGAAGAGGTTTTAGCAAAGATCAAGGAG 1590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 CATCCACAGAGGGAGGAGATTGCTCGGAAGTGGGAAGAGGTTTTAGCAAAGATCAAGGAG 1617
Query 1591 TTGGGATATGTGCCCGACACTAGCCATGTAATAGTCCATGTGGATCAACAGGAGAGGGAA 1650
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TTGGGATATGTGCCAGACACTAGCCATGTAATAGTCCATGTGGATCAACAGGAGAGGGAA 1677
Query 1651 GTGAATTTACAATATCATAGTGAGAAAATTGCTTTGGCATTTGCGCTTCTCAACACCCCT 1710
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1678 GTGAATTTACAATATCATAGTGAGAAAATTGCGTTGGCGTTTGCGCTTCTCAACACTCCT 1737
Query 1711 CCTGGATCAACCATACACATCAAGAAAAACATCCGGGTTTGTGGGGATTGCCATTCAGCA 1770
||||||||||| |||||||||||||| |||||||| |||||||||||||||||| |||||
Sbjct 1738 CCTGGATCAACTATACACATCAAGAAGAACATCCGTGTTTGTGGGGATTGCCATACAGCA 1797
Query 1771 ATCAAGTTGGCGTCAAAGGCGGTTGGGAGGGAAATCATTGTGAGAGATACAAATCGGTTC 1830
|| |||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||
Sbjct 1798 ATAAAGTTGGCGTCAAAGGTGGTTGGGAGAGAAATCATTGTGAGAGATACTAATCGGTTC 1857
Query 1831 CATCATTTTAAGGATG 1846
|| |||||||||||||
Sbjct 1858 CACCATTTTAAGGATG 1873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92820807705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5