BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479944
Length=1043
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24310.1 | Symbols: MYB305, ATMYB71 | myb domain protein 305... 1555 0.0
> AT3G24310.1 | Symbols: MYB305, ATMYB71 | myb domain protein 305
| chr3:8811131-8812364 REVERSE LENGTH=1049
Length=1049
Score = 1555 bits (842), Expect = 0.0
Identities = 980/1044 (94%), Gaps = 19/1044 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaaaCTAAGAAGAAAGAATGAGTTTGTGGGGAGTGATGGGAGGAGGATGGGGAAT 60
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 13 AAAAAAAAACTAAGAAGAAATAATGAGTTTGTGGGGAGGGATGGGAGGAGGATGGGGAAT 72
Query 61 GGTAGAAGAAGGTTGGAGAAAAGGGCCTTGGACTGCTGGAGAAGACCGCCTTTTGATCGA 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 73 GGTAGAAGAAGGTTGGAGAAAAGGGCCTTGGACTGCTGAAGAAGACCGCCTTTTGATCGA 132
Query 121 TTATGTGCGGCTTCACGGCGAAGGCCGATGGAACTCTGTGGCTAGACTCGCCGGGTTGAA 180
|||||||| ||||||||| ||||| |||||||||||||| || || ||||| ||||||||
Sbjct 133 TTATGTGCAGCTTCACGGTGAAGGGCGATGGAACTCTGTTGCGAGGCTCGCGGGGTTGAA 192
Query 181 GAGAAATGGGAAAAGCTGTAGGTTAAGATGGGTTAACTACTTAAGACCAGACCTCAAGAG 240
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 193 GAGAAATGGGAAAAGCTGCAGGTTAAGATGGGTTAACTACCTAAGACCAGACCTCAAGAG 252
Query 241 AGGACAAATCACTCCTCATGAAGAAACCATTATCCTTGAGTTACATGCTAAGTGGGGCAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 AGGACAAATCACTCCTCATGAAGAAACCATTATCCTTGAGTTACATGCTAAGTGGGGCAA 312
Query 301 TAGGTGGTCCACAATTGCACGTAGTTTACCGGGAAGAACAGACAACGAAATCAAGAACTA 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 TAGGTGGTCCACGATTGCACGTAGTTTACCGGGAAGAACAGACAACGAAATCAAGAACTA 372
Query 361 TTGGCGAACCCATTTCAAGAAGAAGACAAAGTCTCCAACTAACAATGCGGAAAAGACGAA 420
||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| ||
Sbjct 373 TTGGCGAACCCATTTCAAGAAGAAGACGAAGTCTCCAACTAACAGTGCGGAGAAGACAAA 432
Query 421 GAACCGAATCTTGAAGAGGCAACAATTTCAGCAGCAAAGACAAATGGAGTTGCAGCAAGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 GAACCGAATCTTGAAGAGGCAACAATTTCAGCAGCAAAGACAAATGGAGTTGCAGCAAGA 492
Query 481 ACAACAGTTGCTTCAATTCAATCAAATCGACATGAAAAAGATCATGTCTTTACTAGACGA 540
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 493 ACAACAGTTGCTTCAATTCAATCAAATCGACATGAAAAAGATCATGTCGTTACTAGATGA 552
Query 541 CGACAACAACAACAATGGTGATAATAATACCTTCAGCAGTAGCAGTAGCGGCAGCAGCGG 600
|||||||||||| ||||||||| | ||||||||||||||||||| ||| | |
Sbjct 553 CGACAACAACAA---TGGTGATAACA---CCTTCAGCAGTAGCAGTAGTGGC-G-A---- 600
Query 601 TGAAGGTGGTGCGTTCTATGTGCCTCATCAGATCACACATTCAACAACAACTTCTGGTTG 660
||| ||| || || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 601 --AAG-TGGAGCATTATATGTACCTCATCAGATCACACATTCAACAACAACTTCTGGTTG 657
Query 661 TGACCCAAATAGTAACGGGTACTACCCTGTGGTTCCGGTGACAATGCCTGAGGCTAACGT 720
||| ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||
Sbjct 658 TGAACCAAATAGTAACGGGTATTACCCGGTGGTTCCGGTAACAATACCTGAGGCTAATGT 717
Query 721 GAATGAAGATAACGCTATTTGGGACAATTTATGGAATGTGGATTTTGAAGGACAAGGAAG 780
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 718 GAATGAAGATAACGCTATTTGGGACGGTTTATGGAATCTGGATTTTGAAGGACAAGGAAG 777
Query 781 TTTTGGTGGTGCTGCTTGTGCCCCAAGGAAGCAATATTTCCAGAACATGGTCATTCCCTT 840
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 778 TTTTGGTGGCGCTGCTTGTGCCCCAAGGAAGCACTATTTCCAGAACATGGTCATTCCCTT 837
Query 841 CTATTAACTTGACCTTTTAAATATCTCTTATCTGCCGGATAATGAAAGAGAAAAACTTGA 900
|| |||||||||||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 838 CTGTTAACTTGACCTTTAAAATATCT-T-ATCTGCCGGATAATGAAAGAGAAAAACTTGA 895
Query 901 CCGACAAGTTAGGTCGAGTTTGAGTTTAGTTTGCGGTTTCATCTATTTGAGATTTTTGGT 960
||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 896 CCGACAACTTAGGTCGAGTTTGAGTTTAGTTTGTGGTTTCATTTATTTGAGATTTTTGGT 955
Query 961 TTAAACATAAATAGTTTTGTTATTGAATTGTGTGTGATGTAAGAAGCTCATTTGGTTT-A 1019
|| |||||| ||| ||||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct 956 TTTAACATATATAATTTTGGTAT-GAATTGTGTGTGATGTAAGAAGCTCATTTGGTTTTA 1014
Query 1020 TCATAAAAGAGTGATGTAGTAGAA 1043
||||||||||||||||||||||||
Sbjct 1015 TCATAAAAGAGTGATGTAGTAGAA 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51138361646
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5