BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479939 Length=886 Score E Sequences producing significant alignments: (Bits) Value AT3G23930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1262 0.0 > AT3G23930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13540.1); Has 10639 Blast hits to 7432 proteins in 646 species: Archae - 82; Bacteria - 826; Metazoa - 5047; Fungi - 759; Plants - 314; Viruses - 86; Other Eukaryotes - 3525 (source: NCBI BLink). | chr3:8646892-8647908 FORWARD LENGTH=944 Length=944 Score = 1262 bits (683), Expect = 0.0 Identities = 825/891 (93%), Gaps = 19/891 (2%) Strand=Plus/Plus Query 1 GAGAGGGTCTCTATATCATAAATAAAACAAGAACATAGCTTTCAGAGAGAGATAGAGTGA 60 |||||| ||| || ||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 7 GAGAGGCTCTTTACATCATAAATAAAACAAGAACACAGCTTTC--AGAGAGATAGAGTGA 64 Query 61 GATTCTCCTTCATTAACATATTCTTCTACATGTTATaaaaaaaaaGACGAAGAAGTGT-C 119 ||||||||||||||||||||||||||| |||||||| || || |||| |||||||||| | Sbjct 65 GATTCTCCTTCATTAACATATTCTTCTTCATGTTAT-AAGAAGAAGAAGAAGAAGTGTCC 123 Query 120 TAAAGGAGTAGAGATGGGAGGATGCACAAGCAAGCAAGAGAGAAGAAGTATGAGAAGTGT 179 |||||| |||||||||| ||||||||||||||||||||||| ||| || |||||||||| Sbjct 124 AAAAGGATTAGAGATGGGTGGATGCACAAGCAAGCAAGAGAGGAGAGGTGTGAGAAGTGT 183 Query 180 GAAGGAGACATCAAAAGACCAAAGCAGAGGAAGAAGAC-CTTTGATAAAagagagagatg 238 |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 184 GAAGGAGACATCAAAAGACCAAAGCAGAGGAAGAAGACAC-CTGATAAAAGAGAGAGATG 242 Query 239 agaag-gagagagTGATGTTTGATCAACTTagagaggcggaaagacagtggaggaaagag 297 || || |||| |||||||||| ||| |||| ||||||||| ||| ||||||| |||||| Sbjct 243 AG-AGAGAGAAAGTGATGTTTCTTCAGCTTAAAGAGGCGGAGAGAGAGTGGAGAAAAGAG 301 Query 298 aggaagaagctgagagaggaagtgaggagactaaggaagaaactagaggaaagagaggaa 357 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| Sbjct 302 AGGAAGAAGCTGAGAGAGGAAGTGAGAAGACTAAGGAAGAAGCTAGAGGAAAGAGAAGAA 361 Query 358 gcaaagaCAACAACATCAGAGGAAAGAGAGTATTGGAAGTGGGTAGTTGAGGAGATGTGT 417 ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 362 GCAAAGACAACAACAACAGAGGAAAGAGAGTATTGGAAGTGGGTGGTTGAGGAGATGTGT 421 Query 418 GTAGAGAGAGCAGTGAGAGATGAAGCCATTGAGAAATGGAAACAACTCTATTTGGCTATC 477 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 422 GTAGAGAGAGCAGTGAGAGATGAAGCCGTTGAGAAATGGAAACAACTCTATTTAGCTATC 481 Query 478 AAGAATGAGCTTGATCATCTCATCACCCACACTACTTCTTCCTCCGGAGAAGCAATGATG 537 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 482 AAGAATGAGCTTGATCATCTCATCTCCCACACTACTTCTTCCTCCGGAGAAGCAATCATG 541 Query 538 Caaaggaaacttgaggaacaagaagaagaagaaaaagaagcaaagacagttgaagaactg 597 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | || Sbjct 542 CAAAGGAAACTTGAGGAACAAGAAGAAGAAGAAACAGAAGCAAAGAGAGTTGAAGTATTG 601 Query 598 agagatgaagttagagttaaagaagagaCAATTGAGACACTTCAAGAGAAAATAGTTTTG 657 |||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| Sbjct 602 AGAGATGAAGTTAGAGTTAAAGAAGAGACAGTTGAGACACTTGAAGAGCAAATAGTTTTG 661 Query 658 ATGGATAGACAAAAGTATGAGAAAGAAAGAGAGATTGA-TATATTGAGACAGAGTTTGAG 716 |||||||||||||||||||||||||||||||||||||| | |||||||||||||| | || Sbjct 662 ATGGATAGACAAAAGTATGAGAAAGAAAGAGAGATTGACT-TATTGAGACAGAGTCTAAG 720 Query 717 GATTCTTGGAAGCAATAATAAGAAGAAGAAGACAGGATCATTTGCATCAATGAATCTGTT 776 ||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||| Sbjct 721 GATTCTTGGAAGC---AAGAAGAAAAAGAAGACAGGATCATTCGCATCAATGAATCTGTT 777 Query 777 GATATTGAAGACCAAATGTGTCGAATGTACATAAACAAACACTTGTAGTCAAATAGTCTT 836 ||||||||||||||||||||||||||||||||||||| | || || |||||||||||| Sbjct 778 GATATTGAAGACCAAATGTGTCGAATGTACATAAACA--CTTTT-TACTCAAATAGTCTT 834 Query 837 CTGCAA-CAGTCATATCACTCGTCAGAGAATCTTGATCCACAATGTCATAT 886 |||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 835 CTGCAAACAGTCATATC--TCGTCAGAGAATCTTGATCCACAATGTCATAT 883 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43251600567 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5