BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479953
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24440.1 | Symbols: VRN5, VIL1 | Fibronectin type III domain... 2800 0.0
> AT3G24440.1 | Symbols: VRN5, VIL1 | Fibronectin type III domain-containing
protein | chr3:8876027-8878171 REVERSE LENGTH=1989
Length=1989
Score = 2800 bits (1516), Expect = 0.0
Identities = 1840/1991 (92%), Gaps = 43/1991 (2%)
Strand=Plus/Plus
Query 1 ATGGATTCATCATCGACGAAATCGAAGATCTCTCAATCACGCAAGACgaacaacaagtca 60
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 1 ATGGATTCATCATCGACGAAATCGAAGATCTCACATTCACGCAAGACGAACAAAAAGTCA 60
Query 61 aacaagaagcatgattcaaatgggaaacaacaatctaacaagaa-acaacaagAAGACGA 119
||||||||||| || |||||||||||||||||| | ||||| || || | || | |
Sbjct 61 AACAAGAAGCACGAATCAAATGGGAAACAACAA-C-AACAACAAGACGTC--GATGGTGG 116
Query 120 TGGTGGAG-GTTTGAGATCATCATGGATCTGCAAGAATGCATCTTGTAGAGCTAATGTAC 178
|||||| | |||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 117 TGGTGG-GTGTTTGAGATCATCATGGATCTGCAAGAATGCATCGTGTAGAGCTAATGTGC 175
Query 179 CTAAAGATGATTCCTTTTGCAAGAGATGTTCTTGTTGTGTTTGCCATGGTTTCGATGAAA 238
||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 176 CTAAAGAAGATTCCTTTTGCAAGAGATGTTCTTGTTGTGTTTGTCATAATTTCGATGAAA 235
Query 239 ACAAAGACCCTAGTCTTTGGTTAGTTTGTGAACCTGAGAAATCAGATGATGTTGAGTTCT 298
|||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 236 ACAAGGATCCTAGTCTTTGGTTAGTTTGTGAGCCTGAGAAATCTGATGATGTTGAGTTCT 295
Query 299 GTGGCTTATCGTGTCACATTGAGTGTGCGTTTCGTGAAAACAAAGTTGGTGTTATTGGTC 358
|||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||
Sbjct 296 GTGGCTTATCGTGTCACATTGAGTGTGCTTTTCGAGAAGTCAAAGTTGGTGTTATTGCTC 355
Query 359 TTGGGGATCTGAAGAAGCTTGATGGTTGTTTTTGTTGTTACTCTTGTGGCAAAGTTTCTC 418
||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 356 TTGGGAATCTGATGAAGCTTGATGGTTGTTTTTGTTGCTACTCATGTGGCAAAGTTTCTC 415
Query 419 AAATTCTTGGATGTTGGAAGAAGCAGCTTGTGGCAGCGAAGGAAGCACGACGGCGCGATG 478
||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||
Sbjct 416 AAATTCTTGGATGTTGGAAAAAGCAGCTTGTGGCAGCAAAGGAAGCACGACGACGTGATG 475
Query 479 TTTTGTGTTATAGGATAGATTTGAGTTATAGACTGCTCAATGGGACTAGTCGGTTTAGTG 538
|||||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 476 GACTGTGTTATAGAATAGATTTGGGTTATAGACTGTTGAATGGGACTAGTCGGTTTAGTG 535
Query 539 AATTGCATGAGATTGTTAGAGCTGCTAAGTCTAAGCTAGAAGATGAAGTTGGGCCTCTTG 598
||||||||||||||||||||||||||||||||| ||| || ||||||||||| |||||||
Sbjct 536 AATTGCATGAGATTGTTAGAGCTGCTAAGTCTATGCTGGAGGATGAAGTTGGACCTCTTG 595
Query 599 ATGGACCTACTGCTAGAACTGATAGGGGCATTGTTAGTCGGCTTCCTGTTGCAGCTGATG 658
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||
Sbjct 596 ATGGACCTACTGCTAGAACTGATAGAGGCATTGTTAGTAGGCTTCCTGTTGCAGCTAATG 655
Query 659 TGCAAGAGCTTTGCACTTCTGCAA-TAAAGAAGGCAGAGGAGGTT-TCAGCCAATGCAGC 716
|||||||||||||||||||||||| |||| ||||||| ||| ||| |||||||||||||
Sbjct 656 TGCAAGAGCTTTGCACTTCTGCAATTAAA-AAGGCAGGGGA-GTTGTCAGCCAATGCAGG 713
Query 717 CAGAGATTTAGTTCCTGCTGCGTGTAGGTTTCATTTTGAGGATATTGCACCAAAACAAGT 776
|||||||||||||| |||||||| ||||||||||| || |||||||||||||| |||||
Sbjct 714 TAGAGATTTAGTTCCAGCTGCGTGCAGGTTTCATTTCGAAGATATTGCACCAAAGCAAGT 773
Query 777 GACTCTTCGTCTGATTGAGCTACCTAGTGCTGTAGAGTATGATGTTAAGGGTTACAAGTT 836
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 774 GACTCTTCGTCTGATTGAGCTACCTAGTGCTGTAGAATATGATGTTAAGGGTTACAAGTT 833
Query 837 ATGGTGTTTCAAGAAAGGAGAGACGCCTGAGGATGATTTATTTGTTGATTGCAGTAGAAC 896
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 834 ATGGTATTTCAAGAAAGGAGAGATGCCTGAGGATGATTTATTTGTTGATTGCAGTAGAAC 893
Query 897 TGAGAGGAGGATGGTGATATCTGACCTTGAGCCGTGCACGGAGTACACATTCCGTGTTGT 956
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 894 TGAGAGGAGGATGGTGATATCTGACCTTGAGCCTTGCACGGAGTACACATTCCGTGTTGT 953
