BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479954
Length=709
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24450.1 | Symbols: | Heavy metal transport/detoxification ... 917 0.0
> AT3G24450.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr3:8880065-8881722 REVERSE LENGTH=755
Length=755
Score = 917 bits (496), Expect = 0.0
Identities = 604/651 (93%), Gaps = 27/651 (4%)
Strand=Plus/Plus
Query 1 ATTTCTCTCACATATTCTCTCCTTTCTCACCCAACTTCTCCTTTTTATTAG---T----- 52
|||||||| |||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1 ATTTCTCTTACATATTCTCTCATTTCTCACCCAACTTCTCCTTTTTATTAGTCTTCCCAA 60
Query 53 C-T--TCCCAAGATCACACTCTCTAAAAACCCTTAATTACTTTTTCAAACTAATGGGGAA 109
| | |||||| |||||||||||| |||||||||||||| ||||||||| |||||| ||
Sbjct 61 CATCATCCCAATATCACACTCTCTTAAAACCCTTAATTA-GTTTTCAAACCAATGGGAAA 119
Query 110 GCTCCAGAAAATTGGGAGAGTATGGGATTGtttttttCTTCCGACAAATCAGTGTTCATG 169
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 GCTCCAGAAGATTGGGAGAGTATGGGATTGTCTTTTTCTTCCGACAAATCAGTGTTCATG 179
Query 170 TTTTTGTCTAAACACTCTAGGAGATGATGAAGAAGAAGTGTTTGAG-AAGAAGCCATTGA 228
||||||||||||||||||| | || ||||||||||||| ||||||| ||| |||||||||
Sbjct 180 TTTTTGTCTAAACACTCTA-G-GA-GATGAAGAAGAAGAGTTTGAGAAAG-AGCCATTGA 235
Query 229 TAGATTCTTCAGCAGAGAAATCTGGGAAGGTCATGAGATTAAAAGATGTTGTAGCTGCTG 288
||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 236 TAGATTCTTCAACAGAGAAATCTGGGAAAGTCATGAGGTTAAAAGATGTTGTAGCTGCTG 295
Query 289 ATCATCGCCAGACTCTTGCCTTTCATCTTAAGCCTAAGATAGTGGAGCTAAAGGTGTCAA 348
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 ATCATCGTCAGACTCTTGCCTTTCATCTTAAGCCTAAGATAGTGGAGCTAAAGGTGTCAA 355
Query 349 TGCATTGCTACGGATGTGCGAAGAAAGTCGAGAAGCATATTTCTAAATTAGACGGAGTGA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TGCATTGCTACGGATGTGCGAAGAAAGTCGAGAAGCATATTTCTAAATTAGACGGAGTGA 415
Query 409 CATGGTACAAAGTGGAGCTAGAGAGCAAGAAGGTGGTGGTGAAGGGGAACATAATGCCAG 468
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 416 CATGGTACAAAGTGGAGCTAGAGAGCAAGAAGGTGGTGGTGAAAGGGAACATATTGCCGG 475
Query 469 TAGATGTGTTAGAGAGTATTTGTAAAGTCAAGAATGCTCAGCTTTGGTCTTCTTCTTCTT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 476 TAGATGTGTTAGAGAGTATTTGTAAAGTCAAGAATGCTCAGCTTTGGTCTTCT-C--CTT 532
Query 529 GAATCACTCTTT-CTTTCCACATGGGCCTTTCATGTCAATCTACATCTT-CATGTCAATC 586
|||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |
Sbjct 533 GAATCACTCTTTTCTTTCCACATGGGCCTTTCATGTCAATCTCCATCTTTCATGT---T- 588
Query 587 AATATTATTATCATTATCTAATTATGCGTACATACACATGCATGCATCTAT 637
| ||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 589 A-TATTATTGTCATTATCTAATTTTGCGTACATACACATGCATGCATCTAT 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34360156548
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5