BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479962

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24510.1 | Symbols:  | Defensin-like (DEFL) family protein |...   435    2e-121


> AT3G24510.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr3:8931977-8932708 FORWARD LENGTH=373
Length=373

 Score =  435 bits (235),  Expect = 2e-121
 Identities = 331/375 (88%), Gaps = 15/375 (4%)
 Strand=Plus/Plus

Query  1    CGAGACTAAACTTTGGAAAATCAAAAGCTCCCACTCTGAAAATTTGAAAATGAAGAACGC  60
            ||||||||||| ||| |||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct  1    CGAGACTAAACATTGAAAAATCCAAAGCTCCCATTCTAAAAATTTGAAAATGAAGAACGC  60

Query  61   TTCTCTCAAGCTCCCACTCTTGATTTTTATTTTGGTCATCACATCTAATCTTGGAGCAGA  120
            |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct  61   TTCTCTCAAGCTCCCACTCTTGATCTTCATTTTGGTCATCACATCTAATCTTGGAGCAGA  120

Query  121  AGCAAGAAAGCTGACCGGAGTTGATGATATA-TTAATCGAAGGTGCCGCCGCAAGTCCAC  179
            ||||||||||||||||||||||| |||  || ||  | |||||||  |||||||||||||
Sbjct  121  AGCAAGAAAGCTGACCGGAGTTGCTGACGTAATTGTT-GAAGGTGAAGCCGCAAGTCCAC  179

Query  180  AGTACG-TAGACACCGATGACGA-TGACACATTGAACAAAGCCCCATCTTGCAAGAGGGA  237
            |||||| ||  || |||||| || |||||| ||||||||| |||||||||||||||||||
Sbjct  180  AGTACGGTAT-CATCGATGA-GAATGACACTTTGAACAAATCCCCATCTTGCAAGAGGGA  237

Query  238  CATCGACTGTAGTTTTCAGTGTCCCAAGGGAGGATTCTGCAACCTACGCCTTGGCAAATG  297
            ||||||||||| ||||||||||| || |||||||||||||||||||  ||||   |||||
Sbjct  238  CATCGACTGTACTTTTCAGTGTCGCAGGGGAGGATTCTGCAACCTAATCCTTCAAAAATG  297

Query  298  TGAATGTTTGTAATAATA---A---TCGCATTATAATC-AACTTTTTATCAATAAAAATT  350
            ||||||||||||||||||   |   ||||||||||||| || |||  |||||||||| ||
Sbjct  298  TGAATGTTTGTAATAATATTTACAATCGCATTATAATCTAAGTTT--ATCAATAAAAGTT  355

Query  351  ATCTATCAATTCTTC  365
            || ||||||||||||
Sbjct  356  ATATATCAATTCTTC  370



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17141302409


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5