Query 957 CTCTTACACAGAAGCTGGTATATTTGGCCATTCGAACGCTATGTGCTTTACGAAGAGCGT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 CTCTTACACAGAAGCTGGTATATTTGGCCATTCGAACGCTATGTGCTTTACGAAGAGCGT 1013
Query 1017 TGAGATATTGAAACCAGTGGATGGTAAAGAAAAGAGAATAACTGATTTAGTAGGTAATGG 1076
||||||||||||||||||||||||||| |||||||||| || ||||||||||||||| |
Sbjct 1014 TGAGATATTGAAACCAGTGGATGGTAAGGAAAAGAGAACAATTGATTTAGTAGGTAACGC 1073
Query 1077 TCAGCCTTCAGATAGAGAGGAGAAAAGTAGCATTTCTTCAAGATTTCAAATCGGGCAACT 1136
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1074 TCAGCCCTCAGATAGAGAGGAGAAAAGTAGCATTTCCTCAAGATTTCAAATTGGGCAACT 1133
Query 1137 TGGGAAGTATGTGCAGTTGGCTGAAGCTCAGGAGGAAGGCTTGCTTGAAGCGTTTTACAA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TGGGAAGTATGTGCAGTTGGCTGAAGCTCAGGAGGAAGGCTTGCTTGAAGCGTTTTACAA 1193
Query 1197 TGTAGATACTGAGAAAAGTTGTGAGCCGCCAGAGGAAGAATTGCCATCTCGACGGCCGCA 1256
||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||
Sbjct 1194 TGTAGATACTGAGAAAATTTGTGAGCCGCCAGAGGAAGAATTGCCACCTCGAAGGCCACA 1253
Query 1257 TGGGTTTGATCTAAATGTAGTTTCGGTGCCAGACTTGAATGAGGAGTTCACTCCTCTACC 1316
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1254 TGGGTTTGATCTAAATGTAGTTTCAGTGCCAGACTTGAATGAGGAGTTCACTCC---ACC 1310
Query 1317 TGATTCTTCTGGAGGTGAAGACAATGGAGTGCCGTTAAATTCGCTTGCTGAGGCTGATGG 1376
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1311 TGATTCTTCTGGAGGTGAAGACAATGGAGTGCCGCTAAATTCGCTTGCTGAGGCTGATGG 1370
Query 1377 TGATGAGCATGAT-A-A-CTATGATGATGATGTGTCTAACGGTAGTCTGAAGAACAACAA 1433
|| ||| |||||| | | || |||||||| ||||||||||||||| | ||||||||||||
Sbjct 1371 TGGTGATCATGATGATAACTGTGATGATGCTGTGTCTAACGGTAGACGGAAGAACAACAA 1430
Query 1434 TGACTGCTTGGTTATATCAGATGGAAGCGGTGATGATACTGAATTTGATTTCCTCATGAC 1493
|||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||
Sbjct 1431 CGACTGCTTGGTTATATCAGATGGAAGTGGTGATGATACCGGATTTGATTTCCTCATGAC 1490
Query 1494 CAGGAAGAGGAAAGCAATTTCAAACAGTAATGACTCAGAGAACCATGAGTGTGACAGTTC 1553
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1491 CAGGAAGAGGAAAGCAATTTCAGACAGTAATGACTCAGAGAACCACGAGTGTGACAGTTC 1550
Query 1554 GCCGATTGATGACACTCTTGAGAAATGTGTGAAGGTAATCAGGTGGCTGGAGCGTGAAGG 1613
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1551 GTCGATTGATGACACTCTTGAGAAATGTGTGAAGGTGATCAGGTGGCTGGAGCGTGAAGG 1610
Query 1614 CCACATTGACAA-AACATTCAGGGTCAGGTTCTTGACATGGTTCAGCATGAGGTCAACCG 1672
||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1611 CCACATTAA-AACAACATTCAGGGTCAGGTTCTTGACATGGTTCAGCATGAGCTCAACCG 1669
Query 1673 CTCAGGAGCAATCCGTTGTGAGCACATTTGTTCAGACTCTAGAGGATGATCCAAGTAGCC 1732
||||||||||||| ||||||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 1670 CTCAGGAGCAATCTGTTGTGAGCACATTTGTGCAGACTTTAGAGGATGATCCAGGTAGCC 1729
Query 1733 TTGCTGGCCAGCTTCTCGATGCATTCGCTGATGTTGTCTCCACCAAAAGGCCAAACAATG 1792
|||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1730 TTGCTGGCCAACTTGTCGACGCATTTACTGATGTTGTCTCCACCAAAAGGCCAAACAATG 1789
Query 1793 GAGTAAT-AG-TCTCA-----CA--CT----A---A---A-C-A--TTCTTTCTTAGTAC 1829
||||||| | || || || || | | | | | |||||||||||||
Sbjct 1790 GAGTAATGACCTCACATTGATCAAGCTTCCCATTGATTCAACCACATTCTTTCTTAGTAT 1849
Query 1830 GAATAATATGATTAGAACAAAATAGTCCATGATTTCTCTAACGTGGATTCGGATATTTAT 1889
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1850 GAATAATATGATTAGAACTAAATAGTCCATGATTTCTCTAACGTGGATTCGGCTATTTAT 1909
Query 1890 AATCAATTTGGACCACAGGATTGACCACATTGCAA-TCTATTTGGATTGGGTTTTAGATT 1948
|||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1910 CATCAATTTGGACCACAGGATTGACCACATTGCAAATCTCTTTGGATTGGGGTTTAGATT 1969
Query 1949 TAGGATTTGAC 1959
|||||||||||
Sbjct 1970 TAGGATTTGAC 1980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97037653485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5