BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479945
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24315.1 | Symbols: AtSec20 | Sec20 family protein | chr3:88... 1589 0.0
AT1G48520.1 | Symbols: GATB | GLU-ADT subunit B | chr1:17940100... 76.8 4e-13
> AT3G24315.1 | Symbols: AtSec20 | Sec20 family protein | chr3:8820455-8822820
REVERSE LENGTH=1186
Length=1186
Score = 1589 bits (860), Expect = 0.0
Identities = 976/1030 (95%), Gaps = 15/1030 (1%)
Strand=Plus/Plus
Query 1 ATGGATGAGGTTGTTGTTGAAGTGGAGAAGACGAAGAGAGAATGGGAAGAAGCGTACGAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 ATGGATGAGGTTGTTGTTGAAGTGGAGAAGACGAAGAGAGAATGGGAAGAAGCGTACGAG 220
Query 61 AAGACGATTGAACATATCATGGCGATTCAAGAGTACGGTAAATC-A--A--GGAGA-GGA 114
|||||||||| |||||| || |||||||| ||||||||||||| | | ||||| |||
Sbjct 221 AAGACGATTGGACATATTATCTCGATTCAACAGTACGGTAAATCAAGGAGGGGAGATGGA 280
Query 115 -GAG--GAGAAGATTTCGCTGCAGAGGCTCAACGGATTGGCTCAGGATGGTCTTTCTCTT 171
||| |||||| ||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 281 GGAGAAGAGAAGTTTTCGTTACAGAGGCTCAACGGATTGGCTCAGGATGGTCTCTCTCTT 340
Query 172 CTCAATTCTCTGCAATTCAATTTGGATCTTCTCGCGCCTCAGCTTCCTTCTGACGATCTG 231
|||||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||| |
Sbjct 341 CTCAATTCCCTTCAATTCAATTTGGATCTGCTCGCACCTCAGCTTCCTTCTGATGATCAG 400
Query 232 GTTCAATCTACTCAGTCACTGCTTGAAACCTGGAAGAATCAATATCACAGTTTGAGGGTA 291
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 401 GTTCAATCCACTCAGTCACTCCTTGAAACGTGGAAGAATCAATATCACAGTTTGAGGGTA 460
Query 292 AACCTGAGAAGTGCTAATTTGCAAGCTAAGGATAACATGAGGAAAGCAGCTCAAGAAGAG 351
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 AACTTGAGAAGTGCTAATTTGCAAGCTAAGGATAACATGAGGAAAGCAGCTCAAGAAGAG 520
Query 352 AGAGAGCTTCTCCTCGGTGGTGGAACAGAGTCTACAGTTCTCAGACGTAAACGTCAAGCA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 521 AGAGAGCTTCTCCTCGGTGGTGGAACAGAGTCTACAGTTCTCAGACGTAAACGACAAGCA 580
Query 412 AATGCTGGCGTGACATCGGATGCTGAAAGCATAACTGAAAGTCTCAGGCGTTCACGGCAG 471
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 AATGCTGGCGTGACATCCGATGCTGAAAGCATAACTGAAAGTCTCAGGCGTTCACGGCAG 640
Query 472 CTGATGGTTCAGGAGGTTGAACGAAGTACAAACACTCTTGTGGCTTTTGATGAATCTACT 531
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 641 CTGATGGTTCAGGAGGTTGAACGAAGTACAAACACTCTCGTGGCTTTTGATGAATCTACT 700
Query 532 GGAGTACTTAAAAAAGCCGAGAGTGAATACAAAGGTCATAGGTCTCTGTTGTCGAGGACC 591
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 701 GGAGTACTTAAAAAAGCCGAGAGTGAATACAAAGGTCATAGATCTCTGTTGTCGAGGACC 760
Query 592 CGTAATCTACTTTCGACAATGCAGCGTCAAGATGTAATTGACAGGATAATCCTCATAGTT 651
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 CGTAATCTACTTTCAACAATGCAGCGTCAAGATGTAATTGACAGGATAATCCTCATAGTT 820
Query 652 GGATTTTCTCTCTTTGTCTTTGCTGTTGTGTACGTTGTTTCAAAACGCATCGGAATTCTC 711
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 821 GGATTTTCTCTCTTTGTCTTTGCTGTTGTTTACGTTGTTTCAAAACGCATCGGAATTCTG 880
Query 712 AAACTGCAACGAATGGCCACTGCTGCTATTAAAGCTCAATTAGCTGGaaaaaaaGCAAAT 771
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 881 AAACTGCAACGAATGGCTACTGCTGCTATTAAAGCTCAATTAGCTGGAAAAGCAGCAAAT 940
Query 772 GGTGTAGGAGATGATGTTATGCCTCTCGGACAACAGTTTGATGGCGATACAGTTCCAACT 831
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 941 GGTGTAGGAGATGATGTTATGCCGCTCGGACAACAGTTTGATGGCAATACAGTTCCAACT 1000
Query 832 GTTAACATTCCTCTACTACAACGCATGCACGATGAACTCTGAAGCTCATTAGATGCTTGT 891
||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1001 GTTAATATTCCTCTACAACAACGCATGCACGATGAACTATGAAGCTCATTAGATGCTTGT 1060
Query 892 AACATTGTTCATGAATCTATATATATATTACAAGTTGATGTTGTTACCTAGGAATGCTCT 951
||||||||||| |||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 1061 AACATTGTTCAGGAAT--ATATATAT-T-ACAAGTTGATGTTGTTACCTAGGAATGCTCT 1116
Query 952 ATATATTACCACATGTTTCAAGGACAATTGAAATTGAAGTTTCTTTGAA-ATATCACAAA 1010
||||||||||||||||||| |||||| ||||||| |||||||||| || ||||||||||
Sbjct 1117 CTATATTACCACATGTTTCATGGACAACTGAAATTAAAGTTTCTTT-AAGATATCACAAA 1175
Query 1011 TAATTGTTTG 1020
||||||||||
Sbjct 1176 TAATTGTTTG 1185
> AT1G48520.1 | Symbols: GATB | GLU-ADT subunit B | chr1:17940100-17942822
FORWARD LENGTH=2020
Length=2020
Score = 76.8 bits (41), Expect = 4e-13
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 587 GGACCCGTAATCTACTTTCGACAATGCAGCGTCAAGATGTAATTGACAGG 636
||||||| |||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1954 GGACCCGGAATCTAGTTTCGACAATGCAGCGTCAAGATGTAATTGATAGG 1905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5