BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479964
Length=1661
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24520.1 | Symbols: AT-HSFC1, HSFC1 | heat shock transcripti... 2002 0.0
AT3G24518.1 | Symbols: | other RNA | chr3:8941129-8942488 REVE... 1253 0.0
> AT3G24520.1 | Symbols: AT-HSFC1, HSFC1 | heat shock transcription
factor C1 | chr3:8941066-8942874 FORWARD LENGTH=1725
Length=1725
Score = 2002 bits (1084), Expect = 0.0
Identities = 1241/1314 (94%), Gaps = 21/1314 (2%)
Strand=Plus/Plus
Query 363 aacaacaacaacaacaacaacGTGATCGCACCTTTCATTGTGAAAACATATCAAATGGTT 422
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 408 AACAACAACAACAACAACAACGTGATCGCACCTTTCATCGTGAAAACATATCAGATGGTC 467
Query 423 AATGATCCTTTGACCGATTGGCTCATCACTTGGGGACCTGCTCACAACAGTTTCATAGTC 482
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 AATGATCCTTCCACCGATTGGCTCATCACTTGGGGACCTGCTCACAACAGTTTCATAGTC 527
Query 483 GTTGATCCACTCGACTTCTCGCAACGGATCTTACCTGCTTATTTCAAACACAACAATTTC 542
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 528 GTTGATCCACTCGACTTCTCGCAACGAATCTTACCTGCTTATTTCAAACACAACAATTTC 587
Query 543 AGCAGCTTCGTTCGTCAACTCAACACCTATGGGTTTAGGAAAGTGGATCCGGACCGGTGG 602
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 AGCAGTTTTGTTCGTCAACTCAACACCTATGGGTTTAGGAAAGTGGATCCGGACCGGTGG 647
Query 603 GAGTTTGCGAACGAGCATTTTCTGAGGGGACAGAAGCACTTGTTGAAGAACATAGCGCGT 662
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 648 GAGTTTGCGAACGAGCATTTTCTAAGGGGACAGAAGCATTTGTTGAATAACATAGCGCGT 707
Query 663 AGGAAACACGCGCGAGGGATGTACGGTCAAGATTTGGAGGACGGTGAGATTGTGAGAGAG 722
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 708 AGGAAACACGCGCGGGGGATGTACGGTCAAGATTTGGAGGACGGTGAGATTGTGAGGGAG 767
Query 723 ATCGAACGGTTAAAAGAAGAGCAAAGGGAGCTAGAGGCAGAGATTCAGAGGATGAACCAA 782
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 768 ATCGAACGGTTAAAAGAAGAGCAGAGGGAGCTAGAGGCAGAGATTCAGAGGATGAACCGG 827
Query 783 AGGATCGAAGCGACGGAGAAGAGACCGGAGCAGATGATGGCGTTTCTTTACAAAGTCGTT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 AGGATCGAAGCGACGGAGAAGAGACCGGAGCAGATGATGGCGTTTCTTTACAAAGTCGTT 887
Query 843 GAAGATCCTGATCTTCTTCCAAGAATGATGCTTGAGAAAGAACGGACAAAGCAACAA--- 899
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 888 GAAGATCCTGATCTTCTTCCAAGAATGATGCTCGAGAAAGAACGGACAAAGCAACAACAA 947
Query 900 ---GTTTCCGACAAGAAGAAGCGTCGTGTCACGATGTCGACGGTGAAAG-CAGAGGAGGA 955
|||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 948 CAAGTTTCCGACAAGAAGAAGCGTCGTGTCACGATGTCGACGGTGAA-GTCAGAGGAAGA 1006
Query 956 AGAAGTTGAAGAAGACGAAGGGAGGGTCTTTAGGGTTATTTCATCATCAACGCCGTCACC 1015
|||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 1007 AGAAGTGGAAGAAGATGAAGGGAGGGTCTTTAGGGTTATGTCATCATCAACACCGTCGCC 1066
