BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479942
Length=1592
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24300.1 | Symbols: AMT1;3, ATAMT1;3 | ammonium transporter ... 2473 0.0
AT3G24290.1 | Symbols: AMT1;5 | ammonium transporter 1;5 | chr3... 1663 0.0
> AT3G24300.1 | Symbols: AMT1;3, ATAMT1;3 | ammonium transporter
1;3 | chr3:8805631-8807388 REVERSE LENGTH=1758
Length=1758
Score = 2473 bits (1339), Expect = 0.0
Identities = 1490/1564 (95%), Gaps = 6/1564 (0%)
Strand=Plus/Plus
Query 1 tctctctttctctctctcagctctctcAAACATGGCAGGAGCTATAACATGCTCTGCGGC 60
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 4 TCTCTCTTTCTCTCTCTCAGCTCTCTCAAACATGTCAGGAGCAATAACATGCTCTGCGGC 63
Query 61 CGATCTCGCCACCCTACTTGGTCCCAACGCCACCGCGGCGGCCGACTACATTTGCAGCCA 120
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||
Sbjct 64 CGATCTCGCCACCCTACTTGGCCCCAACGCCACGGCGGCGGCCGACTACATTTGCGGCCA 123
Query 121 GTTAGGTACCGTTAACAACAAGTTCACCGATGCAGCCTTTGCCATCGACAACACATACCT 180
||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 124 ATTAGGCACCGTTAACAACAAGTTCACCGATGCAGCCTTCGCCATAGACAACACCTACCT 183
Query 181 CCTCTTCTCTGCCTACCTTGTCTTCTCCATGCAGCTCGGCTTCGCTATGCTTTGCGCTGG 240
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 184 CCTCTTCTCTGCCTACCTTGTCTTCGCCATGCAGCTCGGCTTCGCTATGCTTTGTGCTGG 243
Query 241 CTCCGTTAGAGCCAAGAATACGATGAACATCATGCTTACCAATGTTCTTGATGCTGCAGC 300
|| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 244 TTCTGTTAGAGCCAAGAATACGATGAACATCATGCTTACCAATGTCCTTGACGCTGCAGC 303
Query 301 CGGAGGACTCTTTTACTATCTCTTTGGTTACGCCTTTGCCTTCGGCGGATCTTCCGAAGG 360
|||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 304 CGGAGGACTCTTCTACTATCTCTTTGGTTACGCCTTTGCCTTTGGAGGATCCTCCGAAGG 363
Query 361 ATTCATTGGAAGACACAACTTTGCTCTTAGAGACTTCCCGACTCCCACAGCTGATTACTC 420
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 364 GTTCATTGGAAGACACAACTTTGCTCTTAGAGACTTTCCGACTCCCACAGCTGATTACTC 423
Query 421 TTTCTTCCTCTATCAATGGGCGTTCGCAATCGCGGCCGCTGGAATCACAAGTGGTTCCAT 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 424 TTTCTTCCTCTACCAATGGGCGTTCGCAATCGCGGCCGCTGGAATCACAAGTGGTTCGAT 483
Query 481 AGCGGAGAGGACTCAGTTCGTGGCTTACTTGATATACTCTTCTTTCTTAACCGGATTTGT 540
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 CGCAGAGAGGACTCAGTTCGTGGCTTACTTGATATACTCTTCTTTCTTAACCGGATTTGT 543
Query 541 TTACCCTATTGTCTCTCACTGGTTTTGGTCCCCGGATGGATGGGCCAGTCCCTTCCGTTC 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 544 TTACCCGGTTGTCTCTCACTGGTTTTGGTCCCCGGATGGATGGGCCAGTCCCTTTCGTTC 603
Query 601 AGCGGAAGATCGTTTGTTTAGCACCGGAGCCATCGACTTTGCTGGCTCCGGAGTTGTTCA 660
|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 604 AGCGGATGATCGTTTGTTTAGCACCGGAGCCATTGACTTTGCTGGCTCCGGTGTTGTTCA 663
Query 661 CATGGTTGGTGGCATAGCAGGTTTGTGGGGTGCTCTTATCGAAGGTCCTCGTCGTGGTAG 720
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
