BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479938
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23950.1 | Symbols: | F-box family protein | chr3:8652908-8... 1820 0.0
AT3G23970.1 | Symbols: | F-box family protein | chr3:8660447-8... 1293 0.0
> AT3G23950.1 | Symbols: | F-box family protein | chr3:8652908-8654164
REVERSE LENGTH=1257
Length=1257
Score = 1820 bits (985), Expect = 0.0
Identities = 1150/1229 (94%), Gaps = 13/1229 (1%)
Strand=Plus/Plus
Query 10 GAAGTCTTGGTGAGACTTCCATTAAAGAGCCTTGCAAGATTCAGATCAGTGTGCAAAGAA 69
||||| |||||| |||||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 28 GAAGTTTTGGTGCGACTTCCATTGAAGAGCCTCGCAAGATTCAGATCAATGTGCAAAGAA 87
Query 70 TGGAAACTCCTGATCGACTCCGAATTCTTCCGAGATCGCTTCATGTCGCTCAACTCTTCC 129
|||||||| | |||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 88 TGGAAACTGGTCATCGACTCCGAATTCTTCCGAGATTGCTTCATGTCTCACAACTCTTCC 147
Query 130 TCAGTCTCATGGTCAATCATCCAAACGAGACCTCATAAACTGACACTCGAAATC-TTGGG 188
||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || ||
Sbjct 148 TCAGTCTCATGGTCAATCATCCAAACGAGACCTCACAAACTGACACTTGAAATCGTT-GG 206
Query 189 TCACCATGGATGCAAAACATGGGGACTAACTCGTTCTCCAGGATCTTTAGTGAGTTTCTT 248
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 207 TCACCATGGATGCAAAACATGGGGACTTACTCGTTCTCCCGGATCTTTAGTGAGTTTCTT 266
Query 249 TGCCGAGACCACAATCAGGAAACTACAAGTCTTAGCTTGTACCGATGGGTTGGTCCTTCT 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 TGCCGAGACCACAATCAGGAAACTACAAGTCTTAGCTTGTACCGATGGGTTGGTCCTTCT 326
Query 309 TTACGTAGAATCTAGCCATGGAACTCCTATGTATTACGTTGGTAATCCTTTGTTTCAAGA 368
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 TTACGTAGAATCTTGCGTTGGAACTCCTATGTATTACGTTGGTAATCCTTTGTTTCAAGA 386
Query 369 ATGGTTTCGAATCCCTCTCCGTCCTAAATACACTTCGCAATTTGTTGAGAGATTACGGAA 428
||||||||||||||||||||||||||||||||||| ||| |||||||| |||| ||||
Sbjct 387 GTGGTTTCGAATCCCTCTCCGTCCTAAATACACTTCTCAAAATGTTGAGAAATTAAGGAA 446
Query 429 CTACGAGCGTTTCAACGACGGTGGATTGGTTACAAAGATGCAGAGTGGTATTGTTGTGAG 488
| |||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 447 CCACGAGCGTTTCAGCGACAGTGGATTGGTTACAAAGATGCAAAGTGGTATTGTTGTGAG 506
Query 489 TTACAAGGTTGTGTGGTTGATCGCTCACGCTTTTGCT-AGAGTCGATTTTGGGATTTACT 547
|||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||
Sbjct 507 TTACAAGGTTGTGTGGTTGATCGCTCACACTTTTGCTCA-AGTCGATTTTGCGATTTACT 565
Query 548 CATCTGATACAGGGGAATGGGAAATTAGAAAA-GTGCCTTGTCTTCATTCTGCCT-TCTG 605
||||| | ||||||||||||||||||| |||| ||| |||||||||||||||||| | ||
Sbjct 566 CATCTAACACAGGGGAATGGGAAATTA-AAAATGTGACTTGTCTTCATTCTGCCTAT-TG 623
Query 606 GTTTAGTCATCACAAGCCCATTGCTTTAAATGGGATTCTTCATTGGCTTTCCAACCTCAC 665
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 GTTTAGTCATCACAAGTCCATTGCTTTAAATGGGATTCTTCATTGGCTTTCCAACCTCAC 683
Query 666 CGGTTCTTTTGTAGCTTACGATTTCTATGGAGGTCATAATGATGCGTGTAGTATCATGTA 725
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 684 CGGTTCTTTTTTAGCTTACGATTTCTATGGAGGTCATCATGATGCGTGTAGTATCATTTA 743
Query 726 TTTCCCCGACATTGCACAAGATTACGAGTTACCGCGTTTTAGGAGAACCATCACGACCTC 785
||||||||| | || | ||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 744 TTTCCCCGATAATGGAAAAGATTACGAGTTACCGCGTTTTCGGAGAACAATCACTACCTC 803