Query 1016 GTCGTCAACGGAGAATCTTTACCGGAATCATTCACCGGATGGGTGGGTTGTTCCCATGAC 1075
||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1067 GTCATCAACGGAGAATCTTTACCGGAATCATTCACCGGATGGGTGGATTGTTCCTATGAC 1126
Query 1076 GCAAGGACAGTTTGGTAATTACGAGACTGGTTTGGTGGCGAACTCGATGCTCTCGAATTC 1135
||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1127 GCAAGGACAGTTTGGTAGTTACGAGACGGGTTTGGTGGCGAAGTCGATGCTCTCGAATTC 1186
Query 1136 AACGTCTTCGACGTCATCATCGTTGACCTCCACGTTTTCGTTACCGGAGAGTGTTAACgg 1195
|||||| |||||||||||||| ||||| || |||||||| || |||||||||||||||||
Sbjct 1187 AACGTCGTCGACGTCATCATCTTTGACGTCGACGTTTTCTTTGCCGGAGAGTGTTAACGG 1246
Query 1196 aggaggaggaggaggaTGTGGGAATATTCAGGGAGAAAGAAGGTATAAAGAAACGGCGAC 1255
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1247 AGGAGGAGGAGGAGGATGTGGGAGTATTCAGGGAGAAAGAAGGTATAAAGAAACGGCGAC 1306
Query 1256 GTTTGGAGGAGTGGTAGAGTCAAATCCACCAACAACACCGCCTTATCCGTTTTCTCTGTT 1315
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1307 GTTTGGAGGAGTGGTAGAGTCAAATCCACCAACAACACCGCCTTATCCATTTTCTCTGTT 1366
Query 1316 TCGAGGTGGCTTTTAGCGTTTAGCTTCACATGATATATGATCttta---tt-atg---gt 1368
|||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 1367 TCGAGGTGGCTTTTAGCGTTTAGCTTCACATGATATATGATCTTTAGACTTTATTATTGT 1426
Query 1369 tctattattattattatttattatttgttt-tttgttcttaattattttatgtatAACCA 1427
| |||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 1427 TATATTATTATTATTATTTATTTTTTGTGTGTTTGTTCTTAATTATTTTATGTATAACCA 1486
Query 1428 AAAGAAAGaaaaaaaaTAAGGACAGATCGATAGTTGAGTCAGTAGTCATCGTTTATAGAA 1487
||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1487 AAAGAAAGAAAGAAAATAAGGACAGATCCATAGTTGAGTCAGTAGTCATCGTTTGTAGAA 1546
Query 1488 AGTTTTGACAGTATATAATTTCTGATTATATTTGTTAGAAAGTTCATATGTTGACTTTGT 1547
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1547 AGTTTTGACAGTATATAATTTCTGATTATATTTGTTA-AAAGTTCATATGTTGACTTTGT 1605
Query 1548 TATTTGTTTTTAAAAGTATTTTCCAGGTGATTTGTGTAATATATCCATACTTTGTAATAA 1607
| || |||| ||||||| |||| |||||| ||||||||||||| || |||| |||||||
Sbjct 1606 T-TTCCTTTT-AAAAGTACTTTC-AGGTGACTTGTGTAATATATTCACACTT-GTAATAA 1661
Query 1608 CAACAATTTTCATCTTCTTCACTACTTGAGTGTTTTGATTTTTGAATAAAGTAT 1661
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1662 CAACAATTTTGATCTTCTTCACTACTTCAGTGTTTTGATTTTTGAATAAAGTAT 1715
Score = 363 bits (196), Expect = 4e-99
Identities = 280/316 (89%), Gaps = 23/316 (7%)
Strand=Plus/Plus
Query 22 ATTAAGAAAAAACACA-GCCT-AATAAT--A-ATA-TGC-AATGGATCAAATAACTTGTC 74
|||||||||||||| | |||| ||| || | ||| | | |||| |||| |||||||||
Sbjct 38 ATTAAGAAAAAACA-ATGCCTAAAT-ATGCATATATTTCAAATGTATCACATAACTTGTG 95
