BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479955
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24460.1 | Symbols: | Serinc-domain containing serine and s... 2383 0.0
> AT3G24460.1 | Symbols: | Serinc-domain containing serine and
sphingolipid biosynthesis protein | chr3:8885818-8893050 REVERSE
LENGTH=1976
Length=1976
Score = 2383 bits (1290), Expect = 0.0
Identities = 1440/1514 (95%), Gaps = 4/1514 (0%)
Strand=Plus/Plus
Query 1 TTCTTCCATATAAGAAACTGATTTCTGATGCAAAATTCTCCCATGGAATGAGTGATCTGT 60
||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 281 TTCTTTCATCTAAGAAACTGATTTCTGATGCAAAATCCTCCCATGGAATGAGTGATCTGT 340
Query 61 TTCTTGAATTTCTTGATCTTCTAATGATATGAAGAGGAGAGCGTC-TGGTAAGTTTAAGG 119
||||||||||||||||||||||||||| ||||||||||||| ||| |||||| |||||||
Sbjct 341 TTCTTGAATTTCTTGATCTTCTAATGACATGAAGAGGAGAGAGTCTTGGTAACTTTAAGG 400
Query 120 ACTAATGGAGACCGGTACAAGTGTTAGCAACAACAGCGGAAGCATCAGAAACGATAGCTA 179
| ||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||
Sbjct 401 AGTAATGGAGACCGGTACAAGCGTTAGCAACAACAACCAAAGCATCAGAAACGATAGCTA 460
Query 180 TGAAGCAATCAAGAATGGATCATGGTTTAATCAGTTCCGCAATGGTTGCAATCCATGGAT 239
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 461 TGAAGCAATCAAGAATGGATCATGGTTTAATCAGTTCCGCAACGGCTGCAATCCCTGGAT 520
Query 240 GGCTAGATATGTATACGGTCTGATATTTCTCATTGCGAATCTACTAGCTTGGGCTGCTCG 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 521 GGCTAGATATGTATACGGTCTGATATTCCTCATTGCGAATCTACTAGCTTGGGCTGCTCG 580
Query 300 TGATTATGGTCGGGGTGCCTTAAGAAAAGTAACAAAATTCAAGAACTGTAAAGGCGGGGA 359
|||||||||||||||||||||||||||||| |||| |||||||||||||||||| || ||
Sbjct 581 TGATTATGGTCGGGGTGCCTTAAGAAAAGTGACAAGATTCAAGAACTGTAAAGGTGGCGA 640
Query 360 AAACTGTTTGGGGACCGAAGGTGTCTTAAGAGTTAGCTTGGGATGTTTTTTGTTCTACTT 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 641 AAACTGTTTGGGGACCGACGGTGTCTTAAGAGTTAGCTTGGGATGTTTTTTGTTCTACTT 700
Query 420 TGTTATGTTTCTTTCAACACTTGGCACATCGAAAACACATTCATCAAGAGATAGATGGCA 479
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 701 TGTTATGTTTCTTTCAACACTTGGTACGTCGAAAACGCATTCATCAAGAGATAGATGGCA 760
Query 480 TTCTGGATGGTGGTTTGCTAAGCTCATCATGTGGCCTGCCTTAACCATTATCCCCTTCTT 539
||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||
Sbjct 761 TTCTGGATGGTGGTTTGTTAAGCTCATCATGTGGCCTGCCTTAACCATCATTCCCTTCTT 820
Query 540 GCTTCCTTCTTCCATTATTCACCTTTACGGAGAGATTGCCCATTTTGGTGCAGGGGTATT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 GCTTCCTTCTTCCATTATTCACCTTTACGGAGAGATTGCCCATTTTGGTGCAGGGGTATT 880
Query 600 TCTTC-TAATACAGCTAATTAGTGTGATCAGTTTCATTCAATGGCTTAACGAATGCTATC 658
|| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 881 TC-TCTTAATACAGCTAATTAGTGTGATCAGTTTCATTCAATGGCTCAACGAATGCTATC 939
Query 659 AGTCCCAAAAAGATGCAGAAAGATGCCGTGTCTATGTGATGTTACTAGCAACTACTTCAT 718
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 940 AGTCCCAAAAAGATGCAGAAAGATGCCGTGTCTATGTGATGTTACTATCAACTACTTCAT 999