Sbjct 664 CATGGTTGGTGGCATAGCAGGTTTATGGGGTGCTCTTATTGAAGGTCCTCGTCGTGGTCG 723
Query 721 GTTCGAGAAAGGTGGTCGCGCTATTGCTCTGCGCGGCCACTCTGCCTCGCTTGTAGTGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 724 GTTCGAGAAAGGTGGTCGCGCTATTGCTCTGCGCGGCCACTCTGCCTCGCTAGTAGTCTT 783
Query 781 AGGAACCTTCCTCCTATGGTTCGGCTGGTATGGTTTCAACCCGGGTTCCTTCACTAAGAT 840
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 784 AGGAACCTTCCTCCTATGGTTTGGATGGTATGGTTTCAACCCCGGTTCCTTCACTAAGAT 843
Query 841 ACTCGTTCCGTATAATTCTGGTTCCAACTACGGCCAATGGAGCGGAATTGGCCGCACAGC 900
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 844 ACTCGTTCCGTATAATTCTGGTTCCAACTACGGCCAATGGAGCGGAATCGGCCGTACAGC 903
Query 901 GGTTAACACCACACTCTCAGGATGCACCGCAGCTCTAACCACACTCTTTGGTAAACGTCT 960
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 904 GGTTAACACCACACTCTCAGGATGCACAGCAGCTCTAACCACACTCTTTGGTAAACGTCT 963
Query 961 TCTATCAGGCCACTGGAACGTAACGGACGTTTGCAACGGGTTACTCGGTGGATTTGCGGC 1020
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 964 CCTATCAGGCCACTGGAACGTAACGGACGTTTGCAACGGGTTACTCGGTGGGTTTGCGGC 1023
Query 1021 CATAACCGCAGGTTGCTCCGTGGTAGAGCCATGGGCAGCTATCGTCTGCGGCTTCATGGC 1080
||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||
Sbjct 1024 CATAACCGCAGGTTGCTCCGTCGTAGAGCCATGGGCAGCGATTGTGTGCGGCTTCATGGC 1083
Query 1081 TTCCCTCGTTCTTATCGGATGCAACAAGCTCGCGGAGCTCGTACAATATGATGATCCACT 1140
||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1084 TTCTGTCGTCCTTATCGGATGCAACAAGCTCGCGGAGCTTGTACAATATGATGATCCACT 1143
Query 1141 CGAGGCGGCCCAACTACACGGAGGGTGTGGCGCGTGGGGGTTGATATTTGTAGGATTGTT 1200
|||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1144 CGAGGCAGCCCAACTACATGGAGGGTGTGGCGCGTGGGGGTTGATATTCGTAGGATTGTT 1203
Query 1201 TGCCAAAGAGAAGTATCTAAACGAGGTTTATGGCACCACCCCGGGAAGGCCCTATGGACT 1260
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1204 TGCCAAAGAGAAGTATCTAAACGAGGTTTATGGCGCCACCCCGGGAAGGCCATATGGACT 1263
Query 1261 ATTTATGGGCGGAGGAGGGAAGCTGTTGGGAGCACAATTGGTTCAAATACTTGTGATTGC 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 ATTTATGGGCGGAGGAGGGAAGCTGTTGGGAGCACAATTGGTTCAAATACTTGTGATTGT 1323
Query 1321 GGGATGGGTTAGTGCCACAATGGGAACACTCTTCTTCATCCTCAAAAAACTCAATCTGCT 1380
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1324 AGGATGGGTTAGTGCCACAATGGGAACACTCTTCTTCATCCTCAAAAGGCTCAATCTGCT 1383
Query 1381 TAGGATCTCGGAGCAGCATGAAATGCAAGGAATGGATATGACACGTCACGGTGGCTTTGC 1440
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1384 TAGGATCTCGGAGCAGCATGAAATGCAAGGGATGGATATGACACGTCACGGTGGCTTTGC 1443
Query 1441 TTATATCTACCATGATAATAATGATGACGATTCTCATAGAGTGGGTCCTGGATCTCCTTT 1500
||||||||||||||||||| ||||||| | | |||||||||||| |||||||||||||||
Sbjct 1444 TTATATCTACCATGATAATGATGATGA-G-T-CTCATAGAGTGGATCCTGGATCTCCTTT 1500
Query 1501 CCCTCGGTCGGTTACTCCTCCTCGCGTTTAATTTTCAAGCTTTT-G-TAATTTATTACCG 1558
