BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479958
Length=3386
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 | ... 2531 0.0
> AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7
| chr3:8912343-8918146 REVERSE LENGTH=3465
Length=3465
Score = 2531 bits (1370), Expect = 0.0
Identities = 1615/1731 (93%), Gaps = 26/1731 (2%)
Strand=Plus/Plus
Query 1 ATGCAGCGCCAGAGATCGATTCTGTCTTTCTTCCAAAAGCCCTCGCCGGCGACTACTCAG 60
||||||||||||||||||||| |||||||||||||||| ||| || |||||||||| ||
Sbjct 61 ATGCAGCGCCAGAGATCGATTTTGTCTTTCTTCCAAAAACCCACGGCGGCGACTACGAAG 120
Query 61 GGTTTGGTTTCCGGCGATGCTACCAGTGGAGGCGGCGGCGGCGTCGGAGGAGGA--T--T 116
||||||||||||||||||||| | || || || |||||| ||| ||| | || | |
Sbjct 121 GGTTTGGTTTCCGGCGATGCTGCTAGCGGCGGGGGCGGCAGCGGAGGACCACGATTTAAT 180
Query 117 GCGACTCAA--TG-TG--AAAGACGACGCTTCTGTACGCTTTGCTGTTTCGAAATCTGTC 171
| || || | || |||| ||||||||||||||| |||||||||||||||||||||
Sbjct 181 GTGAAGGAAGGGGATGCTAAAGGCGACGCTTCTGTACGTTTTGCTGTTTCGAAATCTGTC 240
Query 172 GATGAGGTTAGAGGAACGGATACTCCACCGGAGAAGGTTCCGCGTCGTGTTCTGCCGTCT 231
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GATGAGGTTAGAGGAACGGATACTCCACCGGAGAAGGTTCCGCGTCGTGTCCTGCCGTCT 300
Query 232 GGATTTAAGACGGCTGAATCCGCCGGAGGTGGTGCTTCGTCATTGTTCTCTAATATTGTG 291
||||||||| |||||||||||||| |||| ||||||||| ||||||| |||||| ||
Sbjct 301 GGATTTAAGCCGGCTGAATCCGCC---GGTGATGCTTCGTCCCTGTTCTCCAATATTATG 357
Query 292 CATAAGTTTGTGAAGGTCGATGATCGAGAATGTTCTGGACAGAGGAGCCGAGAAGATGTT 351
||||||||||| || |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 358 CATAAGTTTGTAAAAGTCGATGATCGAGATTGTTCTGGAGAGAGGAGCCGAGAAGATGTT 417
Query 352 GTTCCGCTGAATGATTCATCTGTATGTATGAAAGCTGATGATGTTATTCCTGAATTTCGT 411
||||||||||||||||||||| |||||||||| ||| |||||||||||||| ||||||||
Sbjct 418 GTTCCGCTGAATGATTCATCTCTATGTATGAAGGCTAATGATGTTATTCCTCAATTTCGT 477
Query 412 TCCAATAATGGTCAAACTCAAGAAAGAGACCATGCTTTTAGCTTCAGTGGGAGA---G-- 466
|||||||||||| |||||||||||||| ||||||||||||| |||||||||||| |
Sbjct 478 TCCAATAATGGTAAAACTCAAGAAAGAAACCATGCTTTTAGTTTCAGTGGGAGAGCTGAA 537
Query 467 --TAGA--AG-A-TA-ATATAGGAGTAGATGATGATGTTCCTGGTCCAGAAACACCAGGG 519
|||| || | | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 538 CTTAGATCAGTAGAAGATATAGGAGTAGATGGCGATGTTCCTGGTCCAGAAACACCAGGG 597
Query 520 ATACGTCCAAGTGTTTCTCGCTTGAAGCGAGTTTTGGAGGATGGAATGACTGTTAAGGAG 579
|| |||||| ||| ||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 598 ATGCGTCCACGTGCTTCTCGCTTGAAGCGAGTTCTGGAGGATGAAATGACTTTTAAGGAG 657
Query 580 AATAAGGCTCCTGTATTGGATTCTAATAAAAGGCTGAAAATGCTTCAGGATCCGGTTTGT 639
|||||| |||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 658 GATAAGGTTCCTGTATTGGACTCTAACAAAAGGCTGAAAATGCTCCAGGATCCGGTTTGT 717
Query 640 GGAGAGAAGAAAGAAGTAAACGAAGGAACCAAATTTGAGTGGCTTGAGCCTTCTCGAATC 699
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 718 GGAGAGAAGAAAGAAGTAAACGAAGGAACCAAATTTGAATGGCTTGAGTCTTCTCGAATC 777
Query 700 AGGGATGCTAATAGAAGACGGCCTGATGATCCACTTTACGACAGAAAGACCTTATACATA 759
|||||||| ||||||||||| ||||||||||| |||||||| |||||||||||| |||||