Query 786 GGAAGGGTCTATTGTGTATTTCAACGTGTTTGGTGGGAACGCAAACCGCAGATTACGGGT 845
|||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 804 GGAAGGGTCTATTGTGTATTTCAACGAGTTTGGTGGGAACGCAAACCGCAAAGTACGGGT 863
Query 846 TTGGAAGCTGGTCAAGTACACTGATGGTCCTGAGGCGTGGCAGCTCTTTTGGGAAGTCAG 905
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 864 TTGGAGGCTGGTCAAGTACACTGATGGTCCTGAGGCGTGGCAGCTCTTTTGGGAAGCCAG 923
Query 906 CTTGGTGTCTTTGATCAAGCTAGGTGTC-CTT--TACCCGGTAGTGATGCATCCTTTGAA 962
||||| |||| ||| |||||||||| || || | |||||| |||||||||||||||||
Sbjct 924 CTTGGCGTCTGTGACCAAGCTAGGTATCGATTACTTCCCGGTGGTGATGCATCCTTTGAA 983
Query 963 GTCTGAGATCATCTACTTGTGGAGCAGAGTCAAGAAAGGTATGGTCTTGTTTAACTTGAG 1022
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 984 GTCTGAGATCATCTACTTGTGGAGCAGAAACAAGAAAGGTATGGTCTTGTTTAACTTGAG 1043
Query 1023 GACACATAAGTTTAGTCTTCACAAGGAATCCGAAGACGAGAGGAAGTGTATGGATGGTTG 1082
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 GACGCATGTGTTTAGTCTTCACAAGGAATCCGAAGACGAGAGGAAGTGTATGGATGGTTG 1103
Query 1083 CACCTTGAGCTTTAACTGGTGCAACGAGTATATGGAGACCGTTCATAGAGACTTTTCCCC 1142
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1104 CACCTTGAGCTTTAACTGGTGCAACGAGTATATGGAGACCGTTCATAGATACTTTTCCCC 1163
Query 1143 ATCGTTTCAAGGTGGTCCTAACCTTCTCCTCGCTTCTCAATATGTTCTCCCTCGTTGGCT 1202
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct 1164 ATCGTTTCAAGGTGGTCCTAACCTTCTCCTCGCTTCACAGTATGTTCTCCCTCGTTGGTT 1223
Query 1203 G-CACCGTCTCCCTCGTCCGCAGCCTTCT 1230
| | ||||||||||||||| |||||||||
Sbjct 1224 GTC-CCGTCTCCCTCGTCCACAGCCTTCT 1251
> AT3G23970.1 | Symbols: | F-box family protein | chr3:8660447-8661688
REVERSE LENGTH=1242
Length=1242
Score = 1293 bits (700), Expect = 0.0
Identities = 1073/1246 (86%), Gaps = 53/1246 (4%)
Strand=Plus/Plus
Query 10 GAAGTCTTGGTGAGACTTCCATTAAAGAGCCTTGCAAGATTCAGATCAGTGT-GCAAAGA 68
||||| |||||| |||||||||| |||||||| ||||||||||||||||| | | |||||
Sbjct 28 GAAGTTTTGGTGCGACTTCCATTGAAGAGCCTCGCAAGATTCAGATCAGT-TAGGAAAGA 86
Query 69 ATGGAAACTCCTGATCGACTCCGAATTCTTCCGAGATCGCTTCATGTCGCTCAACTCTTC 128
||||||||| | |||||||||||||||||||||||| |||||||||| | |||||||||
Sbjct 87 ATGGAAACTGGTCATCGACTCCGAATTCTTCCGAGATTGCTTCATGTCTCACAACTCTTC 146
Query 129 CTCAGTCTCATGGTCAATCATCCAAACGAGACCTCATAAACTGACACTCGAAATC-TTGG 187
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || |
Sbjct 147 CTCAGTCTCATGGTCAATCATCCAAACGAGACCTCACAAACTGACACTTGAAATCGTT-G 205
Query 188 GTCACCATGGATGCAAAACATGGGGACTAACTCGTTCTCCAGGATCTTTAGTGAGTTTCT 247
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 206 GTCACCATGGATGCAAAACATGGGGACTTACTCGTTCTCCAGGATCTTTAGTGGGTTTCT 265
Query 248 TTGCCGAGACCACAATCAGGAAACTACAAGTCTTAGCTTGTACCGATGGGTTGGTCCTTC 307
||||||| |||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 266 TTGCCGACACCACAATCAAGAGACTACGAGTCTTAGCTTGTACCGATGGGTTGGTCCTTA 325
Query 308 TTTACGTAGAATCTAGCCATGGAACTCCTATGTATTACGTTGGTAATCCTTTGTTTCAAG 367
||||| |||| ||||| |||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 326 TTTACACAGAAACTAGCTATGGAACTCCAATGCATTACGTTGGTAATCCTCTGTTTCAAG 385
Query 368 AATGGTTTCGAATCCCTCTCCGTCCTAAATAC-ACTTCGCAATTTGTTGAGAGATTACGG 426