|||||| || | |||||||||||||||||||||||||| ||||| | |||||||||||||
Sbjct 1501 CCCTCGATCAGCTACTCCTCCTCGCGTTTAATTTTCAA-CTTTTTGGTAATTTATTACCG 1559
Query 1559 TTTA 1562
||||
Sbjct 1560 TTTA 1563
> AT3G24290.1 | Symbols: AMT1;5 | ammonium transporter 1;5 | chr3:8801400-8802890
REVERSE LENGTH=1491
Length=1491
Score = 1663 bits (900), Expect = 0.0
Identities = 1266/1444 (88%), Gaps = 19/1444 (1%)
Strand=Plus/Plus
Query 32 ATGGCAGGAGCTATAACATGCTCTGCGGCCGATCTCGCCA-CCCTACTTGGTCCC-AACG 89
||| |||||||||| || ||||||||||| |||||| || ||||||| || ||| || |
Sbjct 1 ATGTCAGGAGCTATTACTTGCTCTGCGGCTGATCTC-TCAGCCCTACTCGG-CCCAAATG 58
Query 90 CCACCGCGGCGGCCGACTACATTTGCAGCCAGTTAGGTACCGTTAACAACAAGTTCACCG 149
|||| || ||||| |||||||||||| ||||||| ||| |||||||||||||||| ||||
Sbjct 59 CCACGGCAGCGGCTGACTACATTTGCGGCCAGTTGGGTTCCGTTAACAACAAGTTTACCG 118
Query 150 ATGCAGCCTTTGCCATCGACAACACATACCTCCTCTTCTCTGCCTACCTTGTCTTCT-CC 208
||||||||| || || |||||||| |||||||||||||||||||| |||||||| | |
Sbjct 119 ATGCAGCCTACGCTATAGACAACACGTACCTCCTCTTCTCTGCCTATCTTGTCTT-TGCG 177
Query 209 ATGCAGCTCGGCTTCGCTATGCTTTGCGCTGGCTCCGTTAGAGCCAAGAATACGATGAAC 268
|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 178 ATGCAGCTCGGCTTCGCTATGCTTTGTGCTGGCTCCGTTAGAGCTAAGAACACGATGAAC 237
Query 269 ATCATGCTTACCAATGTTCTTGATGCTGCAGCCGGAGGACTCTTTTACTATCTCTTTGGT 328
|||||||| || ||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 238 ATCATGCTCACTAATGTCCTTGATGCTGCAGCCGGAGGACTCTTCTACTACCTCTTTGGT 297
Query 329 TACGCCTTTGCCTTCGGCGGATCTTCCGAAGGATTCATTGGAAGACACAACTTTGCTCTT 388
|| || |||||||| || | ||| ||||| ||||||||||||||||||||||||| ||||
Sbjct 298 TATGCATTTGCCTTTGGTGAATCCTCCGATGGATTCATTGGAAGACACAACTTTGGTCTT 357
Query 389 -AGAGACTTCCCGACTCCCACAGCTGATTACTCTTTCTTCCTCTATCAATGGGCGTTCGC 447
| | |||| ||||||| ||| | |||||||| ||||||||||| ||||||||||| ||
Sbjct 358 CA-AAACTTTCCGACTCTCACCTCGGATTACTCCTTCTTCCTCTACCAATGGGCGTTTGC 416
Query 448 AATCGCGGCCGCTGGAATCACAAGTGGTTCCATAGCGGAGAGGACTCAGTTCGTGGCTTA 507
|||||| |||||||||||||| || || ||||| || ||||||||| |||||||||| ||
Sbjct 417 AATCGCAGCCGCTGGAATCACCAGCGGCTCCATTGCCGAGAGGACTAAGTTCGTGGCGTA 476
Query 508 CTTGATATACTCTTCTTTCTTAACCGGATTTGTTTACCCTA-TTGTCTCTCACTGGTTTT 566
||||||||||||||||| || ||||| ||||||||||| | |||||||||||||||| |
Sbjct 477 TTTGATATACTCTTCTTTTTTGACCGGGTTTGTTTACCC-AGTTGTCTCTCACTGGTTCT 535
Query 567 GGTCCCCGGATGGATGGGCCAGTCCCTTCCGTTCAGCGGAAGATCGTTTGTTTAGCACCG 626
|||| |||||||||||||| ||||||||||||||| ||||| ||||||||| |||| |
Sbjct 536 GGTCTCCGGATGGATGGGCTAGTCCCTTCCGTTCA---GAAGACCGTTTGTTTGGCACTG 592
Query 627 GAGCCATCGACTTTGCTGGCTCCGGAGTTGTTCACATGGTTGGTGGCATAGCAGGTTTGT 686
||||||||||||||||||| || || |||||||||||||||||||| || ||||| || |
Sbjct 593 GAGCCATCGACTTTGCTGGGTCAGGTGTTGTTCACATGGTTGGTGGTATCGCAGGATTAT 652
Query 687 GGGGTGCTCTTATCGAAGGTCCTCGTCGTGGTAGG-TTCGAGAAAGGTGGTCGCGCTATT 745
||||||| ||||| ||||| ||||| |||| || ||| | | || |||| ||||||