Query 75 ACATAAGAAATATATTAACaaaacaaaaagggcaaaaaaGACCTGAAAGCTTTGAGACAC 134
|||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 96 ACATAAGAAA-ATATAAACAAAACAAAAAGGGCAAAAAAGACCTGAAAGCTTAGAGGCAC 154
Query 135 ACCTGCATAGGTCCCACAGTTCACTCGTGACACCGTAAAA-GCAAAAACACGAACCCGCC 193
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 155 ACCTGCATAGGTCCCACAGTTCACTCGTGACACCGTAAAAGGC-AAAACACGAACCCGCC 213
Query 194 ACGTTA-CACAAAAAGCAAGCCACGTCAATATAGTCTCACTGTCAACTACACTTAACTTA 252
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 ACGTTATCACAAAAAGCAAGCCACGTCAATATAGTCTCACTGTCAACTACACTTAACTTA 273
Query 253 CTATTTTCACATTTTATTTCCCTATTTTATTTTGTTTATATAAACC-TACCAGCCTCCTC 311
|||||||||||| | |||| ||||| || | ||||||||| | |||| ||||||
Sbjct 274 CTATTTTCACATCTCATTTTCCTATCTT-T-------ATATAAACCCT-CCAGGCTCCTC 324
Query 312 CTTAATTTCTTTACCA 327
|||||||||||||||
Sbjct 325 TTTAATTTCTTTACCA 340
> AT3G24518.1 | Symbols: | other RNA | chr3:8941129-8942488 REVERSE
LENGTH=1169
Length=1169
Score = 1253 bits (678), Expect = 0.0
Identities = 833/906 (92%), Gaps = 17/906 (2%)
Strand=Plus/Minus
Query 394 CTTTCATTGTGAAAACATATCAAATGGTTAATGATCCTTTGACCGATTGGCTCATCACTT 453
||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||||||
Sbjct 900 CTTTCATCGTGAAAACATATCAGATGGTCAATGATCCTTCCACCGATTGGCTCATCACTT 841
Query 454 GGGGACCTGCTCACAACAGTTTCATAGTCGTTGATCCACTCGACTTCTCGCAACGGATCT 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 840 GGGGACCTGCTCACAACAGTTTCATAGTCGTTGATCCACTCGACTTCTCGCAACGAATCT 781
Query 514 TACCTGCTTATTTCAAACACAACAATTTC-AGC--A-GCTTCGTTCGTCAACTCAACACC 569
||| || | | ||||| ||| | | | | | | | ||| | | | ||
Sbjct 780 TACATG-AAACTGGAAACA-GGGGATTACGAACTAATGATCCTTTC-TTTA-TTTAC-TT 726
Query 570 TATGGGTTTAGGAAAGTGGATCCGGACCGGTGGGAGTTTGCGAACGAGCATTTTCTGAGG 629
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 725 TAGGGGTTTAGGAAAGTGGATCCGGACCGGTGGGAGTTTGCGAACGAGCATTTTCTAAGG 666
Query 630 GGACAGAAGCACTTGTTGAAGAACATAGCGCGTAGGAAACACGCGCGAGGGATGTACGGT 689
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 665 GGACAGAAGCATTTGTTGAATAACATAGCGCGTAGGAAACACGCGCGGGGGATGTACGGT 606
Query 690 CAAGATTTGGAGGACGGTGAGATTGTGAGAGAGATCGAACGGTTAAAAGAAGAGCAAAGG 749
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 605 CAAGATTTGGAGGACGGTGAGATTGTGAGGGAGATCGAACGGTTAAAAGAAGAGCAGAGG 546
Query 750 GAGCTAGAGGCAGAGATTCAGAGGATGAACCAAAGGATCGAAGCGACGGAGAAGAGACCG 809
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 545 GAGCTAGAGGCAGAGATTCAGAGGATGAACCGGAGGATCGAAGCGACGGAGAAGAGACCG 486
Query 810 GAGCAGATGATGGCGTTTCTTTACAAAGTCGTTGAAGATCCTGATCTTCTTCCAAGAATG 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 GAGCAGATGATGGCGTTTCTTTACAAAGTCGTTGAAGATCCTGATCTTCTTCCAAGAATG 426
