BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479939
Length=886
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1262 0.0
> AT3G23930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: hypocotyl; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G13540.1); Has 10639 Blast hits to
7432 proteins in 646 species: Archae - 82; Bacteria - 826;
Metazoa - 5047; Fungi - 759; Plants - 314; Viruses - 86; Other
Eukaryotes - 3525 (source: NCBI BLink). | chr3:8646892-8647908
FORWARD LENGTH=944
Length=944
Score = 1262 bits (683), Expect = 0.0
Identities = 825/891 (93%), Gaps = 19/891 (2%)
Strand=Plus/Plus
Query 1 GAGAGGGTCTCTATATCATAAATAAAACAAGAACATAGCTTTCAGAGAGAGATAGAGTGA 60
|||||| ||| || ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 7 GAGAGGCTCTTTACATCATAAATAAAACAAGAACACAGCTTTC--AGAGAGATAGAGTGA 64
Query 61 GATTCTCCTTCATTAACATATTCTTCTACATGTTATaaaaaaaaaGACGAAGAAGTGT-C 119
||||||||||||||||||||||||||| |||||||| || || |||| |||||||||| |
Sbjct 65 GATTCTCCTTCATTAACATATTCTTCTTCATGTTAT-AAGAAGAAGAAGAAGAAGTGTCC 123
Query 120 TAAAGGAGTAGAGATGGGAGGATGCACAAGCAAGCAAGAGAGAAGAAGTATGAGAAGTGT 179
|||||| |||||||||| ||||||||||||||||||||||| ||| || ||||||||||
Sbjct 124 AAAAGGATTAGAGATGGGTGGATGCACAAGCAAGCAAGAGAGGAGAGGTGTGAGAAGTGT 183
Query 180 GAAGGAGACATCAAAAGACCAAAGCAGAGGAAGAAGAC-CTTTGATAAAagagagagatg 238
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 184 GAAGGAGACATCAAAAGACCAAAGCAGAGGAAGAAGACAC-CTGATAAAAGAGAGAGATG 242
Query 239 agaag-gagagagTGATGTTTGATCAACTTagagaggcggaaagacagtggaggaaagag 297
|| || |||| |||||||||| ||| |||| ||||||||| ||| ||||||| ||||||
Sbjct 243 AG-AGAGAGAAAGTGATGTTTCTTCAGCTTAAAGAGGCGGAGAGAGAGTGGAGAAAAGAG 301
Query 298 aggaagaagctgagagaggaagtgaggagactaaggaagaaactagaggaaagagaggaa 357
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 302 AGGAAGAAGCTGAGAGAGGAAGTGAGAAGACTAAGGAAGAAGCTAGAGGAAAGAGAAGAA 361
Query 358 gcaaagaCAACAACATCAGAGGAAAGAGAGTATTGGAAGTGGGTAGTTGAGGAGATGTGT 417
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 362 GCAAAGACAACAACAACAGAGGAAAGAGAGTATTGGAAGTGGGTGGTTGAGGAGATGTGT 421
Query 418 GTAGAGAGAGCAGTGAGAGATGAAGCCATTGAGAAATGGAAACAACTCTATTTGGCTATC 477
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 422 GTAGAGAGAGCAGTGAGAGATGAAGCCGTTGAGAAATGGAAACAACTCTATTTAGCTATC 481
Query 478 AAGAATGAGCTTGATCATCTCATCACCCACACTACTTCTTCCTCCGGAGAAGCAATGATG 537
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 482 AAGAATGAGCTTGATCATCTCATCTCCCACACTACTTCTTCCTCCGGAGAAGCAATCATG 541
Query 538 Caaaggaaacttgaggaacaagaagaagaagaaaaagaagcaaagacagttgaagaactg 597
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||
Sbjct 542 CAAAGGAAACTTGAGGAACAAGAAGAAGAAGAAACAGAAGCAAAGAGAGTTGAAGTATTG 601
Query 598 agagatgaagttagagttaaagaagagaCAATTGAGACACTTCAAGAGAAAATAGTTTTG 657
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 602 AGAGATGAAGTTAGAGTTAAAGAAGAGACAGTTGAGACACTTGAAGAGCAAATAGTTTTG 661
Query 658 ATGGATAGACAAAAGTATGAGAAAGAAAGAGAGATTGA-TATATTGAGACAGAGTTTGAG 716
|||||||||||||||||||||||||||||||||||||| | |||||||||||||| | ||
Sbjct 662 ATGGATAGACAAAAGTATGAGAAAGAAAGAGAGATTGACT-TATTGAGACAGAGTCTAAG 720
Query 717 GATTCTTGGAAGCAATAATAAGAAGAAGAAGACAGGATCATTTGCATCAATGAATCTGTT 776
||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 721 GATTCTTGGAAGC---AAGAAGAAAAAGAAGACAGGATCATTCGCATCAATGAATCTGTT 777
Query 777 GATATTGAAGACCAAATGTGTCGAATGTACATAAACAAACACTTGTAGTCAAATAGTCTT 836
||||||||||||||||||||||||||||||||||||| | || || ||||||||||||
Sbjct 778 GATATTGAAGACCAAATGTGTCGAATGTACATAAACA--CTTTT-TACTCAAATAGTCTT 834
Query 837 CTGCAA-CAGTCATATCACTCGTCAGAGAATCTTGATCCACAATGTCATAT 886
|||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 835 CTGCAAACAGTCATATC--TCGTCAGAGAATCTTGATCCACAATGTCATAT 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43251600567
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5