Sbjct 778 AGGGATGCCAATAGAAGACGTCCTGATGATCCCCTTTACGATAGAAAGACCTTACACATA 837
Query 760 CCACCTGATGTTTTCAAGAAAATGTCTGCGTCGCAAAAGCAATATTGGAGTGTTAAGAGT 819
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 838 CCACCTGATGTTTTCAAGAAAATGTCTGCATCACAAAAGCAATATTGGAGTGTTAAGAGT 897
Query 820 GAATATATGGATATTGTGCTTTTCTTTAAAGT-GGGAAAGTTTTATGAGCTGTATGAGGT 878
||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||| |
Sbjct 898 GAATATATGGACATTGTGCTTTTCTTTAAAGTGGGGAAA-TTTTATGAGCTGTATGAGCT 956
Query 879 AGATGCGGAGTTAGGTCACAAGGAGCTTGACTGGAAGATGACCATGAGCGGTGTGGGAAA 938
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 957 AGATGCGGAATTAGGTCACAAGGAGCTTGACTGGAAGATGACCATGAGTGGTGTGGGAAA 1016
Query 939 ATGCAGACAGGTCGGTATCTCTGAAAGTGGGATAGATGAGGCAGTGCAAAAGCTTTTAGC 998
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1017 ATGCAGACAGGTTGGTATCTCTGAAAGTGGGATAGATGAGGCAGTGCAAAAGCTATTAGC 1076
Query 999 TCGTGGATATAAAGTTGGACGAATTGAGCAGCTAGAAACATCTGACCAAGCAAAAGCCAG 1058
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1077 TCGTGGATATAAAGTTGGACGAATCGAGCAGCTAGAAACATCTGACCAAGCAAAAGCCAG 1136
Query 1059 AGGTGCTAATACTATAATTCCAAGGAAGCTAGTTCAGGTATTAACTCCATCAACAGCAAG 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AGGTGCTAATACTATAATTCCAAGGAAGCTAGTTCAGGTATTAACTCCATCAACAGCAAG 1196
Query 1119 CGAGGGTAACATTGGGCCTGATGCCGTCCATCTTCTTGCTATAAAAGAGATCAAAATGGA 1178
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CGAGGGAAACATCGGGCCTGATGCCGTCCATCTTCTTGCTATAAAAGAGATCAAAATGGA 1256
Query 1179 GCTAGAAAAGTGTTCAACTGTGTATGGATTTGCTTTTGTTGACTGTGCTGCCTTGAGGTT 1238
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GCTACAAAAGTGTTCAACTGTGTATGGATTTGCTTTTGTTGACTGTGCTGCCTTGAGGTT 1316
Query 1239 TTGGGTCGGGTCCATCAGCGACGATGCATCATGTGCTGCTCTTGGAGCTTTATTGATGCA 1298
|||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1317 TTGGGTTGGGTCCATCAGCGATGATGCATCATGTGCTGCTCTTGGAGCGTTATTGATGCA 1376
Query 1299 GGTTTCTCCAAAGGAAGTGGTATATGACAGTAAAGGGCTATCAAGAGAAGCCCAAAAGGC 1358
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1377 GGTTTCTCCAAAGGAAGTGTTATATGACAGTAAAGGGCTATCAAGAGAAGCACAAAAGGC 1436
Query 1359 TCTAAGGAAATATACATTGACAGGGTCTACGGCGGTACAGTTGGCTCCAGTATCACAAGT 1418
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1437 TCTAAGGAAATATACGTTGACAGGGTCTACGGCGGTACAGTTGGCTCCAGTACCACAAGT 1496
Query 1419 AATGGGGGATACAGATGCTGCTGGAGTTAGAAATATAATAGAATCTAATGGATACTTTAG 1478
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1497 AATGGGGGATACAGATGCTGCTGGAGTTAGAAATATAATAGAATCTAACGGATACTTTAA 1556
Query 1479 AGGTTCTTCTGAGTCATGGAACTGTGCTGTTGATGGTCTAAGTGAATGTGATGTTGCCCT 1538
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1557 AGGTTCTTCTGAATCATGGAACTGTGCTGTTGATGGTCTAAATGAATGTGATGTTGCCCT 1616
Query 1539 TAGTGCTCTTGGAGAGCTAATTAATCATCTGTCTAGGCTGAAGCTAGAAGATGTACTTAA 1598
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1617 TAGTGCTCTTGGAGAGCTAATTAATCATCTGTCTAGGCTAAAGCTAGAAGATGTACTTAA 1676
Query 1599 GCATGGAGATATTTTTCCATACCAAGTTTACAGGGGTTGTCTCAGAATTGATGGCCAGAC 1658
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 GCATGGGGATATTTTTCCATACCAAGTTTACAGGGGTTGTCTCAGAATTGATGGCCAGAC 1736