Query 870 ATGCTTGAGAAAGAACGGACAAAGCAACAA------GTTTCCGACAAGAAGAAGCGTCGT 923
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 425 ATGCTCGAGAAAGAACGGACAAAGCAACAACAACAAGTTTCCGACAAGAAGAAGCGTCGT 366
Query 924 GTCACGATGTCGACGGTGAAAG-CAGAGGAGGAAGAAGTTGAAGAAGACGAAGGGAGGGT 982
|||||||||||||||||||| | ||||||| |||||||| |||||||| |||||||||||
Sbjct 365 GTCACGATGTCGACGGTGAA-GTCAGAGGAAGAAGAAGTGGAAGAAGATGAAGGGAGGGT 307
Query 983 CTTTAGGGTTATTTCATCATCAACGCCGTCACCGTCGTCAACGGAGAATCTTTACCGGAA 1042
|||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 306 CTTTAGGGTTATGTCATCATCAACACCGTCGCCGTCATCAACGGAGAATCTTTACCGGAA 247
Query 1043 TCATTCACCGGATGGGTGGGTTGTTCCCATGACGCAAGGACAGTTTGGTAATTACGAGAC 1102
||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||
Sbjct 246 TCATTCACCGGATGGGTGGATTGTTCCTATGACGCAAGGACAGTTTGGTAGTTACGAGAC 187
Query 1103 TGGTTTGGTGGCGAACTCGATGCTCTCGAATTCAACGTCTTCGACGTCATCATCGTTGAC 1162
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 186 GGGTTTGGTGGCGAAGTCGATGCTCTCGAATTCAACGTCGTCGACGTCATCATCTTTGAC 127
Query 1163 CTCCACGTTTTCGTTACCGGAGAGTGTTAACggaggaggaggaggaggaTGTGGGAATAT 1222
|| |||||||| || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 126 GTCGACGTTTTCTTTGCCGGAGAGTGTTAACGGAGGAGGAGGAGGAGGATGTGGGAGTAT 67
Query 1223 TCAGGGAGAAAGAAGGTATAAAGAAACGGCGACGTTTGGAGGAGTGGTAGAGTCAAATCC 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 TCAGGGAGAAAGAAGGTATAAAGAAACGGCGACGTTTGGAGGAGTGGTAGAGTCAAATCC 7
Query 1283 ACCAAC 1288
||||||
Sbjct 6 ACCAAC 1
Score = 346 bits (187), Expect = 4e-94
Identities = 246/272 (90%), Gaps = 14/272 (5%)
Strand=Plus/Minus
Query 55 AATGGATCAAATAACTTGTCACATAAGAAATATATTAACaaaacaaaaagggcaaaaaaG 114
|||| |||| ||||||||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct 1157 AATGTATCACATAACTTGTGACATAAGAAA-ATATAAACAAAACAAAAAGGGCAAAAAAG 1099
Query 115 ACCTGAAAGCTTTGAGACACACCTGCATAGGTCCCACAGTTCACTCGTGACACCGTAAAA 174
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 ACCTGAAAGCTTAGAGGCACACCTGCATAGGTCCCACAGTTCACTCGTGACACCGTAAAA 1039
Query 175 -GCAAAAACACGAACCCGCCACGTTA-CACAAAAAGCAAGCCACGTCAATATAGTCTCAC 232
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1038 GGC-AAAACACGAACCCGCCACGTTATCACAAAAAGCAAGCCACGTCAATATAGTCTCAC 980
Query 233 TGTCAACTACACTTAACTTACTATTTTCACATTTTATTTCCCTATTTTATTTTGTTTATA 292
|||||||||||||||||||||||||||||||| | |||| ||||| || | |||
Sbjct 979 TGTCAACTACACTTAACTTACTATTTTCACATCTCATTTTCCTATCTT-T-------ATA 928
Query 293 TAAACC-TACCAGCCTCCTCCTTAATTTCTTT 323
|||||| | |||| |||||| |||||||||||
Sbjct 927 TAAACCCT-CCAGGCTCCTCTTTAATTTCTTT 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82077891075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5