BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479959

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24500.1 | Symbols: MBF1C, ATMBF1C | multiprotein bridging f...   732    0.0  


> AT3G24500.1 | Symbols: MBF1C, ATMBF1C | multiprotein bridging 
factor 1C | chr3:8918679-8919308 FORWARD LENGTH=630
Length=630

 Score =  732 bits (396),  Expect = 0.0
 Identities = 430/447 (96%), Gaps = 0/447 (0%)
 Strand=Plus/Plus

Query  1    ATGCCGAGCAGATACCCAGGAGCAGTGACACAAGACTGGGAACCAGTAATTCTCCACAAA  60
            |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct  77   ATGCCGAGCAGATACCCAGGAGCAGTAACACAAGACTGGGAACCAGTAGTTCTCCACAAA  136

Query  61   TCAAAACAAAAGAGTCAAGACCTACGCGATCCAAAAGCGGTTAACGCAGCGCTTAGAAAC  120
            |||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct  137  TCAAAACAAAAGAGCCAAGACCTACGCGATCCGAAAGCGGTTAACGCAGCTCTGAGAAAC  196

Query  121  GGCGTCGCGGTTCAAACGGTTAAGAAATTCGACGCCGGTTCTAACAAAAAGGGGAAATCT  180
            || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  197  GGTGTCGCGGTTCAAACGGTTAAGAAATTCGATGCCGGTTCGAACAAAAAGGGGAAATCT  256

Query  181  ACGGCGGTTCCGGTTATTAACACGAAGAAGCTGGAGGAAGAAACAGAGCCTGCGGCGATG  240
            |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  257  ACGGCGGTTCCGGTGATTAACACGAAGAAGCTGGAAGAAGAAACAGAGCCTGCGGCGATG  316

Query  241  GATCGTGTGAAAGCAGAGGTGAGGTTGATGATACAGAAGGCGAGATTGGAGAAGAAGATG  300
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  317  GATCGTGTGAAAGCAGAGGTGAGGTTGATGATACAGAAAGCGAGATTGGAGAAGAAGATG  376

Query  301  TCGCAAGCGGATTTGGCGAAACAGATCAATGAAAGGACTCAGGTGGTTCAGGAATATGAG  360
            || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  377  TCACAAGCGGATTTGGCGAAACAGATCAATGAGAGGACTCAGGTAGTTCAGGAATATGAG  436

Query  361  AATGGTAAAGCTGTTCCTAATCAAGCTGTGCTTGCGAAGATGGAGAAGGTTCTAGGTGTT  420
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  437  AATGGTAAAGCTGTTCCTAATCAGGCTGTGCTTGCGAAGATGGAGAAGGTTCTAGGTGTT  496

Query  421  AAACTTAGGGGTAAAATTGGTAAATGA  447
            |||||||||||||||||||| ||||||
Sbjct  497  AAACTTAGGGGTAAAATTGGGAAATGA  523



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21263257827


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5