Query 1659 GATGGTAAATCTTGAGATATTTAACAATAGCTGGGATGGCGGTCCTTCAGG 1709
||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1737 GATGGTAAATCTTGAGATATTTAACAATAGCTGTGATGGTGGTCCTTCAGG 1787
Score = 2486 bits (1346), Expect = 0.0
Identities = 1522/1608 (95%), Gaps = 8/1608 (0%)
Strand=Plus/Plus
Query 1757 GGACCTTGTACAAATATCTTGATAACTGTGTTAGTCCAACTGGTAAGCGGCTCTTAAGAA 1816
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1787 GGACCTTGTACAAATATCTTGATAACTGTGTTAGTCCAACTGGTAAGCGACTCTTAAGGA 1846
Query 1817 ATTGGATCTGCCATCCACTCAAAGATGTAGCAAGCGTCAATAAAAGGCTTGATATAGTTG 1876
|||||||||||||||||||||||||||||| |||| |||||||| |||||||| ||||||
Sbjct 1847 ATTGGATCTGCCATCCACTCAAAGATGTAGAAAGCATCAATAAACGGCTTGATGTAGTTG 1906
Query 1877 AAGAATTCACGGCAAACTCAGAAATTATGCAAACCACCGGCCAGTATTTTCACAAACTTC 1936
|||||||||||||||||||||||| |||||||| ||| ||||||||| | ||||||||||
Sbjct 1907 AAGAATTCACGGCAAACTCAGAAAGTATGCAAATCACTGGCCAGTATCTCCACAAACTTC 1966
Query 1937 CAGACTTAGAAAGACTGCTCGGACGCATTAAGTCTAGCGTTCAATCATCAGCCTCTGTTT 1996
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
Sbjct 1967 CAGACTTAGAAAGACTGCTCGGACGCATCAAGTCTAGCGTTCGATCATCAGCCTCTGTGT 2026
Query 1997 TGCCTGCTCTTCTGGGGAAAAAAGTGCTGAAACAACGAGTTAAAGCATTTGGGCAAACTG 2056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2027 TGCCTGCTCTTCTGGGGAAAAAAGTGCTGAAACAACGAGTTAAAGCATTTGGGCAAATTG 2086
Query 2057 TGAAAGGGTTCAGAAGTGGAATTGATTTGTTGTTGGCTCTACAGAAGGAATCAAATATGA 2116
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2087 TGAAAGGGTTCAGAAGTGGAATTGATCTGTTGTTGGCTCTACAGAAGGAATCAAATATGA 2146
Query 2117 TGAGTTTGCTTTGTAAACTCTGTAAACTTCCTATATTAGTTGGAAACAA-TGGGCTAGAG 2175
|||||||||||| ||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 2147 TGAGTTTGCTTTATAAACTCTGTAAACTTCCTATATTAGTAGGAAA-AAGCGGGCTAGAG 2205
Query 2176 TTATTCCTTTCTCAATTTGAAGCAGCCATAGATAGCGACTTTCCAAATTATCAGAACCAA 2235
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2206 TTATTTCTTTCTCAATTCGAAGCAGCCATAGATAGCGACTTTCCAAATTATCAGAACCAA 2265
Query 2236 GATATGACAGAGGAGAATGCTGAAACTCTTACAATACTTATTGAACTATTTATCGAAAGA 2295
||| ||||||| || || ||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 2266 GATGTGACAGATGAAAACGCTGAAACTCTCACAATACTTATCGAACTTTTTATCGAAAGA 2325
Query 2296 GTC-ACTCAATGGTCTGAGGTCATTCACATTATAAGCTGCCTCGATGTCCTGAGATCTTT 2354
| | ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 2326 G-CAACTCAATGGTCTGAGGTCATTCACACCATAAGCTGCCTAGATGTCCTGAGATCTTT 2384
Query 2355 TGCAATCGCAGCAAGTCTCTCTGCTGGAAGCATGGCCAGGCCTGTTATTTTTCCCGAATC 2414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2385 TGCAATCGCAGCAAGTCTCTCTGCTGGAAGCATGGCCAGGCCTGTTATTTTTCCCGAATC 2444
Query 2415 AGAAAATACAGATCAAAATCAGGAAATAAAAGGGCCAATACTTAAAATCCAAGGACTATG 2474
|||| ||||||||| |||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 2445 AGAAGCTACAGATCAGAATCAGAAAACAAAAGGGCCAATACTTAAAATCCAAGGACTATG 2504
Query 2475 GCATCCATTTGCAGTTGCAGCTGATGGTCAATTGCCTGTTCCAAATGATATACTCCTTGG 2534
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2505 GCATCCATTTGCAGTTGCAGCCGATGGTCAATTGCCTGTTCCGAATGATATACTCCTTGG 2564