|||||| || ||||||||||| | || | | | | || |||| |||||||||| ||||
Sbjct 386 AATGGTGTCCAATCCCTCTCCCTTCTTACTTCTA-TTTGCAAAGTGTTGAGAGAATACGT 444
Query 427 AACT-ACGAGCGTTTCAACGACGGTGGATTGGTTACAAAGATGCAGAGTGGTATTGTTGT 485
|| | || |||||||||||||| ||| |||||||| |||||||||||||||| |||||
Sbjct 445 AA-TCACCAGCGTTTCAACGACAGTGCATTGGTTATAAAGATGCAGAGTGGTGCCGTTGT 503
Query 486 GAGTTACAAGGTTGTGTGGTTGATCGCTCACGCTTTTGCTA-GAGTCGA-TTTTGGGATT 543
|||||||||||||||||||||| || ||| | | | | | | |||| |||| ||||
Sbjct 504 GAGTTACAAGGTTGTGTGGTTGTTCCCTCGCAATAGTACAACCA-TCGACTTTT-TGATT 561
Query 544 TACTCATCTGATACAGGGGA-ATGGGAAATTAGAAAAGTGCCTTGTCTTCATTCTGCCTT 602
|||||||||||||| || | |||||| | ||| | | |||||||||||||| ||||
Sbjct 562 TACTCATCTGATAC-TGGCATGTGGGAAGCTCGAATTGCGACTTGTCTTCATTCTTCCTT 620
Query 603 CTGGTTTAGTCATCACAAGCCCATTGCTTTAAATGGGATTCTTCATTGGCTTTCCAACCT 662
||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||| |
Sbjct 621 CTGGTTTAGTCATCACAAGCCGATTGCTTTGAATGGGATTCTTCATTGGCTTTGCAATTT 680
Query 663 CACCGGTTCTTTTGTAGCTTACGATTTCTATGGAGGTCAT-A--ATGATGCGTGT-AGTA 718
|| | |||||||||||||||||||||||||||||||||| | || |||| ||| | ||
Sbjct 681 CAGCACTTCTTTTGTAGCTTACGATTTCTATGGAGGTCATGATGATTATGCATGTCA-TA 739
Query 719 TCATGTATTTCCCCGACAT-TGCACAAGAT--T-A-CGAGTTACCGCGTTTTAGGAGAAC 773
|||| | |||||| || | || | ||||| | | | |||||| ||||||||||||||
Sbjct 740 TCATATCTTTCCCTGA-TTGTGAAAAAGATGATGATC-AGTTACGGCGTTTTAGGAGAA- 796
Query 774 CA-TCACGACCTCGGAAGGGTCTATTGTGTATTTCAACGTGTTTGGTGGGAACGCAAACC 832
|| | |||||||||| ||||||||||| || ||||||| |||||||| ||||| |||||
Sbjct 797 CATTGTCGACCTCGGATGGGTCTATTGTCTACTTCAACGAGTTTGGTGAGAACGGAAACC 856
Query 833 GCAGATTACGGGTTTGGAAGCTGGTCAAGTACACTGATGGTCCTGAGGCGTGGCAGCTCT 892
| |||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 857 GAAGATTACGTGTTTGGAGGCTGGTCAAGTACACTGGTGGTCCTGAGGCGTGGCAGCTCT 916
Query 893 TTTGGGAAGTCAGCTTGGTGTCTTTGATCAAGCTAGGTGTC-CTT--TACCCGGTAGTGA 949
|||||||||||||||||| |||| ||| |||||||||| || || | |||||| ||||
Sbjct 917 TTTGGGAAGTCAGCTTGGCGTCTGTGACCAAGCTAGGTATCGATTACTTCCCGGTGGTGA 976
Query 950 TGCATCCTTTGAAGTCTGAGATCATCTACTTGTGGAGCAGAGTCAAGAAAGGTATGGTCT 1009
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 977 TGCATCCTTTGAAGTCTGAGATCATCTACTTGTGGAGCAGAAACAAGAAAGGTATGGTTT 1036
Query 1010 TGTTTAACTTGAGGAC-ACATAAGTTTAGTCTTCACAAGGAATCCGAAGACGAGAGGAAG 1068
|||||||||||||||| | || |||||||||||||||||||||||| ||||||| |||
Sbjct 1037 TGTTTAACTTGAGGACTA-ATGTGTTTAGTCTTCACAAGGAATCCGAGGACGAGACCAAG 1095
Query 1069 TGTATGGATGGTTGCACCTTGAGCTTTAACTGGTGCAACGAGTATATGGAGACCGTTCAT 1128
|||||||||||||||||||||||||||||| |||||| ||||||||||||||| | |||
Sbjct 1096 TGTATGGATGGTTGCACCTTGAGCTTTAACAGGTGCAGCGAGTATATGGAGACTATCCAT 1155
Query 1129 AGAGACTTTTCCCCATCGTTTCAAGGTGGTCCTAACCT-TCTCCTCGCTTCTCAATATGT 1187
| | || || | | |||||||||| | |||||||||||| || |||||
Sbjct 1156 A-A--CT-------AT-G------G-TGGTCCTAAC-TATCTCCTCGCTTCACAGTATGT 1196
Query 1188 TCTCCCTCGTTGGCTGCACCGTCTCCCTCGTCCGCAGCCTTCTTAG 1233
||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TCTTCCTCGTTGGCTGCACCGTCTCCCTCGTCCGCAGCCTTCTTAG 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60592057815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5