Query 719 ACACAGTTTGCATAATAGGAGTGATTTTGATGTACATTTGGTACGCGCCGGATTCGTCAT 778
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1000 ACACAGTTTGCATAGTAGGAGTGATTTTGATGTACATTTGGTACGCGCCTGATTCTTCAT 1059
Query 779 GCCTTCTCAATATATTCTTCATAACATGGACTTTGTTCCTTATCCAACTTATGACAAGCA 838
| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 1060 GTCTTCTCAATATATTCTTTATAACATGGACTTTGTTCCTCATCCAACTCATGACAAGCA 1119
Query 839 TAGCTCTCCATCCTAAGGTGAATGCTGGATACTTGACTCCAGCTCTTATGGGACTCTATG 898
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 TCGCTCTCCATCCTAAAGTTAATGCTGGATACTTGACTCCAGCTCTTATGGGACTCTATG 1179
Query 899 TTGTGTTCATATGCTGGTGTGCCATTCGAAGTGAACCAGTGGGAGAAAGTTGCAATAGAA 958
||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1180 TTGTGTTTATATGCTGGTGTGCCATTCGAAGTGAACCAGTGGGCGAAAGTTGTAATAGAA 1239
Query 959 AAGCAGCAGCTTCGAACAGAACGGACTGGCTTACCATCATTAGCTTTGTGGTTGCGCTAC 1018
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1240 AAGCAGCAGCTTCAAACAGAACAGACTGGCTTACCATCATTAGCTTTGTGGTTGCGCTAC 1299
Query 1019 TCGCAATGGTTATTGCCACATTTTCTACAGGAATAGACTCCCAATGTTTCCAATTCAAGA 1078
| || |||||||| || |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1300 TTGCGATGGTTATCGCGACATTTTCGACAGGAATAGACTCCCAATGTTTCCAATTTAAGA 1359
Query 1079 AAGATGAGAACGATCAAGAAGAAGAAGAGGAAGATGGTGTTCCATATGGATATGGATTCT 1138
||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||
Sbjct 1360 AAGATGAGAACGATCAAGAAGAAGAAGCTGAAGATGATGTTCCATATGGCTATGGATTCT 1419
Query 1139 TCCATTTTGTATTTGCAACAGGAGCAATGTACTTCGCTATGCTACTCATCGGTTGGAACA 1198
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 TTCATTTTGTGTTTGCCACAGGAGCAATGTACTTCGCTATGCTACTCATCGGTTGGAACA 1479
Query 1199 CTCATCACCCCATGAAAAAGTGGACGATTGACGTGGGATGGACGAGTACTTGGGTAAGGG 1258
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1480 CTCATCATCCCATGAAAAAGTGGACGATTGACGTGGGATGGACAAGTACTTGGGTAAGGG 1539
Query 1259 TTGTGAACGAGTGGCTTGCGGTTTGCGTATACATTTGGATGTTGGTGGCTCCTCTCATAC 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 TTGTGAACGAGTGGCTTGCGGTTTGCGTATACATTTGGATGTTGGTGGCTCCTCTCATAC 1599
Query 1319 TAAAGAGCAGAAGACAAACAACAAGTGGGACATGAGAGGTAAGGAGATTTTGGGAAACGA 1378
||||||||||||||||||| ||| |||||| ||| |||||| |||| |||||||||||
Sbjct 1600 TAAAGAGCAGAAGACAAACGCCAACTGGGACTTGATAGGTAAAGAGAGATTGGGAAACGA 1659
Query 1379 CAAAGAACTTTGTCGTTTTGGATCTCTTTTCTCCATGGGATAGAACTAAACCACCTTTTT 1438
||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct 1660 CAAAGAACTTTGTCGTTTTGGATCTCTTTTCACCTTGGGATAGAACTAAACCACGTTTTT 1719
Query 1439 CACCTACGACCAAGATGGAAGTTGCGGTGGCAAAGCAAACATGCTCTCATGGGTTTGGTG 1498
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1720 CACCTACGACCAAGATGGAAGTTGCGGTAGCAAAGCAAACATGCTCTCATGGGTTTGGTG 1779
Query 1499 GGAAAATAGTTATT 1512
|||||||||| |||
Sbjct 1780 GGAAAATAGT-ATT 1792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78212449110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5