Query 2535 TGAGGATAGAA-ACCGCAGCAACAGCATTCATCCTCGGTCCTTGTTACTGACAGGACCAA 2593
|||| ||||| | |||| |||||||||||||||||| ||||||||||| |||||||
Sbjct 2565 CGAGGCTAGAAGA-AGCAGTGGCAGCATTCATCCTCGGTCATTGTTACTGACGGGACCAA 2623
Query 2594 ACATGGGTGGAAAGTCAACTCTTCTTCGTGCAACATGTCTTGCCGTTATCTTTGCCCAAC 2653
||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2624 ACATGGGCGGAAAATCAACTCTTCTTCGTGCAACATGTCTGGCCGTTATCTTTGCCCAAC 2683
Query 2654 TTGGCTGCTATGTGCCATGTGAGTCTTGCGAAATCTCCCTTGTGGATACTATCTTCACAA 2713
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2684 TTGGCTGCTACGTGCCGTGTGAGTCTTGCGAAATCTCCCTCGTGGATACTATCTTCACAA 2743
Query 2714 GGCTTGGTGCATCTGATAGAATCATGACAGGAGAGAGTACCTTCTTGGTAGAATGCACTG 2773
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2744 GGCTTGGCGCATCTGATAGAATCATGACAGGAGAGAGTACCTTTTTGGTAGAATGCACTG 2803
Query 2774 AGACGGCATCAGTTCTTCAGAATGCAACTCAGGATTCACTAGTAATCCTTGACGAACTGG 2833
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2804 AGACAGCGTCAGTTCTTCAGAATGCAACTCAGGATTCACTAGTAATCCTTGACGAACTGG 2863
Query 2834 GCAGAGGAACTAGTACTTTCGATGGATACGCCATTGCATACTCGGTTTTTCGTCACCTGG 2893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2864 GCAGAGGAACTAGTACTTTCGATGGATACGCCATTGCATACTCGGTTTTTCGTCACCTGG 2923
Query 2894 TAGAGAAAGTCCAGTGTCGGATGCTCTTTGCAACACATTACCACCCTCTCACCAAGGAAT 2953
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2924 TAGAGAAAGTTCAATGTCGGATGCTCTTTGCAACACATTACCACCCTCTCACCAAGGAAT 2983
Query 2954 TCGCGTCTCACCCACGTGTCACCTCGAAACACATGGCGTGCGCATTCAAATCAAGATCTG 3013
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2984 TCGCGTCTCACCCACGTGTCACCTCGAAACACATGGCTTGCGCATTCAAATCAAGATCTG 3043
Query 3014 ATCAAGCA-CCACGTGGCTGTGACCAAGACCTAGTGTTCTTGTACCGTTTAACCGAGGGA 3072
|| | || |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3044 ATTAT-CAACCACGTGGTTGTGATCAAGACCTAGTGTTCTTGTACCGTTTAACCGAGGGA 3102
Query 3073 GCTTGTCCCGAGAGCTACGGACTTCAAGTAGCCCTCATGGCTGGAATACCAAACCTAGTG 3132
|||||||| |||||||||||||||||||| || |||||||||||||||||||||| ||||
Sbjct 3103 GCTTGTCCTGAGAGCTACGGACTTCAAGTGGCACTCATGGCTGGAATACCAAACCAAGTG 3162
Query 3133 GTTGAAACAGCATCAGACGCTGCTCAAGCCATGAAGAGATCAATTGGCGAAAACTTCAAA 3192
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 3163 GTTGAAACAGCATCAGGTGCTGCTCAAGCCATGAAGAGATCAATTGGGGAAAACTTCAAG 3222
Query 3193 TCAAGTGAGCTAAGGTCTGAGTTCTCAAGTCTGCATGAAGACTGGCTCAAGTCATTGGTA 3252
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3223 TCAAGTGAGCTAAGATCTGAGTTCTCAAGTCTGCATGAAGACTGGCTCAAGTCATTGGTG 3282
Query 3253 GGTATCTCTCGAGCCGCCCACAACAATGCCGCCATTGGCGAAGATGACTACGACACTTTG 3312
||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3283 GGTATTTCTCGAGTCGCCCACAACAATGCCCCCATTGGCGAAGATGACTACGACACTTTG 3342
Query 3313 GTTTGCTTATGGCATGAGATCAAATCTTCTTACTGTGTTCCCAAATAA 3360
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3343 TTTTGCTTATGGCATGAGATCAAATCCTCTTACTGTGTTCCCAAATAA 3390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 168510761537
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5