Sbjct 653 GGGGTGCCCTTATTGAAGGCCCTCGGATTGGTCGGTTTCCTG-ATGGGGGTCATGCTATT 711
Query 746 GCTCTGCGCGGCCACTCTGCCTCGCTTGTAGTGTTAGGAACCTTCCTCCTATGGTTCGGC 805
|||||||| |||||||||||||| || || || ||||| |||||||| || ||||| ||
Sbjct 712 GCTCTGCGAGGCCACTCTGCCTCACTCGTCGTCTTAGGGACCTTCCTTCTCTGGTTTGGT 771
Query 806 TGGTATGGTTTCAACCCGGGTTCCTTCACTAAGATACTCGTTCCGTATAATTCTGGTTCC 865
||||| || |||||||| ||||||||||| ||||||||| |||| || ||||||||||||
Sbjct 772 TGGTACGGGTTCAACCCTGGTTCCTTCACCAAGATACTCATTCCCTACAATTCTGGTTCC 831
Query 866 AACTACGGCCAATGGAGCGGAATTGGCCGCACAGCGGTTAAC-ACCACACTCTCAGGATG 924
||||| ||||||||||| ||||| |||||||| |||||| || || |||||||| |||||
Sbjct 832 AACTATGGCCAATGGAGTGGAATAGGCCGCACCGCGGTT-ACAACTACACTCTCGGGATG 890
Query 925 CACCGCAGCTCTAACCACACTCTTTGGTAAACGTCTTCTATCAGGCCACTGGAACGTAAC 984
||| || ||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 891 CACAGCGGCTCTAACCACACTCTTCGGAAAACGTCTCCTATCAGGCCACTGGAACGTAAC 950
Query 985 GGACGTTTGCAACGGGTTACTCGGTGGATTTGCGGCCATAACCGCAGGTTGCTCCGTGGT 1044
||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||
Sbjct 951 TGACGTTTGCAACGGGTTACTCGGAGGGTTTGCGGCCATAACGGCAGGTTGCTCTGTGGT 1010
Query 1045 AGAGCCATGGGCAGCTATCGTCTGCGGCTTCATGGCTTCCCTCGTTCTTATCGGATGCAA 1104
|| ||||||||||| ||||| || |||||| ||||||||||||| ||||||||||||||
Sbjct 1011 TGATCCATGGGCAGCGATCGTATGTGGCTTCGTGGCTTCCCTCGTCCTTATCGGATGCAA 1070
Query 1105 CAAGCTCGCGGAGCTCGTACAATATGATGATCCACTCGAGGCGGCCCAACTACACGGAGG 1164
||||||||| |||||| || ||||||| |||||||| ||||| || ||||||||||||||
Sbjct 1071 CAAGCTCGCAGAGCTCTTAAAATATGACGATCCACTTGAGGCCGCACAACTACACGGAGG 1130
Query 1165 GTGTGGCGCGTGGGGGTTGATATTTGTAGGATTGTTTGCCAAAGAGAAGTATCTAAACGA 1224
|||||| || ||||| ||||||||||||||| ||||||| |||||||||||| |||| ||
Sbjct 1131 GTGTGGTGCTTGGGGTTTGATATTTGTAGGACTGTTTGCAAAAGAGAAGTATATAAATGA 1190
Query 1225 GGTTTATGGCACCACCCCGGGAAGGCCCTATGGACTATTTATGGGCGGAGGAGGGAAGCT 1284
|||||| ||| | | ||| ||||||| ||| || ||||||||||||||||||||||||||
Sbjct 1191 GGTTTACGGCGCGAGCCCAGGAAGGCACTACGGGCTATTTATGGGCGGAGGAGGGAAGCT 1250
Query 1285 GTTGGGAGCACAATTGGTTCAAATACTTGTGATTGCGGGATGGGTTAGTGCCACAATGGG 1344
|||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1251 ATTGGGAGCACAACTGGTTCAAATAATTGTGATTGTTGGATGGGTTAGTGCCACAATGGG 1310
Query 1345 AACACTCTTCTTCATCCTCAAAAAACTCAATCTGCTTAGGATCTCGGAGCAGCATGAAAT 1404
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1311 AACACTCTTCTTCATCCTCAAAAAGCTCAATTTGCTTAGGATCTCGGAGCAGCATGAAAT 1370
Query 1405 GCAAGGAATGGATAT-GACACGTCACGGTGGCTTTGCTTATATCTACCATGATAATAATG 1463
|| |||||||||| | | || |||| ||||| |||||||||||||||||||||||| |||
Sbjct 1371 GCGAGGAATGGATTTAG-CAGGTCATGGTGGTTTTGCTTATATCTACCATGATAATGATG 1429
Query 1464 ATGA 1467
||||
Sbjct 1430 ATGA 1433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78614053470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5